Wall clock time and date at job start Sat Apr 11 2020 06:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36545 * 120.26908 * 2 1 4 4 C 1.48316 * 120.73597 * 359.97438 * 3 2 1 5 5 O 1.21486 * 120.00301 * 255.78695 * 4 3 2 6 6 N 1.34783 * 119.99933 * 75.79763 * 4 3 2 7 7 C 1.46501 * 120.00230 * 184.94329 * 6 4 3 8 8 C 1.52994 * 109.47050 * 184.97721 * 7 6 4 9 9 C 1.50696 * 115.55065 * 304.38221 * 8 7 6 10 10 H 1.08000 * 120.00135 * 143.07413 * 9 8 7 11 11 C 1.37877 * 120.00027 * 323.06745 * 9 8 7 12 12 N 1.31516 * 120.00083 * 168.81804 * 11 9 8 13 13 Si 1.86797 * 119.99937 * 348.82664 * 11 9 8 14 14 H 1.48505 * 109.47326 * 95.56858 * 13 11 9 15 15 H 1.48501 * 109.47159 * 215.56860 * 13 11 9 16 16 H 1.48501 * 109.47311 * 335.56531 * 13 11 9 17 17 C 1.53009 * 117.49647 * 158.71206 * 8 7 6 18 18 C 1.53001 * 117.49807 * 90.05631 * 8 7 6 19 19 C 1.47082 * 118.52075 * 180.02562 * 3 2 1 20 20 C 1.39822 * 120.68011 * 180.02562 * 19 3 2 21 21 C 1.36589 * 119.82888 * 179.97438 * 20 19 3 22 22 C 1.38855 * 120.52585 * 0.02562 * 21 20 19 23 23 C 1.37748 * 120.63468 * 359.97253 * 22 21 20 24 24 C 1.39283 * 119.82779 * 0.02562 * 23 22 21 25 25 N 1.37839 * 120.43366 * 180.26400 * 24 23 22 26 26 C 1.46498 * 119.33502 * 0.03132 * 25 24 23 27 27 C 1.34444 * 121.33008 * 180.28000 * 25 24 23 28 28 O 1.21822 * 119.50740 * 179.72372 * 27 25 24 29 29 H 1.09001 * 109.47024 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47017 * 299.97569 * 1 2 3 31 31 H 1.08994 * 109.47909 * 59.97727 * 1 2 3 32 32 H 0.97003 * 119.99847 * 4.93842 * 6 4 3 33 33 H 1.09002 * 109.46768 * 304.97808 * 7 6 4 34 34 H 1.09000 * 109.47251 * 64.97225 * 7 6 4 35 35 H 0.97003 * 119.99890 * 185.00829 * 12 11 9 36 36 H 1.08999 * 117.49893 * 359.97438 * 17 8 7 37 37 H 1.08995 * 117.49727 * 145.01867 * 17 8 7 38 38 H 1.09003 * 117.49546 * 214.97919 * 18 8 7 39 39 H 1.08995 * 117.49893 * 359.97151 * 18 8 7 40 40 H 1.07994 * 120.08884 * 359.96027 * 20 19 3 41 41 H 1.07999 * 119.74036 * 180.02562 * 21 20 19 42 42 H 1.07995 * 119.68351 * 179.97438 * 22 21 20 43 43 H 1.07991 * 120.08379 * 180.02562 * 23 22 21 44 44 H 1.09000 * 109.47523 * 180.25274 * 26 25 24 45 45 H 1.09008 * 109.46885 * 300.24969 * 26 25 24 46 46 H 1.09002 * 109.47576 * 60.24764 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1793 0.0000 4 6 1.4763 2.4766 -0.0006 5 8 1.4082 3.1329 -1.0206 6 7 0.8987 2.9274 1.1307 7 6 0.0974 4.1536 1.1056 8 6 -0.3365 4.5084 2.5292 9 6 -1.0838 3.4291 3.2690 10 1 -0.9234 3.2898 4.3279 11 6 -1.9726 2.6194 2.5941 12 7 -2.4576 1.5453 3.1779 13 14 -2.4877 3.0478 0.8505 14 1 -1.6410 2.3002 -0.1137 15 1 -3.9116 2.6772 0.6497 16 1 -2.3200 4.5066 0.6290 17 6 -0.7346 5.9598 2.8053 18 6 0.5893 5.4130 3.3451 19 6 3.6654 1.1344 -0.0006 20 6 4.4152 2.3146 -0.0001 21 6 5.7797 2.2527 -0.0001 22 6 6.4300 1.0258 -0.0011 23 6 5.7115 -0.1495 -0.0016 24 6 4.3192 -0.1103 -0.0016 25 7 3.5879 -1.2786 0.0034 26 6 4.2896 -2.5646 0.0094 27 6 2.2435 -1.2619 -0.0021 28 8 1.6304 -2.3146 -0.0025 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5135 0.8903 31 1 -0.3635 0.5141 -0.8897 32 1 1.0136 2.4400 1.9615 33 1 0.6927 4.9683 0.6935 34 1 -0.7850 3.9983 0.4849 35 1 -3.0252 0.9368 2.6795 36 1 -0.6871 6.6618 1.9729 37 1 -1.5369 6.1338 3.5223 38 1 0.6575 5.2275 4.4171 39 1 1.5076 5.7549 2.8678 40 1 3.9168 3.2727 0.0001 41 1 6.3574 3.1651 0.0007 42 1 7.5094 0.9927 -0.0016 43 1 6.2264 -1.0987 -0.0020 44 1 3.5616 -3.3759 0.0082 45 1 4.9184 -2.6395 -0.8779 46 1 4.9111 -2.6354 0.9021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935781685.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:47 Heat of formation + Delta-G solvation = -4.631975 kcal Electronic energy + Delta-G solvation = -30354.355762 eV Core-core repulsion = 26402.668471 eV Total energy + Delta-G solvation = -3951.687291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.62555 -40.97537 -39.79788 -38.78931 -36.90770 -36.32517 -35.08223 -34.35906 -32.39818 -31.05786 -29.60915 -28.83405 -28.17357 -27.00962 -24.68076 -23.94678 -23.39892 -23.06590 -21.52585 -21.07401 -19.92176 -19.24035 -18.54154 -18.19470 -17.65232 -17.59403 -17.23895 -16.96198 -16.30209 -15.82950 -15.73832 -15.56475 -15.29912 -15.04613 -14.99692 -14.79576 -14.63747 -14.23901 -14.23206 -13.97892 -13.82604 -13.78777 -13.49958 -13.24335 -12.83319 -12.53449 -12.49010 -12.28999 -12.15449 -11.94389 -11.83535 -11.56146 -11.50126 -11.35683 -11.25300 -10.99573 -10.80052 -10.42909 -9.98834 -9.57998 -9.04374 -8.35569 -6.32927 -0.82330 0.09714 0.57551 1.22022 1.26319 1.32715 1.36051 1.47685 1.76436 1.98235 2.23403 2.79929 2.83472 3.10487 3.25883 3.36711 3.47850 3.72674 3.84234 3.92293 4.13991 4.14857 4.19223 4.24994 4.30978 4.36615 4.40387 4.42387 4.43455 4.45444 4.48449 4.71890 4.74620 4.77631 4.87150 4.90257 4.92690 4.93350 5.00569 5.19958 5.30271 5.32046 5.38258 5.48966 5.52733 5.64203 5.72076 5.96287 6.26765 6.38255 6.63112 6.68521 6.92889 7.28092 8.77463 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012662 B = 0.004535 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.770284 B = 6173.089077 C = 7480.570944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.151 4.151 3 C -0.040 4.040 4 C 0.561 3.439 5 O -0.565 6.565 6 N -0.686 5.686 7 C 0.143 3.857 8 C -0.039 4.039 9 C -0.482 4.482 10 H 0.048 0.952 11 C 0.052 3.948 12 N -0.924 5.924 13 Si 0.918 3.082 14 H -0.273 1.273 15 H -0.310 1.310 16 H -0.249 1.249 17 C -0.190 4.190 18 C -0.159 4.159 19 C -0.124 4.124 20 C -0.072 4.072 21 C -0.136 4.136 22 C -0.052 4.052 23 C -0.151 4.151 24 C 0.166 3.834 25 N -0.516 5.516 26 C 0.054 3.946 27 C 0.537 3.463 28 O -0.556 6.556 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.414 0.586 33 H 0.079 0.921 34 H 0.042 0.958 35 H 0.266 0.734 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.119 0.881 41 H 0.159 0.841 42 H 0.177 0.823 43 H 0.172 0.828 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.365 -1.989 -6.509 23.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.156 4.156 3 C -0.045 4.045 4 C 0.347 3.653 5 O -0.446 6.446 6 N -0.335 5.335 7 C 0.021 3.979 8 C -0.040 4.040 9 C -0.519 4.519 10 H 0.066 0.934 11 C -0.149 4.149 12 N -0.562 5.562 13 Si 0.749 3.251 14 H -0.199 1.199 15 H -0.239 1.239 16 H -0.174 1.174 17 C -0.228 4.228 18 C -0.196 4.196 19 C -0.127 4.127 20 C -0.091 4.091 21 C -0.155 4.155 22 C -0.070 4.070 23 C -0.171 4.171 24 C 0.066 3.934 25 N -0.232 5.232 26 C -0.086 4.086 27 C 0.332 3.668 28 O -0.438 6.438 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.251 0.749 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.120 0.880 40 H 0.137 0.863 41 H 0.176 0.824 42 H 0.194 0.806 43 H 0.189 0.811 44 H 0.105 0.895 45 H 0.124 0.876 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 21.737 -2.342 -7.186 23.014 hybrid contribution -1.546 -0.197 -0.269 1.581 sum 20.191 -2.539 -7.455 21.673 Atomic orbital electron populations 1.20669 0.89431 1.04091 1.02164 1.22041 0.97212 0.91343 1.04958 1.21105 0.94108 0.92349 0.96953 1.18341 0.78524 0.84782 0.83673 1.90734 1.62350 1.58209 1.33301 1.45969 1.49362 1.27066 1.11131 1.21317 0.93445 0.86278 0.96910 1.19423 1.01619 0.90926 0.92006 1.20402 1.21838 1.14161 0.95506 0.93392 1.25354 0.95166 0.94320 1.00049 1.69960 1.35226 1.12579 1.38454 0.86491 0.76017 0.80003 0.82592 1.19898 1.23855 1.17385 1.23146 0.98754 0.97579 1.03365 1.22872 0.93494 1.03787 0.99457 1.18371 0.89249 0.94176 1.10883 1.20965 0.95639 0.95789 0.96666 1.21215 0.92859 1.00373 1.01006 1.21653 1.02205 0.90295 0.92890 1.21242 0.88683 1.02037 1.05147 1.18151 0.93017 0.83525 0.98674 1.45085 1.05627 1.08579 1.63881 1.22410 0.98376 0.82193 1.05612 1.17860 0.82139 0.89145 0.77669 1.90825 1.67383 1.33357 1.52228 0.89867 0.91242 0.91637 0.74924 0.90237 0.94075 0.92417 0.88816 0.89884 0.89814 0.87975 0.86305 0.82379 0.80569 0.81101 0.89544 0.87571 0.87671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.34 8.83 71.24 0.63 -3.71 16 2 C -0.15 -5.69 6.08 -18.22 -0.11 -5.80 16 3 C -0.04 -1.41 5.80 -18.67 -0.11 -1.52 16 4 C 0.56 22.21 5.16 86.92 0.45 22.66 16 5 O -0.57 -24.91 17.08 -3.67 -0.06 -24.97 16 6 N -0.69 -27.41 5.08 -465.52 -2.36 -29.77 16 7 C 0.14 5.89 4.36 86.38 0.38 6.26 16 8 C -0.04 -1.63 1.41 -52.93 -0.07 -1.70 16 9 C -0.48 -24.96 8.86 25.60 0.23 -24.73 16 10 H 0.05 2.76 8.06 -2.91 -0.02 2.73 16 11 C 0.05 2.81 5.42 84.65 0.46 3.27 16 12 N -0.92 -54.23 13.95 21.45 0.30 -53.93 16 13 Si 0.92 44.82 24.03 68.60 1.65 46.47 16 14 H -0.27 -13.24 6.56 99.48 0.65 -12.59 16 15 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 16 H -0.25 -11.44 6.38 99.48 0.63 -10.81 16 17 C -0.19 -7.03 9.96 30.62 0.30 -6.72 16 18 C -0.16 -5.54 9.93 30.62 0.30 -5.24 16 19 C -0.12 -3.53 5.89 -20.00 -0.12 -3.65 16 20 C -0.07 -1.72 9.44 22.27 0.21 -1.51 16 21 C -0.14 -2.06 9.97 22.03 0.22 -1.84 16 22 C -0.05 -0.56 10.02 22.30 0.22 -0.33 16 23 C -0.15 -2.06 9.26 22.41 0.21 -1.85 16 24 C 0.17 3.87 6.53 39.03 0.25 4.12 16 25 N -0.52 -13.21 3.03 -659.90 -2.00 -15.21 16 26 C 0.05 0.86 9.20 127.77 1.18 2.03 16 27 C 0.54 18.62 7.58 86.34 0.65 19.27 16 28 O -0.56 -21.76 15.26 -4.74 -0.07 -21.84 16 29 H 0.08 3.30 7.20 -2.39 -0.02 3.28 16 30 H 0.07 3.10 8.08 -2.38 -0.02 3.08 16 31 H 0.06 2.68 7.90 -2.39 -0.02 2.67 16 32 H 0.41 16.75 7.97 -92.71 -0.74 16.01 16 33 H 0.08 2.96 8.06 -2.39 -0.02 2.94 16 34 H 0.04 1.88 2.57 -2.39 -0.01 1.88 16 35 H 0.27 15.05 8.32 -92.71 -0.77 14.28 16 36 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 38 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 39 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.12 3.11 7.23 -2.91 -0.02 3.09 16 41 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 42 H 0.18 0.42 8.06 -2.91 -0.02 0.39 16 43 H 0.17 1.07 6.67 -2.92 -0.02 1.06 16 44 H 0.09 1.71 6.80 -2.39 -0.02 1.70 16 45 H 0.11 1.04 7.89 -2.38 -0.02 1.02 16 46 H 0.10 1.08 7.92 -2.39 -0.02 1.06 16 Total: -1.00 -72.62 375.51 2.89 -69.73 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.16 Total: 30.51 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 5.28 Total: -0.99 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -4.07 Total: -98.91 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -0.14 Total: -46.81 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.65 Total: 46.47 kcal Total: -72.62 2.89 -69.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935781685.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.097 kcal (2) G-P(sol) polarization free energy of solvation -72.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds