Wall clock time and date at job start Sat Apr 11 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34510 * 125.79482 * 2 1 4 4 C 1.41380 * 106.84861 * 180.02562 * 3 2 1 5 5 C 1.34512 * 106.83812 * 359.97438 * 4 3 2 6 6 C 1.50694 * 125.79233 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47102 * 89.99972 * 6 5 4 8 8 O 1.21279 * 120.00250 * 0.02562 * 7 6 5 9 9 N 1.34787 * 119.99870 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99886 * 180.02562 * 9 7 6 11 11 H 1.09003 * 110.73023 * 31.59307 * 10 9 7 12 12 C 1.54351 * 110.82104 * 267.97074 * 10 9 7 13 13 C 1.51368 * 105.16898 * 268.12044 * 12 10 9 14 14 C 1.38500 * 130.38914 * 162.81112 * 13 12 10 15 15 C 1.38107 * 120.21418 * 180.02562 * 14 13 12 16 16 C 1.38257 * 119.93335 * 0.02562 * 15 14 13 17 17 C 1.38101 * 119.93723 * 359.97438 * 16 15 14 18 18 C 1.38306 * 120.28097 * 0.03434 * 17 16 15 19 19 C 1.51374 * 130.55265 * 180.02562 * 18 17 16 20 20 H 1.08990 * 110.30174 * 316.12266 * 19 18 17 21 21 N 1.46505 * 110.30272 * 78.17894 * 19 18 17 22 22 C 1.36931 * 119.99788 * 272.22380 * 21 19 18 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 19 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 19 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00121 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00072 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99871 * 26 24 22 30 30 O 1.34308 * 125.78922 * 180.34435 * 2 1 3 31 31 H 1.09005 * 109.46478 * 90.00311 * 1 2 3 32 32 H 1.09001 * 109.47067 * 210.00321 * 1 2 3 33 33 H 1.09000 * 109.46853 * 330.00367 * 1 2 3 34 34 H 1.08010 * 126.57700 * 0.02562 * 3 2 1 35 35 H 1.08001 * 126.58180 * 180.02562 * 4 3 2 36 36 H 1.09000 * 109.47149 * 330.00174 * 6 5 4 37 37 H 1.09007 * 109.47402 * 210.00076 * 6 5 4 38 38 H 0.96994 * 120.00066 * 0.02562 * 9 7 6 39 39 H 1.09000 * 110.30318 * 27.04597 * 12 10 9 40 40 H 1.09006 * 110.30264 * 149.19870 * 12 10 9 41 41 H 1.07994 * 119.89720 * 0.02562 * 14 13 12 42 42 H 1.07997 * 120.03404 * 179.97438 * 15 14 13 43 43 H 1.08003 * 120.03005 * 180.02562 * 16 15 14 44 44 H 1.08002 * 119.89230 * 180.02562 * 17 16 15 45 45 H 0.97000 * 119.99792 * 92.22174 * 21 19 18 46 46 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0910 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5815 -0.7122 -0.0004 6 6 4.7706 -1.6379 -0.0003 7 6 5.1670 -1.9462 1.4206 8 8 4.5450 -1.4623 2.3424 9 7 6.2130 -2.7598 1.6669 10 6 6.5981 -3.0600 3.0481 11 1 5.7253 -3.0581 3.7011 12 6 7.6654 -2.0638 3.5490 13 6 8.9946 -2.7157 3.2335 14 6 10.2665 -2.1721 3.1630 15 6 11.3482 -2.9725 2.8523 16 6 11.1617 -4.3209 2.6102 17 6 9.8943 -4.8648 2.6800 18 6 8.8088 -4.0661 2.9908 19 6 7.3411 -4.4102 3.1288 20 1 7.0276 -5.0632 2.3145 21 7 7.0892 -5.0533 4.4209 22 6 7.2188 -6.4106 4.5468 23 1 7.5072 -7.0071 3.6939 24 6 6.9856 -7.0193 5.7725 25 7 6.6347 -6.2923 6.8120 26 14 7.1700 -8.8700 5.9463 27 1 8.5670 -9.1943 6.3313 28 1 6.2405 -9.3639 6.9938 29 1 6.8489 -9.5232 4.6518 30 8 2.2925 -1.0895 -0.0065 31 1 -0.3632 -0.0001 -1.0278 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.9667 2.1204 0.0004 35 1 4.5213 1.2433 -0.0004 36 1 5.6040 -1.1589 -0.5142 37 1 4.5106 -2.5635 -0.5140 38 1 6.7108 -3.1465 0.9297 39 1 7.5747 -1.1148 3.0204 40 1 7.5650 -1.9103 4.6235 41 1 10.4130 -1.1189 3.3516 42 1 12.3387 -2.5455 2.7977 43 1 12.0066 -4.9484 2.3675 44 1 9.7495 -5.9183 2.4912 45 1 6.8306 -4.5175 5.1870 46 1 6.4714 -6.7177 7.6684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960259084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:00 Heat of formation + Delta-G solvation = -3.594152 kcal Electronic energy + Delta-G solvation = -28627.261553 eV Core-core repulsion = 24675.619265 eV Total energy + Delta-G solvation = -3951.642288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.53293 -41.54701 -40.19616 -37.54229 -35.74788 -34.28514 -34.08445 -33.67514 -32.76947 -31.34449 -30.93950 -28.98780 -27.70164 -26.13369 -25.08051 -23.43481 -22.75704 -22.12133 -21.52539 -21.44779 -20.94394 -19.37997 -18.40082 -17.80772 -17.33938 -16.92251 -16.84706 -16.52040 -16.46582 -15.75316 -15.74342 -15.45327 -15.18328 -15.02450 -14.74525 -14.30359 -14.22962 -14.10435 -13.93582 -13.73146 -13.71936 -13.57021 -13.12943 -13.07706 -12.90768 -12.79719 -12.62132 -12.49159 -12.30784 -12.23589 -12.01426 -11.84702 -11.64790 -11.10640 -10.99702 -10.78201 -10.20128 -9.62166 -9.40647 -9.20034 -9.08318 -7.97298 -5.27766 0.55636 0.60840 0.70844 1.45608 1.47323 1.55383 1.57631 1.63001 1.93964 2.26181 2.55423 2.95521 3.35530 3.41655 3.56567 3.73974 3.87537 4.01289 4.07083 4.12763 4.14555 4.19348 4.26928 4.29469 4.32863 4.44165 4.49515 4.59428 4.68692 4.70736 4.75765 4.82670 4.86681 4.90756 4.94249 4.98399 5.07908 5.21322 5.30390 5.32198 5.44193 5.50207 5.66438 5.66728 5.72140 5.90592 6.20695 6.23497 6.24991 6.52239 7.22116 7.28764 7.97866 8.22796 9.25784 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010340 B = 0.002968 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.399366 B = 9432.419299 C =11455.822930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.030 4.030 3 C -0.226 4.226 4 C -0.204 4.204 5 C -0.019 4.019 6 C -0.051 4.051 7 C 0.513 3.487 8 O -0.580 6.580 9 N -0.698 5.698 10 C 0.147 3.853 11 H 0.073 0.927 12 C -0.078 4.078 13 C -0.103 4.103 14 C -0.117 4.117 15 C -0.123 4.123 16 C -0.127 4.127 17 C -0.110 4.110 18 C -0.114 4.114 19 C 0.207 3.793 20 H 0.063 0.937 21 N -0.720 5.720 22 C -0.236 4.236 23 H 0.080 0.920 24 C -0.072 4.072 25 N -0.968 5.968 26 Si 0.972 3.028 27 H -0.287 1.287 28 H -0.298 1.298 29 H -0.266 1.266 30 O -0.196 6.196 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.168 0.832 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.135 0.865 38 H 0.417 0.583 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.136 0.864 42 H 0.150 0.850 43 H 0.142 0.858 44 H 0.109 0.891 45 H 0.373 0.627 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.095 13.963 -19.588 24.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.079 4.079 3 C -0.245 4.245 4 C -0.223 4.223 5 C -0.069 4.069 6 C -0.090 4.090 7 C 0.300 3.700 8 O -0.459 6.459 9 N -0.350 5.350 10 C 0.041 3.959 11 H 0.092 0.908 12 C -0.116 4.116 13 C -0.104 4.104 14 C -0.135 4.135 15 C -0.141 4.141 16 C -0.145 4.145 17 C -0.129 4.129 18 C -0.118 4.118 19 C 0.097 3.903 20 H 0.081 0.919 21 N -0.358 5.358 22 C -0.368 4.368 23 H 0.098 0.902 24 C -0.265 4.265 25 N -0.618 5.618 26 Si 0.801 3.199 27 H -0.215 1.215 28 H -0.225 1.225 29 H -0.190 1.190 30 O -0.094 6.094 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.185 0.815 35 H 0.180 0.820 36 H 0.182 0.818 37 H 0.153 0.847 38 H 0.254 0.746 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.153 0.847 42 H 0.168 0.832 43 H 0.159 0.841 44 H 0.127 0.873 45 H 0.205 0.795 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.656 13.792 -18.978 23.470 hybrid contribution 0.199 -1.009 0.959 1.406 sum -0.457 12.783 -18.019 22.097 Atomic orbital electron populations 1.20472 0.82822 1.04837 1.04746 1.23202 0.95586 0.83899 1.05246 1.21893 0.92616 1.00353 1.09649 1.21847 0.99201 0.93842 1.07384 1.21934 0.82906 0.94762 1.07268 1.20220 0.94047 1.01435 0.93262 1.21070 0.79086 0.77768 0.92055 1.90742 1.54259 1.52892 1.48011 1.45647 1.32362 1.49048 1.07983 1.21461 0.96525 0.94080 0.83883 0.90846 1.21288 0.90736 0.98505 1.01093 1.20664 0.95007 0.94610 1.00093 1.20841 0.91010 1.00759 1.00872 1.21299 0.99323 0.93606 0.99859 1.21298 0.96439 0.96104 1.00671 1.20714 0.92628 0.99288 1.00260 1.21505 0.97455 0.94387 0.98408 1.19940 0.89072 0.91977 0.89262 0.91914 1.42410 1.81492 1.04528 1.07373 1.19554 1.37726 0.84214 0.95267 0.90205 1.25569 1.02947 1.02216 0.95751 1.69829 1.54996 1.35984 1.01034 0.85167 0.76973 0.80307 0.77490 1.21453 1.22482 1.19043 1.83920 1.17086 1.36399 1.71980 0.88287 0.90846 0.87618 0.81478 0.81996 0.81849 0.84704 0.74555 0.89445 0.91042 0.84655 0.83229 0.84054 0.87293 0.79484 0.94032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 10.42 71.24 0.74 -0.30 16 2 C -0.03 -0.69 7.32 24.83 0.18 -0.51 16 3 C -0.23 -4.99 10.81 22.19 0.24 -4.75 16 4 C -0.20 -4.73 10.81 22.19 0.24 -4.49 16 5 C -0.02 -0.47 5.81 24.83 0.14 -0.33 16 6 C -0.05 -0.93 6.23 29.10 0.18 -0.74 16 7 C 0.51 14.22 7.82 87.66 0.69 14.91 16 8 O -0.58 -22.46 15.68 -3.03 -0.05 -22.50 16 9 N -0.70 -18.15 5.11 -438.23 -2.24 -20.39 16 10 C 0.15 5.09 3.03 45.90 0.14 5.23 16 11 H 0.07 3.10 7.47 -2.39 -0.02 3.09 16 12 C -0.08 -2.50 6.49 30.52 0.20 -2.30 16 13 C -0.10 -3.28 6.14 -19.54 -0.12 -3.40 16 14 C -0.12 -3.13 10.04 22.30 0.22 -2.90 16 15 C -0.12 -2.99 10.05 22.24 0.22 -2.77 16 16 C -0.13 -3.43 10.05 22.24 0.22 -3.21 16 17 C -0.11 -3.67 10.03 22.25 0.22 -3.44 16 18 C -0.11 -4.06 5.78 -19.58 -0.11 -4.17 16 19 C 0.21 8.06 3.11 44.91 0.14 8.19 16 20 H 0.06 2.39 8.04 -2.39 -0.02 2.37 16 21 N -0.72 -36.24 5.14 -323.33 -1.66 -37.91 16 22 C -0.24 -12.89 9.96 84.04 0.84 -12.05 16 23 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 24 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 25 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 26 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 27 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 28 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 29 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 30 O -0.20 -5.51 10.65 -2.59 -0.03 -5.54 16 31 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.17 2.73 8.06 -2.91 -0.02 2.70 16 35 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 36 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.14 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.42 8.02 8.66 -92.71 -0.80 7.22 16 39 H 0.09 2.47 8.09 -2.39 -0.02 2.45 16 40 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 41 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 42 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 43 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 44 H 0.11 3.68 8.06 -2.91 -0.02 3.66 16 45 H 0.37 20.68 7.81 -92.71 -0.72 19.96 16 46 H 0.25 15.10 8.31 -92.70 -0.77 14.32 16 Total: -1.00 -78.27 393.30 2.68 -75.60 By element: Atomic # 1 Polarization: 43.46 SS G_CDS: -0.51 Total: 42.95 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 4.86 Total: -20.72 kcal Atomic # 7 Polarization: -114.25 SS G_CDS: -3.62 Total: -117.87 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.08 Total: -28.04 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -78.27 2.68 -75.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960259084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.001 kcal (2) G-P(sol) polarization free energy of solvation -78.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds