Wall clock time and date at job start Sat Apr 11 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41381 * 126.57424 * 2 1 4 4 C 1.34520 * 106.83580 * 179.72986 * 3 2 1 5 5 O 1.34302 * 108.42210 * 0.26485 * 4 3 2 6 6 C 1.34302 * 109.47622 * 359.97438 * 5 4 3 7 7 C 1.50697 * 125.79016 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47275 * 269.97695 * 7 6 5 9 9 O 1.21282 * 120.00104 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99878 * 179.97438 * 8 7 6 11 11 C 1.46507 * 119.99853 * 180.02562 * 10 8 7 12 12 H 1.09002 * 110.72881 * 31.58966 * 11 10 8 13 13 C 1.54347 * 110.81829 * 267.97008 * 11 10 8 14 14 C 1.51367 * 105.16627 * 215.42634 * 13 11 10 15 15 C 1.38495 * 130.38862 * 197.19188 * 14 13 11 16 16 C 1.38113 * 120.21576 * 180.02562 * 15 14 13 17 17 C 1.38251 * 119.93295 * 359.97379 * 16 15 14 18 18 C 1.38102 * 119.93348 * 0.03485 * 17 16 15 19 19 C 1.38218 * 109.76040 * 17.19279 * 14 13 11 20 20 C 1.51365 * 109.75663 * 359.97438 * 19 14 13 21 21 H 1.09008 * 110.30170 * 101.73732 * 20 19 14 22 22 N 1.46501 * 110.30326 * 223.88758 * 20 19 14 23 23 C 1.36938 * 120.00292 * 270.74965 * 22 20 19 24 24 H 1.08004 * 119.99789 * 359.97438 * 23 22 20 25 25 C 1.38816 * 120.00009 * 179.97438 * 23 22 20 26 26 N 1.31618 * 119.99858 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 119.99844 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47213 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47233 * 120.00372 * 27 25 23 30 30 H 1.48506 * 109.47082 * 240.00371 * 27 25 23 31 31 H 1.09007 * 109.47162 * 90.02696 * 1 2 3 32 32 H 1.08995 * 109.47309 * 210.02375 * 1 2 3 33 33 H 1.09002 * 109.47648 * 330.02473 * 1 2 3 34 34 H 1.08002 * 126.58570 * 359.97438 * 3 2 1 35 35 H 1.08004 * 125.78733 * 180.22473 * 4 3 2 36 36 H 1.08994 * 109.47121 * 29.97794 * 7 6 5 37 37 H 1.09003 * 109.47065 * 149.97439 * 7 6 5 38 38 H 0.96995 * 119.99930 * 359.97438 * 10 8 7 39 39 H 1.09001 * 110.30757 * 334.35330 * 13 11 10 40 40 H 1.09007 * 110.30425 * 96.50857 * 13 11 10 41 41 H 1.08004 * 119.89443 * 0.02562 * 15 14 13 42 42 H 1.07999 * 120.03008 * 180.02562 * 16 15 14 43 43 H 1.07997 * 120.03063 * 179.97438 * 17 16 15 44 44 H 1.08004 * 119.88984 * 180.02562 * 18 17 16 45 45 H 0.96996 * 119.99755 * 90.74627 * 22 20 19 46 46 H 0.96998 * 119.99708 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1354 0.0000 4 6 3.6156 0.6811 0.0061 5 8 3.5848 -0.6616 0.0038 6 6 2.3087 -1.0801 -0.0031 7 6 1.8523 -2.5163 -0.0070 8 6 1.7067 -2.9933 -1.4290 9 8 1.9493 -2.2409 -2.3488 10 7 1.3071 -4.2561 -1.6787 11 6 1.1661 -4.7200 -3.0612 12 1 1.8871 -4.2230 -3.7103 13 6 -0.2755 -4.5034 -3.5682 14 6 -0.5593 -5.6846 -4.4713 15 6 -1.5418 -5.8650 -5.4307 16 6 -1.6087 -7.0462 -6.1433 17 6 -0.6921 -8.0520 -5.8993 18 6 0.2881 -7.8739 -4.9429 19 6 0.3570 -6.6902 -4.2273 20 6 1.3197 -6.2533 -3.1440 21 1 1.0512 -6.7117 -2.1921 22 7 2.6929 -6.6082 -3.5109 23 6 3.2018 -7.8298 -3.1589 24 1 2.5909 -8.5315 -2.6104 25 6 4.5028 -8.1662 -3.5071 26 7 5.2474 -7.3108 -4.1751 27 14 5.1967 -9.8328 -3.0275 28 1 4.1655 -10.6042 -2.2880 29 1 5.5877 -10.5771 -4.2516 30 1 6.3884 -9.6424 -2.1621 31 1 -0.3634 -0.0005 -1.0277 32 1 -0.3634 -0.8897 0.5142 33 1 -0.3634 0.8902 0.5134 34 1 2.0366 2.1691 -0.0004 35 1 4.5060 1.2925 0.0112 36 1 2.5880 -3.1327 0.5095 37 1 0.8917 -2.5937 0.5023 38 1 1.1135 -4.8579 -0.9431 39 1 -0.9732 -4.4913 -2.7308 40 1 -0.3427 -3.5723 -4.1311 41 1 -2.2579 -5.0796 -5.6222 42 1 -2.3758 -7.1836 -6.8910 43 1 -0.7433 -8.9765 -6.4553 44 1 1.0040 -8.6600 -4.7531 45 1 3.2416 -5.9778 -4.0033 46 1 6.1566 -7.5457 -4.4181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960307015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:06 Heat of formation + Delta-G solvation = 16.748840 kcal Electronic energy + Delta-G solvation = -28926.667766 eV Core-core repulsion = 24975.907617 eV Total energy + Delta-G solvation = -3950.760149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.59328 -40.14435 -38.96677 -36.13929 -34.29550 -33.98576 -32.89384 -31.95161 -31.20043 -29.71238 -29.06961 -27.69164 -26.15517 -25.87767 -23.16271 -22.32055 -21.48314 -20.84450 -20.36348 -20.15856 -19.47829 -17.43733 -17.23469 -16.97060 -16.04373 -15.78508 -15.59241 -15.40870 -15.00201 -14.57649 -14.32608 -14.26303 -13.68253 -13.52178 -13.29786 -13.18915 -13.10689 -12.90651 -12.75186 -12.54934 -12.48647 -12.44716 -12.25273 -11.97465 -11.66524 -11.48859 -11.08450 -10.95105 -10.84671 -10.59475 -10.40131 -10.12375 -9.81671 -9.77028 -9.60244 -9.09600 -8.81248 -8.35174 -8.31894 -8.09043 -7.09092 -5.84294 -3.14986 1.70380 1.79759 1.89321 2.54642 2.76578 2.95146 3.37776 3.42729 3.45154 3.46128 4.21904 4.51027 4.52151 4.74007 4.83101 4.87788 4.94595 5.08998 5.10666 5.22026 5.35032 5.38872 5.40304 5.44440 5.52502 5.55498 5.57192 5.70899 5.72964 5.79120 5.87129 5.94426 5.97511 6.10690 6.16165 6.17671 6.24539 6.38432 6.46941 6.54154 6.63280 6.75869 6.90215 7.01382 7.16078 7.24045 7.49082 7.61531 7.66916 8.31580 8.38693 9.43671 9.96992 10.32386 11.37349 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009303 B = 0.003448 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.112206 B = 8118.482291 C =10629.747562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.169 4.169 3 C -0.213 4.213 4 C -0.037 4.037 5 O -0.169 6.169 6 C 0.009 3.991 7 C -0.063 4.063 8 C 0.516 3.484 9 O -0.529 6.529 10 N -0.710 5.710 11 C 0.141 3.859 12 H 0.104 0.896 13 C -0.086 4.086 14 C -0.106 4.106 15 C -0.116 4.116 16 C -0.132 4.132 17 C -0.129 4.129 18 C -0.080 4.080 19 C -0.092 4.092 20 C 0.207 3.793 21 H 0.069 0.931 22 N -0.711 5.711 23 C -0.246 4.246 24 H 0.072 0.928 25 C -0.006 4.006 26 N -0.925 5.925 27 Si 0.905 3.095 28 H -0.279 1.279 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.145 0.855 35 H 0.201 0.799 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.401 0.599 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.127 0.873 45 H 0.387 0.613 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.991 10.916 8.224 18.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.171 4.171 3 C -0.232 4.232 4 C -0.104 4.104 5 O -0.064 6.064 6 C -0.042 4.042 7 C -0.103 4.103 8 C 0.301 3.699 9 O -0.404 6.404 10 N -0.361 5.361 11 C 0.035 3.965 12 H 0.122 0.878 13 C -0.125 4.125 14 C -0.107 4.107 15 C -0.134 4.134 16 C -0.150 4.150 17 C -0.147 4.147 18 C -0.098 4.098 19 C -0.096 4.096 20 C 0.095 3.905 21 H 0.086 0.914 22 N -0.350 5.350 23 C -0.377 4.377 24 H 0.090 0.910 25 C -0.203 4.203 26 N -0.572 5.572 27 Si 0.736 3.264 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.163 0.837 35 H 0.218 0.782 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.236 0.764 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.145 0.855 45 H 0.222 0.778 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.460 11.097 7.640 18.351 hybrid contribution 0.556 -0.841 0.165 1.022 sum -11.904 10.256 7.805 17.544 Atomic orbital electron populations 1.20168 0.89424 1.02054 1.02196 1.20115 0.96938 0.92018 1.07981 1.21642 0.92645 0.99609 1.09323 1.23938 0.99687 0.80644 1.06171 1.84016 1.28620 1.22738 1.71047 1.21246 0.81220 0.94978 1.06724 1.20084 1.04068 0.89867 0.96246 1.20273 0.76819 0.82097 0.90665 1.90741 1.48922 1.54587 1.46157 1.45808 1.68888 1.12678 1.08725 1.21923 0.96182 0.95795 0.82568 0.87816 1.21338 0.96706 0.96448 0.97972 1.20442 0.96391 0.96560 0.97320 1.20462 0.98567 0.97551 0.96805 1.20876 0.99729 0.94053 1.00331 1.21044 0.95983 0.98972 0.98749 1.20784 0.96982 0.97521 0.94513 1.21676 0.95652 0.93455 0.98797 1.19939 0.85967 0.90170 0.94375 0.91362 1.42424 1.07776 1.17972 1.66843 1.19229 0.95837 0.92653 1.29970 0.90985 1.24762 0.96813 0.98137 1.00635 1.69680 1.09054 1.35026 1.43441 0.86166 0.78927 0.83661 0.77683 1.20461 1.21799 1.21814 0.91335 0.91917 0.91747 0.83681 0.78235 0.86879 0.86145 0.76428 0.90321 0.90823 0.87142 0.86780 0.86628 0.85468 0.77800 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.17 36.01 0.37 -0.42 16 2 C -0.17 -2.10 6.16 -104.74 -0.65 -2.75 16 3 C -0.21 -2.46 10.87 -39.70 -0.43 -2.89 16 4 C -0.04 -0.43 12.09 29.42 0.36 -0.07 16 5 O -0.17 -2.46 10.65 5.71 0.06 -2.40 16 6 C 0.01 0.12 5.81 -35.63 -0.21 -0.09 16 7 C -0.06 -0.70 6.03 -29.04 -0.18 -0.88 16 8 C 0.52 7.70 7.82 -10.98 -0.09 7.61 16 9 O -0.53 -10.24 15.68 5.56 0.09 -10.15 16 10 N -0.71 -9.86 5.14 -52.45 -0.27 -10.13 16 11 C 0.14 2.35 3.13 -66.53 -0.21 2.15 16 12 H 0.10 2.08 7.22 -51.93 -0.37 1.71 16 13 C -0.09 -1.26 6.49 -26.85 -0.17 -1.43 16 14 C -0.11 -1.72 6.14 -104.21 -0.64 -2.36 16 15 C -0.12 -1.70 10.04 -39.53 -0.40 -2.10 16 16 C -0.13 -1.89 10.05 -39.62 -0.40 -2.29 16 17 C -0.13 -2.04 10.05 -39.63 -0.40 -2.43 16 18 C -0.08 -1.47 10.00 -39.54 -0.40 -1.87 16 19 C -0.09 -1.69 5.79 -104.21 -0.60 -2.29 16 20 C 0.21 3.90 3.23 -68.06 -0.22 3.68 16 21 H 0.07 1.23 7.75 -51.92 -0.40 0.83 16 22 N -0.71 -16.93 5.14 -53.55 -0.28 -17.21 16 23 C -0.25 -6.40 9.69 -15.06 -0.15 -6.55 16 24 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 25 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 26 N -0.92 -27.41 13.06 55.49 0.72 -26.68 16 27 Si 0.90 21.65 29.55 -169.99 -5.02 16.63 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 30 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.50 7.15 -51.93 -0.37 0.13 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.20 1.53 8.06 -52.48 -0.42 1.10 16 36 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.12 0.90 7.14 -51.93 -0.37 0.53 16 38 H 0.40 4.41 8.42 -40.82 -0.34 4.07 16 39 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 42 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 43 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 44 H 0.13 2.54 7.79 -52.48 -0.41 2.13 16 45 H 0.39 10.27 7.61 -40.82 -0.31 9.96 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 389.75 15.07 5.87 5.87 Total: -1.00 -33.96 389.75 -9.67 -43.64 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -6.35 Total: 15.69 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -4.50 Total: -15.26 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.18 Total: -54.01 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.15 Total: -12.56 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.96 -9.67 -43.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960307015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.386 kcal (2) G-P(sol) polarization free energy of solvation -33.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds