Wall clock time and date at job start Sat Apr 11 2020 06:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41381 * 126.57424 * 2 1 4 4 C 1.34520 * 106.83580 * 179.72986 * 3 2 1 5 5 O 1.34302 * 108.42210 * 0.26485 * 4 3 2 6 6 C 1.34302 * 109.47622 * 359.97438 * 5 4 3 7 7 C 1.50697 * 125.79016 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47275 * 269.97695 * 7 6 5 9 9 O 1.21282 * 120.00104 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99878 * 179.97438 * 8 7 6 11 11 C 1.46507 * 119.99853 * 180.02562 * 10 8 7 12 12 H 1.09002 * 110.72881 * 31.58966 * 11 10 8 13 13 C 1.54347 * 110.81829 * 267.97008 * 11 10 8 14 14 C 1.51367 * 105.16627 * 215.42634 * 13 11 10 15 15 C 1.38495 * 130.38862 * 197.19188 * 14 13 11 16 16 C 1.38113 * 120.21576 * 180.02562 * 15 14 13 17 17 C 1.38251 * 119.93295 * 359.97379 * 16 15 14 18 18 C 1.38102 * 119.93348 * 0.03485 * 17 16 15 19 19 C 1.38218 * 109.76040 * 17.19279 * 14 13 11 20 20 C 1.51365 * 109.75663 * 359.97438 * 19 14 13 21 21 H 1.09008 * 110.30170 * 101.73732 * 20 19 14 22 22 N 1.46501 * 110.30326 * 223.88758 * 20 19 14 23 23 C 1.36938 * 120.00292 * 270.74965 * 22 20 19 24 24 H 1.08004 * 119.99789 * 359.97438 * 23 22 20 25 25 C 1.38816 * 120.00009 * 179.97438 * 23 22 20 26 26 N 1.31618 * 119.99858 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 119.99844 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47213 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47233 * 120.00372 * 27 25 23 30 30 H 1.48506 * 109.47082 * 240.00371 * 27 25 23 31 31 H 1.09007 * 109.47162 * 90.02696 * 1 2 3 32 32 H 1.08995 * 109.47309 * 210.02375 * 1 2 3 33 33 H 1.09002 * 109.47648 * 330.02473 * 1 2 3 34 34 H 1.08002 * 126.58570 * 359.97438 * 3 2 1 35 35 H 1.08004 * 125.78733 * 180.22473 * 4 3 2 36 36 H 1.08994 * 109.47121 * 29.97794 * 7 6 5 37 37 H 1.09003 * 109.47065 * 149.97439 * 7 6 5 38 38 H 0.96995 * 119.99930 * 359.97438 * 10 8 7 39 39 H 1.09001 * 110.30757 * 334.35330 * 13 11 10 40 40 H 1.09007 * 110.30425 * 96.50857 * 13 11 10 41 41 H 1.08004 * 119.89443 * 0.02562 * 15 14 13 42 42 H 1.07999 * 120.03008 * 180.02562 * 16 15 14 43 43 H 1.07997 * 120.03063 * 179.97438 * 17 16 15 44 44 H 1.08004 * 119.88984 * 180.02562 * 18 17 16 45 45 H 0.96996 * 119.99755 * 90.74627 * 22 20 19 46 46 H 0.96998 * 119.99708 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1354 0.0000 4 6 3.6156 0.6811 0.0061 5 8 3.5848 -0.6616 0.0038 6 6 2.3087 -1.0801 -0.0031 7 6 1.8523 -2.5163 -0.0070 8 6 1.7067 -2.9933 -1.4290 9 8 1.9493 -2.2409 -2.3488 10 7 1.3071 -4.2561 -1.6787 11 6 1.1661 -4.7200 -3.0612 12 1 1.8871 -4.2230 -3.7103 13 6 -0.2755 -4.5034 -3.5682 14 6 -0.5593 -5.6846 -4.4713 15 6 -1.5418 -5.8650 -5.4307 16 6 -1.6087 -7.0462 -6.1433 17 6 -0.6921 -8.0520 -5.8993 18 6 0.2881 -7.8739 -4.9429 19 6 0.3570 -6.6902 -4.2273 20 6 1.3197 -6.2533 -3.1440 21 1 1.0512 -6.7117 -2.1921 22 7 2.6929 -6.6082 -3.5109 23 6 3.2018 -7.8298 -3.1589 24 1 2.5909 -8.5315 -2.6104 25 6 4.5028 -8.1662 -3.5071 26 7 5.2474 -7.3108 -4.1751 27 14 5.1967 -9.8328 -3.0275 28 1 4.1655 -10.6042 -2.2880 29 1 5.5877 -10.5771 -4.2516 30 1 6.3884 -9.6424 -2.1621 31 1 -0.3634 -0.0005 -1.0277 32 1 -0.3634 -0.8897 0.5142 33 1 -0.3634 0.8902 0.5134 34 1 2.0366 2.1691 -0.0004 35 1 4.5060 1.2925 0.0112 36 1 2.5880 -3.1327 0.5095 37 1 0.8917 -2.5937 0.5023 38 1 1.1135 -4.8579 -0.9431 39 1 -0.9732 -4.4913 -2.7308 40 1 -0.3427 -3.5723 -4.1311 41 1 -2.2579 -5.0796 -5.6222 42 1 -2.3758 -7.1836 -6.8910 43 1 -0.7433 -8.9765 -6.4553 44 1 1.0040 -8.6600 -4.7531 45 1 3.2416 -5.9778 -4.0033 46 1 6.1566 -7.5457 -4.4181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960307015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:05 Heat of formation + Delta-G solvation = -4.619247 kcal Electronic energy + Delta-G solvation = -28927.594356 eV Core-core repulsion = 24975.907617 eV Total energy + Delta-G solvation = -3951.686739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.51111 -41.44638 -40.21258 -37.51003 -35.73793 -35.19604 -34.19925 -32.97228 -32.82088 -31.24184 -29.98850 -28.84215 -27.65126 -26.92282 -25.00811 -23.54365 -22.42502 -22.03140 -21.72827 -21.41075 -20.47572 -19.26217 -18.40945 -17.98745 -17.38274 -17.06450 -16.71407 -16.59284 -16.37643 -15.95519 -15.72595 -15.37363 -15.15355 -14.90044 -14.62564 -14.41378 -14.16884 -13.94248 -13.83111 -13.77077 -13.60649 -13.49325 -13.33776 -13.28287 -12.91368 -12.88219 -12.63542 -12.30186 -12.26793 -12.13036 -12.00716 -11.78975 -11.58921 -11.12405 -10.96512 -10.48869 -10.12454 -9.59960 -9.37755 -9.26699 -9.06287 -7.94621 -5.24586 0.54039 0.61127 0.76782 1.46384 1.46774 1.56507 1.60522 1.66210 2.05653 2.36890 2.54718 2.95275 3.37648 3.46676 3.62961 3.72181 3.93636 4.02547 4.09385 4.09867 4.14148 4.18103 4.27795 4.31101 4.36315 4.41504 4.43995 4.66805 4.68226 4.79845 4.86417 4.86726 4.88654 4.96532 4.97204 5.04171 5.19247 5.21597 5.32657 5.34979 5.49087 5.49954 5.66342 5.72070 5.73695 5.90475 6.21677 6.25424 6.26474 6.55380 7.25544 7.30810 8.01205 8.26327 9.28816 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009303 B = 0.003448 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.112206 B = 8118.482291 C =10629.747562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.176 4.176 3 C -0.226 4.226 4 C -0.046 4.046 5 O -0.199 6.199 6 C -0.025 4.025 7 C -0.054 4.054 8 C 0.514 3.486 9 O -0.579 6.579 10 N -0.700 5.700 11 C 0.150 3.850 12 H 0.063 0.937 13 C -0.073 4.073 14 C -0.108 4.108 15 C -0.114 4.114 16 C -0.123 4.123 17 C -0.133 4.133 18 C -0.107 4.107 19 C -0.120 4.120 20 C 0.206 3.794 21 H 0.078 0.922 22 N -0.723 5.723 23 C -0.229 4.229 24 H 0.081 0.919 25 C -0.073 4.073 26 N -0.970 5.970 27 Si 0.968 3.032 28 H -0.261 1.261 29 H -0.298 1.298 30 H -0.296 1.296 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.168 0.832 35 H 0.231 0.769 36 H 0.126 0.874 37 H 0.163 0.837 38 H 0.417 0.583 39 H 0.108 0.892 40 H 0.075 0.925 41 H 0.143 0.857 42 H 0.152 0.848 43 H 0.136 0.864 44 H 0.099 0.901 45 H 0.369 0.631 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.219 11.194 9.218 21.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.178 4.178 3 C -0.245 4.245 4 C -0.113 4.113 5 O -0.096 6.096 6 C -0.075 4.075 7 C -0.093 4.093 8 C 0.302 3.698 9 O -0.458 6.458 10 N -0.351 5.351 11 C 0.043 3.957 12 H 0.081 0.919 13 C -0.111 4.111 14 C -0.109 4.109 15 C -0.132 4.132 16 C -0.140 4.140 17 C -0.150 4.150 18 C -0.126 4.126 19 C -0.123 4.123 20 C 0.096 3.904 21 H 0.095 0.905 22 N -0.361 5.361 23 C -0.361 4.361 24 H 0.099 0.901 25 C -0.265 4.265 26 N -0.621 5.621 27 Si 0.797 3.203 28 H -0.185 1.185 29 H -0.226 1.226 30 H -0.224 1.224 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.186 0.814 35 H 0.248 0.752 36 H 0.144 0.856 37 H 0.180 0.820 38 H 0.255 0.745 39 H 0.126 0.874 40 H 0.094 0.906 41 H 0.161 0.839 42 H 0.169 0.831 43 H 0.154 0.846 44 H 0.117 0.883 45 H 0.201 0.799 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -15.772 11.342 8.690 21.282 hybrid contribution 1.435 -0.858 -0.188 1.682 sum -14.337 10.484 8.502 19.691 Atomic orbital electron populations 1.20252 0.87541 1.03904 1.02098 1.20605 0.98446 0.91998 1.06739 1.22059 0.92618 1.00695 1.09115 1.24695 1.01284 0.80018 1.05327 1.83991 1.29634 1.24195 1.71765 1.21735 0.81182 0.96282 1.08272 1.20183 1.06553 0.88956 0.93614 1.20967 0.75412 0.81590 0.91861 1.90718 1.51098 1.55947 1.48062 1.45698 1.68454 1.12884 1.08104 1.21576 0.96827 0.93708 0.83599 0.91862 1.21257 0.95352 0.95866 0.98645 1.20643 0.96359 0.96029 0.97909 1.20878 0.98277 0.98511 0.95534 1.21317 0.99502 0.93041 1.00177 1.21299 0.95356 1.00459 0.97934 1.20759 0.98057 0.97232 0.96545 1.21525 0.96854 0.94558 0.99365 1.20137 0.83606 0.91678 0.94951 0.90480 1.42575 1.09779 1.16970 1.66794 1.19585 0.95538 0.93157 1.27783 0.90137 1.25516 0.97595 1.01490 1.01876 1.69851 1.09052 1.37088 1.46116 0.85152 0.78204 0.79975 0.76921 1.18505 1.22583 1.22391 0.92225 0.90025 0.90056 0.81409 0.75237 0.85593 0.82001 0.74515 0.87431 0.90641 0.83912 0.83066 0.84624 0.88258 0.79915 0.94247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 10.17 71.24 0.72 -0.66 16 2 C -0.18 -4.19 6.16 -19.94 -0.12 -4.31 16 3 C -0.23 -4.98 10.87 22.19 0.24 -4.74 16 4 C -0.05 -1.06 12.09 66.97 0.81 -0.25 16 5 O -0.20 -5.88 10.65 -2.47 -0.03 -5.91 16 6 C -0.02 -0.66 5.81 24.83 0.14 -0.52 16 7 C -0.05 -1.13 6.03 29.10 0.18 -0.96 16 8 C 0.51 15.20 7.82 87.65 0.69 15.88 16 9 O -0.58 -23.07 15.68 -3.04 -0.05 -23.12 16 10 N -0.70 -18.99 5.14 -438.22 -2.25 -21.24 16 11 C 0.15 5.04 3.13 45.90 0.14 5.18 16 12 H 0.06 2.69 7.22 -2.39 -0.02 2.67 16 13 C -0.07 -2.01 6.49 30.52 0.20 -1.81 16 14 C -0.11 -3.32 6.14 -19.60 -0.12 -3.44 16 15 C -0.11 -2.96 10.04 22.30 0.22 -2.74 16 16 C -0.12 -3.08 10.05 22.24 0.22 -2.86 16 17 C -0.13 -3.95 10.05 22.24 0.22 -3.72 16 18 C -0.11 -4.00 10.00 22.30 0.22 -3.77 16 19 C -0.12 -4.40 5.79 -19.60 -0.11 -4.51 16 20 C 0.21 7.86 3.23 44.91 0.15 8.00 16 21 H 0.08 2.76 7.75 -2.38 -0.02 2.74 16 22 N -0.72 -35.83 5.14 -323.33 -1.66 -37.49 16 23 C -0.23 -12.22 9.69 84.03 0.81 -11.40 16 24 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 25 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 26 N -0.97 -60.10 13.06 21.65 0.28 -59.82 16 27 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 28 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 29 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 30 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 31 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.08 1.05 7.15 -2.39 -0.02 1.03 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.23 3.29 8.06 -2.91 -0.02 3.27 16 36 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.16 1.91 7.14 -2.39 -0.02 1.90 16 38 H 0.42 8.52 8.42 -92.71 -0.78 7.74 16 39 H 0.11 2.36 8.08 -2.39 -0.02 2.34 16 40 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 41 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 42 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 43 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 44 H 0.10 4.14 7.79 -2.91 -0.02 4.12 16 45 H 0.37 20.75 7.61 -92.71 -0.71 20.05 16 46 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -78.47 389.75 2.94 -75.53 By element: Atomic # 1 Polarization: 45.09 SS G_CDS: -0.47 Total: 44.62 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 5.09 Total: -20.28 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -3.63 Total: -118.55 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.07 Total: -29.02 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -78.47 2.94 -75.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960307015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.912 kcal (2) G-P(sol) polarization free energy of solvation -78.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds