Wall clock time and date at job start Sat Apr 11 2020 06:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37891 * 120.01287 * 2 1 4 4 C 1.38643 * 120.65103 * 179.73307 * 3 2 1 5 5 C 1.37880 * 120.20262 * 0.56208 * 4 3 2 6 6 C 1.39070 * 119.62631 * 359.45907 * 5 4 3 7 7 C 1.47662 * 134.26289 * 180.24935 * 6 5 4 8 8 C 1.47079 * 127.14215 * 359.95851 * 7 6 5 9 9 O 1.21650 * 119.99888 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00046 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00029 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47471 * 180.02562 * 11 10 8 13 13 H 1.09003 * 115.50911 * 330.41771 * 12 11 10 14 14 C 1.52997 * 117.44324 * 185.00168 * 12 11 10 15 15 H 1.08995 * 119.54228 * 4.11902 * 14 12 11 16 16 C 1.54390 * 118.11994 * 160.81036 * 14 12 11 17 17 N 1.48145 * 104.62017 * 87.18994 * 16 14 12 18 18 C 1.36934 * 127.84127 * 140.39600 * 17 16 14 19 19 H 1.07994 * 120.00247 * 195.59727 * 18 17 16 20 20 C 1.38818 * 119.99785 * 15.59145 * 18 17 16 21 21 N 1.31618 * 119.99719 * 9.09987 * 20 18 17 22 22 Si 1.86800 * 119.99858 * 189.10148 * 20 18 17 23 23 H 1.48494 * 109.47265 * 59.99843 * 22 20 18 24 24 H 1.48496 * 109.47073 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46865 * 299.99900 * 22 20 18 26 26 C 1.48144 * 104.31992 * 320.41181 * 17 16 14 27 27 C 1.52993 * 117.44330 * 115.75834 * 12 11 10 28 28 H 1.08996 * 119.53929 * 355.88411 * 27 12 11 29 29 C 1.36055 * 105.71748 * 180.02562 * 7 6 5 30 30 O 1.33805 * 109.85833 * 0.02562 * 29 7 6 31 31 C 1.34905 * 111.35729 * 359.97438 * 30 29 7 32 32 H 1.09003 * 109.46954 * 269.98395 * 1 2 3 33 33 H 1.09001 * 109.47161 * 29.97452 * 1 2 3 34 34 H 1.08997 * 109.47303 * 149.98037 * 1 2 3 35 35 H 1.07994 * 119.67080 * 0.02562 * 3 2 1 36 36 H 1.08002 * 119.89265 * 180.28039 * 4 3 2 37 37 H 1.07994 * 120.18773 * 179.73586 * 5 4 3 38 38 H 0.97001 * 120.00073 * 0.02562 * 10 8 7 39 39 H 1.08999 * 109.47233 * 299.99707 * 11 10 8 40 40 H 1.09007 * 109.47363 * 60.00204 * 11 10 8 41 41 H 1.09001 * 110.40688 * 205.97909 * 16 14 12 42 42 H 1.09007 * 110.40894 * 328.40036 * 16 14 12 43 43 H 0.97006 * 119.99169 * 179.97438 * 21 20 18 44 44 H 1.09002 * 110.41216 * 280.79599 * 26 17 16 45 45 H 1.09005 * 110.50664 * 158.42152 * 26 17 16 46 46 H 1.08002 * 125.06513 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1940 0.0000 4 6 3.5831 1.2095 0.0056 5 6 4.2900 0.0257 -0.0005 6 6 3.6045 -1.1844 -0.0009 7 6 4.0166 -2.6023 -0.0017 8 6 5.3903 -3.1279 -0.0034 9 8 6.3348 -2.3612 -0.0046 10 7 5.6026 -4.4587 -0.0035 11 6 6.9709 -4.9822 -0.0057 12 6 6.9319 -6.5118 -0.0060 13 1 6.0654 -6.9593 0.4809 14 6 8.2663 -7.2511 0.1102 15 1 9.1847 -6.6827 0.2564 16 6 8.2432 -8.7278 0.5604 17 7 8.0567 -9.4975 -0.6915 18 6 8.6492 -10.6798 -1.0469 19 1 8.6258 -11.0077 -2.0756 20 6 9.2800 -11.4567 -0.0849 21 7 9.1571 -11.1536 1.1900 22 14 10.3031 -12.9324 -0.5999 23 1 11.4107 -12.4835 -1.4812 24 1 10.8656 -13.5900 0.6069 25 1 9.4458 -13.8970 -1.3345 26 6 7.0840 -8.6978 -1.4719 27 6 7.5019 -7.2314 -1.2298 28 1 7.8510 -6.6482 -2.0819 29 6 2.8618 -3.3218 -0.0022 30 8 1.8106 -2.4940 -0.0023 31 6 2.2019 -1.2029 -0.0013 32 1 -0.3633 -0.0003 1.0277 33 1 -0.3633 0.8902 -0.5134 34 1 -0.3634 -0.8898 -0.5141 35 1 1.6516 2.1263 0.0004 36 1 4.1108 2.1517 0.0101 37 1 5.3698 0.0380 -0.0005 38 1 4.8495 -5.0700 -0.0028 39 1 7.4924 -4.6323 -0.8966 40 1 7.4954 -4.6320 0.8834 41 1 9.1877 -8.9955 1.0341 42 1 7.4116 -8.9042 1.2426 43 1 9.5977 -11.6968 1.8622 44 1 6.0713 -8.8696 -1.1073 45 1 7.1519 -8.9423 -2.5320 46 1 2.8027 -4.4002 -0.0025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978300737.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:25 Heat of formation + Delta-G solvation = 49.445943 kcal Electronic energy + Delta-G solvation = -27662.285929 eV Core-core repulsion = 23712.943633 eV Total energy + Delta-G solvation = -3949.342296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.95000 -39.67788 -38.68154 -38.44364 -35.03633 -33.97360 -33.38178 -31.90758 -30.88058 -29.94746 -27.43860 -27.24417 -27.13761 -25.11847 -23.72325 -22.71412 -22.32485 -21.17846 -20.48576 -19.55441 -19.27120 -18.13428 -17.53568 -16.85128 -16.69305 -16.24190 -16.04464 -15.66599 -15.20682 -14.81329 -14.67621 -14.34632 -14.01747 -13.87521 -13.72962 -13.48383 -13.20370 -13.04835 -12.80064 -12.72905 -12.67733 -12.24561 -12.04041 -11.87881 -11.32858 -11.27515 -11.14235 -10.83746 -10.68924 -10.35482 -10.32985 -10.20995 -10.18023 -9.76382 -9.47093 -9.17857 -9.01387 -8.99222 -8.66333 -8.47401 -6.89584 -5.82253 -3.16625 0.40597 0.96290 1.42924 2.26078 2.95706 3.03436 3.37194 3.42006 3.43065 3.43137 4.01220 4.08813 4.21060 4.36695 4.44407 4.50349 4.81555 4.86048 4.91201 4.99132 5.04968 5.11485 5.20101 5.26029 5.35299 5.38847 5.42869 5.46755 5.52592 5.76181 5.83524 5.85632 5.87949 5.93620 5.95081 6.03349 6.13474 6.19698 6.23295 6.28632 6.52122 6.62509 6.66972 6.69685 6.88465 7.32141 7.36823 7.50290 7.69142 8.07041 8.18531 9.08553 9.71386 10.48212 11.32002 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033436 B = 0.001727 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.217962 B =16206.836514 C =16674.819873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.072 4.072 3 C -0.098 4.098 4 C -0.128 4.128 5 C -0.066 4.066 6 C -0.088 4.088 7 C -0.226 4.226 8 C 0.586 3.414 9 O -0.536 6.536 10 N -0.719 5.719 11 C 0.156 3.844 12 C -0.151 4.151 13 H 0.103 0.897 14 C -0.161 4.161 15 H 0.104 0.896 16 C 0.184 3.816 17 N -0.594 5.594 18 C -0.229 4.229 19 H 0.076 0.924 20 C -0.005 4.005 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.284 1.284 24 H -0.289 1.289 25 H -0.283 1.283 26 C 0.154 3.846 27 C -0.171 4.171 28 H 0.103 0.897 29 C 0.067 3.933 30 O -0.181 6.181 31 C 0.045 3.955 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.138 0.862 38 H 0.399 0.601 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.023 0.977 43 H 0.255 0.745 44 H 0.023 0.977 45 H 0.050 0.950 46 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.984 23.359 -1.410 28.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.073 4.073 3 C -0.116 4.116 4 C -0.146 4.146 5 C -0.084 4.084 6 C -0.089 4.089 7 C -0.230 4.230 8 C 0.373 3.627 9 O -0.414 6.414 10 N -0.370 5.370 11 C 0.033 3.967 12 C -0.170 4.170 13 H 0.121 0.879 14 C -0.181 4.181 15 H 0.122 0.878 16 C 0.058 3.942 17 N -0.317 5.317 18 C -0.357 4.357 19 H 0.094 0.906 20 C -0.202 4.202 21 N -0.562 5.562 22 Si 0.743 3.257 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.210 1.210 26 C 0.028 3.972 27 C -0.191 4.191 28 H 0.121 0.879 29 C -0.002 4.002 30 O -0.080 6.080 31 C -0.001 4.001 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.156 0.844 38 H 0.233 0.767 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.041 0.959 43 H 0.065 0.935 44 H 0.041 0.959 45 H 0.068 0.932 46 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -16.417 23.575 -1.322 28.758 hybrid contribution 0.396 -1.166 -0.220 1.251 sum -16.021 22.408 -1.542 27.589 Atomic orbital electron populations 1.20750 0.90218 1.03222 1.02753 1.18792 0.96245 0.88272 1.03963 1.20859 0.94232 0.96392 1.00091 1.21110 0.93924 0.98096 1.01510 1.20717 1.00982 0.89795 0.96916 1.19402 0.92283 0.92740 1.04518 1.21026 0.93966 0.92853 1.15185 1.17065 0.86924 0.82178 0.76538 1.90788 1.43354 1.57221 1.50015 1.45867 1.09827 1.06075 1.75266 1.20908 0.81848 0.91552 1.02362 1.22524 0.99485 0.91671 1.03320 0.87915 1.24241 0.93176 0.99615 1.01077 0.87833 1.21069 1.01725 0.82823 0.88584 1.45191 1.47160 1.22526 1.16870 1.18949 1.28730 0.94817 0.93179 0.90632 1.24899 1.01651 0.98549 0.95144 1.69886 1.46504 1.40801 0.98993 0.86187 0.80196 0.82100 0.77197 1.21052 1.21520 1.20988 1.21133 0.92581 0.87485 0.96021 1.24007 1.05338 0.98391 0.91406 0.87890 1.24526 0.83444 0.96073 0.96118 1.83835 1.34627 1.14684 1.74863 1.19364 0.92379 0.83321 1.05049 0.90871 0.90979 0.91288 0.84669 0.84992 0.84410 0.76695 0.91197 0.90866 0.89158 0.95862 0.93481 0.95892 0.93194 0.76533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.01 36.01 0.36 -0.31 16 2 C -0.07 -0.62 5.89 -104.50 -0.62 -1.23 16 3 C -0.10 -0.73 9.66 -39.56 -0.38 -1.11 16 4 C -0.13 -1.07 10.04 -39.56 -0.40 -1.47 16 5 C -0.07 -0.73 9.88 -39.40 -0.39 -1.12 16 6 C -0.09 -1.05 6.29 -104.98 -0.66 -1.71 16 7 C -0.23 -2.56 6.31 -103.25 -0.65 -3.21 16 8 C 0.59 7.72 7.80 -12.68 -0.10 7.62 16 9 O -0.54 -8.95 16.28 5.23 0.09 -8.86 16 10 N -0.72 -8.06 5.55 -61.49 -0.34 -8.40 16 11 C 0.16 2.04 5.95 -4.04 -0.02 2.02 16 12 C -0.15 -2.20 5.39 -90.62 -0.49 -2.69 16 13 H 0.10 1.46 8.04 -51.93 -0.42 1.04 16 14 C -0.16 -2.94 6.85 -89.22 -0.61 -3.56 16 15 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 16 C 0.18 4.31 5.70 -2.41 -0.01 4.30 16 17 N -0.59 -14.97 3.38 -168.85 -0.57 -15.54 16 18 C -0.23 -6.31 10.35 -15.06 -0.16 -6.46 16 19 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 20 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 21 N -0.92 -26.53 10.86 55.49 0.60 -25.93 16 22 Si 0.91 21.75 29.56 -169.99 -5.03 16.72 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.15 3.13 7.04 -2.41 -0.02 3.11 16 27 C -0.17 -2.92 6.74 -89.22 -0.60 -3.52 16 28 H 0.10 1.63 8.12 -51.93 -0.42 1.21 16 29 C 0.07 0.55 11.52 29.95 0.34 0.90 16 30 O -0.18 -1.74 10.53 5.35 0.06 -1.69 16 31 C 0.05 0.48 7.05 -38.56 -0.27 0.21 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 34 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 35 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.14 1.60 7.54 -52.49 -0.40 1.21 16 38 H 0.40 3.28 7.33 -40.82 -0.30 2.98 16 39 H 0.07 0.97 7.94 -51.93 -0.41 0.55 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.09 2.39 6.51 -51.93 -0.34 2.05 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.22 0.82 7.41 -52.49 -0.39 0.43 16 LS Contribution 385.54 15.07 5.81 5.81 Total: -1.00 -33.83 385.54 -10.59 -44.42 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.44 Total: 1.94 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -4.77 Total: -8.47 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.31 Total: -49.86 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.14 Total: -10.55 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.83 -10.59 -44.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978300737.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.863 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds