Wall clock time and date at job start Sat Apr 11 2020 06:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38741 * 119.79420 * 2 1 4 4 C 1.37851 * 120.68943 * 179.66851 * 3 2 1 5 5 C 1.38946 * 119.81216 * 0.55192 * 4 3 2 6 6 O 1.34806 * 133.49187 * 179.34088 * 5 4 3 7 7 C 1.34456 * 110.88660 * 180.02562 * 6 5 4 8 8 C 1.33991 * 110.15493 * 359.97438 * 7 6 5 9 9 C 1.50700 * 126.90686 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47057 * 265.02498 * 9 8 7 11 11 O 1.21274 * 119.99963 * 359.97438 * 10 9 8 12 12 N 1.34771 * 119.99835 * 180.02562 * 10 9 8 13 13 C 1.49074 * 127.54792 * 1.21722 * 12 10 9 14 14 C 1.56008 * 105.20962 * 182.01290 * 13 12 10 15 15 H 1.09002 * 116.89738 * 158.53650 * 14 13 12 16 16 C 1.57088 * 99.61125 * 32.13440 * 14 13 12 17 17 C 1.49293 * 126.94560 * 180.02562 * 12 10 9 18 18 H 1.09002 * 116.15088 * 16.70085 * 17 12 10 19 19 C 1.56019 * 104.86948 * 246.89813 * 17 12 10 20 20 N 1.47871 * 105.10436 * 288.58245 * 19 17 12 21 21 C 1.36935 * 126.94623 * 182.00341 * 20 19 17 22 22 H 1.07998 * 120.00548 * 180.02562 * 21 20 19 23 23 C 1.38818 * 119.99717 * 359.97438 * 21 20 19 24 24 N 1.31620 * 120.00038 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99746 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47099 * 60.00342 * 25 23 21 27 27 H 1.48508 * 109.47141 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47368 * 300.00131 * 25 23 21 29 29 C 1.40488 * 119.22385 * 359.60137 * 5 4 3 30 30 C 1.36738 * 119.78966 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47473 * 269.97783 * 1 2 3 32 32 H 1.09002 * 109.47074 * 29.97849 * 1 2 3 33 33 H 1.08998 * 109.47247 * 149.97666 * 1 2 3 34 34 H 1.08006 * 119.65562 * 0.04549 * 3 2 1 35 35 H 1.07994 * 120.09489 * 179.89522 * 4 3 2 36 36 H 1.08001 * 124.92164 * 179.97438 * 7 6 5 37 37 H 1.09002 * 109.46963 * 145.02392 * 9 8 7 38 38 H 1.08995 * 109.47220 * 25.03008 * 9 8 7 39 39 H 1.09000 * 110.82445 * 62.77373 * 13 12 10 40 40 H 1.08998 * 109.78008 * 300.70752 * 13 12 10 41 41 H 1.08994 * 112.37011 * 191.71352 * 16 14 13 42 42 H 1.09002 * 112.36505 * 64.27228 * 16 14 13 43 43 H 1.09004 * 110.31741 * 47.48407 * 19 17 12 44 44 H 1.09001 * 110.31959 * 169.67516 * 19 17 12 45 45 H 0.97000 * 119.99708 * 179.97438 * 24 23 21 46 46 H 1.08000 * 120.14404 * 359.94816 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2040 0.0000 4 6 3.5747 1.2256 0.0069 5 6 4.2842 0.0310 0.0022 6 8 5.5989 -0.2673 -0.0046 7 6 5.7884 -1.5984 -0.0073 8 6 4.6082 -2.2328 -0.0018 9 6 4.3816 -3.7227 -0.0030 10 6 4.1764 -4.1984 -1.4181 11 8 4.2103 -3.4057 -2.3352 12 7 3.9542 -5.5047 -1.6643 13 6 3.8530 -6.6120 -0.6713 14 6 3.6429 -7.9044 -1.5194 15 1 3.8983 -8.8522 -1.0454 16 6 4.4677 -7.5156 -2.7985 17 6 3.7327 -6.1418 -2.9961 18 1 4.0270 -5.5533 -3.8651 19 6 2.2519 -6.6321 -2.9641 20 7 2.2461 -7.7800 -2.0320 21 6 1.1760 -8.5695 -1.7052 22 1 1.2990 -9.3835 -1.0062 23 6 -0.0671 -8.3228 -2.2716 24 7 -0.2171 -7.3304 -3.1231 25 14 -1.5270 -9.3993 -1.8252 26 1 -1.7756 -9.3150 -0.3636 27 1 -2.7301 -8.9310 -2.5592 28 1 -1.2361 -10.8071 -2.1975 29 6 3.5804 -1.1849 -0.0009 30 6 2.1863 -1.1867 -0.0005 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8897 -0.5142 34 1 1.6474 2.1341 0.0007 35 1 4.1015 2.1683 0.0051 36 1 6.7523 -2.0857 -0.0131 37 1 3.4978 -3.9562 0.5907 38 1 5.2499 -4.2226 0.4261 39 1 3.0066 -6.4564 -0.0023 40 1 4.7786 -6.6806 -0.0997 41 1 4.2951 -8.2016 -3.6278 42 1 5.5294 -7.3909 -2.5854 43 1 1.5993 -5.8412 -2.5944 44 1 1.9369 -6.9501 -3.9580 45 1 -1.0857 -7.1583 -3.5191 46 1 1.6452 -2.1214 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032428921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:39 Heat of formation + Delta-G solvation = 51.233572 kcal Electronic energy + Delta-G solvation = -29464.904135 eV Core-core repulsion = 25515.639356 eV Total energy + Delta-G solvation = -3949.264779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.42949 -39.96877 -38.22826 -37.88455 -33.84368 -33.59906 -32.15767 -31.61104 -30.20750 -29.13127 -28.58691 -27.52093 -26.76983 -25.21578 -23.51291 -23.06041 -21.54859 -21.19910 -19.90668 -19.73041 -18.40230 -17.25906 -17.10179 -16.99932 -16.33797 -15.93359 -15.68393 -15.29102 -15.03545 -14.46932 -14.16632 -13.98228 -13.90903 -13.65449 -13.54671 -13.31234 -12.83294 -12.61508 -12.23003 -12.17171 -11.98319 -11.87609 -11.67437 -11.65286 -11.52619 -11.32853 -11.02984 -10.87505 -10.82946 -10.79433 -10.61586 -10.28361 -10.11777 -10.03179 -9.65524 -9.38800 -8.72793 -8.41372 -8.11353 -8.00806 -6.95677 -5.78955 -3.13902 0.94168 1.35623 2.30735 2.81399 3.06088 3.35473 3.39873 3.41983 3.43734 3.71973 4.39570 4.42419 4.57096 4.79968 4.85266 4.86065 5.04434 5.15974 5.18485 5.27006 5.29629 5.35514 5.43209 5.47394 5.52997 5.54005 5.58612 5.62012 5.69891 5.76708 5.89001 5.92039 5.96776 6.15123 6.21119 6.24528 6.26727 6.39156 6.42036 6.49042 6.56285 6.57006 6.66508 6.67591 7.18103 7.39943 7.47034 7.69455 8.06603 8.10855 8.62241 9.07651 9.68665 10.37781 11.32903 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012470 B = 0.003271 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.821576 B = 8557.352485 C =10193.222163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.104 4.104 3 C -0.096 4.096 4 C -0.107 4.107 5 C 0.045 3.955 6 O -0.194 6.194 7 C 0.012 3.988 8 C -0.149 4.149 9 C -0.065 4.065 10 C 0.528 3.472 11 O -0.546 6.546 12 N -0.610 5.610 13 C 0.085 3.915 14 C 0.140 3.860 15 H 0.107 0.893 16 C -0.152 4.152 17 C 0.098 3.902 18 H 0.111 0.889 19 C 0.175 3.825 20 N -0.598 5.598 21 C -0.234 4.234 22 H 0.080 0.920 23 C -0.005 4.005 24 N -0.919 5.919 25 Si 0.912 3.088 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.284 1.284 29 C -0.106 4.106 30 C -0.064 4.064 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.205 0.795 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.046 0.954 44 H 0.055 0.945 45 H 0.255 0.745 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.877 11.351 8.466 17.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.104 4.104 3 C -0.114 4.114 4 C -0.125 4.125 5 C -0.002 4.002 6 O -0.096 6.096 7 C -0.053 4.053 8 C -0.151 4.151 9 C -0.105 4.105 10 C 0.316 3.684 11 O -0.424 6.424 12 N -0.344 5.344 13 C -0.040 4.040 14 C 0.031 3.969 15 H 0.125 0.875 16 C -0.191 4.191 17 C -0.005 4.005 18 H 0.129 0.871 19 C 0.050 3.950 20 N -0.322 5.322 21 C -0.362 4.362 22 H 0.098 0.902 23 C -0.202 4.202 24 N -0.565 5.565 25 Si 0.743 3.257 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.211 1.211 29 C -0.107 4.107 30 C -0.082 4.082 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.222 0.778 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.805 12.051 7.935 17.445 hybrid contribution -0.901 -0.738 0.204 1.183 sum 8.904 11.312 8.138 16.537 Atomic orbital electron populations 1.20765 0.90677 1.03112 1.02287 1.19506 0.96448 0.92589 1.01825 1.20767 0.92454 0.97862 1.00313 1.19842 0.93070 0.94452 1.05174 1.19566 0.81303 0.95504 1.03850 1.83971 1.24451 1.24579 1.76586 1.23611 0.99511 0.79622 1.02526 1.20469 0.91896 0.94392 1.08367 1.19942 1.04556 0.90316 0.95698 1.19975 0.77059 0.80676 0.90647 1.90689 1.52234 1.53016 1.46467 1.49507 1.69359 1.05917 1.09666 1.23492 0.99737 0.88706 0.92023 1.23172 0.86815 0.94346 0.92543 0.87536 1.24163 0.97693 0.97001 1.00284 1.24280 0.99094 0.91542 0.85556 0.87145 1.21904 0.88668 0.89526 0.94903 1.45251 1.03225 1.33888 1.49838 1.18998 0.86474 1.08660 1.22022 0.90206 1.24820 0.97664 0.98485 0.99192 1.69911 1.23292 1.30802 1.32524 0.86203 0.82098 0.79710 0.77730 1.21155 1.21609 1.21101 1.19692 0.94212 0.92210 1.04621 1.20203 0.91554 0.98324 0.98149 0.91243 0.91531 0.91186 0.85013 0.85255 0.77817 0.88054 0.88180 0.90960 0.92793 0.89866 0.91703 0.93560 0.92657 0.93519 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.00 36.00 0.36 -0.79 16 2 C -0.10 -1.32 5.85 -104.98 -0.61 -1.93 16 3 C -0.10 -1.09 9.66 -39.54 -0.38 -1.47 16 4 C -0.11 -1.30 10.07 -39.46 -0.40 -1.70 16 5 C 0.04 0.66 7.42 -38.47 -0.29 0.37 16 6 O -0.19 -2.74 10.58 3.90 0.04 -2.70 16 7 C 0.01 0.15 11.89 29.24 0.35 0.50 16 8 C -0.15 -2.17 4.85 -102.66 -0.50 -2.67 16 9 C -0.07 -0.89 5.59 -29.04 -0.16 -1.06 16 10 C 0.53 9.49 7.90 -10.99 -0.09 9.40 16 11 O -0.55 -11.85 16.38 5.56 0.09 -11.75 16 12 N -0.61 -10.93 3.01 -155.83 -0.47 -11.40 16 13 C 0.09 1.38 6.10 -1.01 -0.01 1.37 16 14 C 0.14 2.50 5.53 -62.54 -0.35 2.16 16 15 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 16 C -0.15 -2.52 6.80 -22.31 -0.15 -2.67 16 17 C 0.10 1.89 5.19 -62.56 -0.32 1.56 16 18 H 0.11 2.12 8.06 -51.93 -0.42 1.70 16 19 C 0.18 4.17 4.78 -1.67 -0.01 4.16 16 20 N -0.60 -14.08 3.02 -156.32 -0.47 -14.55 16 21 C -0.23 -6.10 10.38 -15.06 -0.16 -6.26 16 22 H 0.08 1.98 7.83 -52.49 -0.41 1.56 16 23 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 24 N -0.92 -26.51 10.56 55.49 0.59 -25.93 16 25 Si 0.91 21.41 29.55 -169.99 -5.02 16.38 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 29 C -0.11 -1.67 6.38 -105.16 -0.67 -2.34 16 30 C -0.06 -0.96 9.68 -39.69 -0.38 -1.35 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 35 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.21 1.73 8.06 -52.49 -0.42 1.30 16 37 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.05 1.27 7.68 -51.93 -0.40 0.88 16 44 H 0.06 1.46 7.46 -51.93 -0.39 1.07 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 380.82 15.07 5.74 5.74 Total: -1.00 -33.55 380.82 -10.03 -43.58 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.66 Total: 3.56 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -3.86 Total: -2.93 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.36 Total: -51.88 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.13 Total: -14.46 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.55 -10.03 -43.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032428921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.814 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds