Wall clock time and date at job start Sat Apr 11 2020 06:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50699 * 115.55021 * 2 1 4 4 O 1.21281 * 119.99588 * 214.33323 * 3 2 1 5 5 N 1.34776 * 120.00256 * 34.32187 * 3 2 1 6 6 C 1.46502 * 120.00127 * 180.02562 * 5 3 2 7 7 C 1.52989 * 109.47119 * 180.02562 * 6 5 3 8 8 C 1.53009 * 109.46967 * 180.02562 * 7 6 5 9 9 H 1.08999 * 110.88448 * 308.87817 * 8 7 6 10 10 C 1.55160 * 111.00399 * 184.99880 * 8 7 6 11 11 C 1.54316 * 102.94268 * 206.42607 * 10 8 7 12 12 N 1.47026 * 107.27365 * 22.19228 * 11 10 8 13 13 C 1.34771 * 125.65100 * 180.79395 * 12 11 10 14 14 O 1.21280 * 119.99952 * 180.02562 * 13 12 11 15 15 C 1.50705 * 119.99988 * 0.02691 * 13 12 11 16 16 S 1.80993 * 109.46992 * 179.97438 * 15 13 12 17 17 C 1.76201 * 100.00132 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99797 * 0.02562 * 17 16 15 19 19 C 1.38798 * 120.00331 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00111 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99955 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47087 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46872 * 120.00284 * 21 19 17 24 24 H 1.48499 * 109.47121 * 239.99977 * 21 19 17 25 25 C 1.47425 * 108.70074 * 1.05989 * 12 11 10 26 26 C 1.53004 * 117.51210 * 145.69502 * 2 1 3 27 27 C 1.52993 * 117.49763 * 214.32284 * 2 1 3 28 28 H 1.08998 * 109.46736 * 85.58501 * 1 2 3 29 29 H 1.08997 * 109.47325 * 205.58743 * 1 2 3 30 30 H 1.08997 * 109.46751 * 325.59016 * 1 2 3 31 31 H 0.96994 * 119.99994 * 0.02562 * 5 3 2 32 32 H 1.08996 * 109.46777 * 60.00129 * 6 5 3 33 33 H 1.09003 * 109.46996 * 300.00758 * 6 5 3 34 34 H 1.08996 * 109.47596 * 60.00134 * 7 6 5 35 35 H 1.09003 * 109.47400 * 300.00014 * 7 6 5 36 36 H 1.08997 * 110.71793 * 88.05937 * 10 8 7 37 37 H 1.09003 * 110.87062 * 324.86280 * 10 8 7 38 38 H 1.09004 * 109.88447 * 262.78098 * 11 10 8 39 39 H 1.09000 * 109.88516 * 141.60887 * 11 10 8 40 40 H 1.08993 * 109.46871 * 299.99760 * 15 13 12 41 41 H 1.09000 * 109.46865 * 59.99842 * 15 13 12 42 42 H 0.97001 * 120.00554 * 179.97438 * 20 19 17 43 43 H 1.09001 * 110.36478 * 94.71036 * 25 12 11 44 44 H 1.08998 * 110.36859 * 217.03414 * 25 12 11 45 45 H 1.08999 * 117.49527 * 214.96808 * 26 2 1 46 46 H 1.08993 * 117.49858 * 359.97438 * 26 2 1 47 47 H 1.09001 * 117.49945 * 359.97438 * 27 2 1 48 48 H 1.08999 * 117.50151 * 144.99556 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1801 1.3596 0.0000 4 8 3.2241 1.5326 -0.5924 5 7 1.6011 2.3834 0.6581 6 6 2.2327 3.7053 0.6576 7 6 1.3783 4.6790 1.4715 8 6 2.0376 6.0597 1.4705 9 1 3.0851 5.9903 1.7637 10 6 1.2670 7.0447 2.3888 11 6 1.5906 8.4203 1.7689 12 7 1.9814 8.1880 0.3707 13 6 2.3546 9.1385 -0.5089 14 8 2.6570 8.8307 -1.6423 15 6 2.3962 10.5838 -0.0840 16 16 2.9320 11.6071 -1.4775 17 6 2.8911 13.1984 -0.7222 18 1 2.5939 13.2981 0.3114 19 6 3.2417 14.3238 -1.4550 20 7 3.6044 14.2023 -2.7145 21 14 3.1976 16.0109 -0.6543 22 1 2.7590 15.8772 0.7581 23 1 4.5539 16.6142 -0.6960 24 1 2.2454 16.8825 -1.3885 25 6 1.8912 6.7439 0.0884 26 6 2.2369 -1.1210 0.7648 27 6 2.2365 -1.1208 -0.7652 28 1 -0.3633 0.0791 -1.0246 29 1 -0.3634 -0.9268 0.4438 30 1 -0.3633 0.8478 0.5807 31 1 0.7662 2.2450 1.1320 32 1 2.3190 4.0662 -0.3672 33 1 3.2252 3.6339 1.1025 34 1 1.2922 4.3179 2.4963 35 1 0.3856 4.7505 1.0270 36 1 1.6365 6.9865 3.4126 37 1 0.1952 6.8491 2.3554 38 1 2.4132 8.8870 2.3109 39 1 0.7091 9.0603 1.8059 40 1 1.4026 10.8970 0.2363 41 1 3.0977 10.6996 0.7422 42 1 3.8491 14.9888 -3.2268 43 1 0.9241 6.5034 -0.3534 44 1 2.6993 6.4358 -0.5749 45 1 3.1721 -0.8750 1.2678 46 1 1.6119 -1.8583 1.2684 47 1 1.6112 -1.8584 -1.2683 48 1 3.1713 -0.8748 -1.2688 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001059198739.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:44 Heat of formation + Delta-G solvation = -58.965137 kcal Electronic energy + Delta-G solvation = -26121.761274 eV Core-core repulsion = 22303.161871 eV Total energy + Delta-G solvation = -3818.599402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.55808 -39.86799 -37.76383 -37.10083 -35.58691 -33.09831 -32.42307 -30.44554 -29.60840 -29.11079 -27.40960 -25.50653 -24.64885 -23.32352 -22.94754 -22.18706 -20.83852 -19.69219 -19.32475 -17.72282 -17.46094 -16.65672 -16.50085 -16.29256 -15.87165 -15.27807 -14.97957 -14.80101 -14.66104 -14.40292 -14.14718 -13.88284 -13.61555 -13.57509 -13.19082 -13.03534 -12.83562 -12.78235 -12.59732 -12.48216 -12.33745 -11.96427 -11.85193 -11.75488 -11.40683 -11.07205 -11.06773 -11.01631 -10.96381 -10.94850 -10.74821 -10.51382 -10.10714 -9.79867 -9.44583 -9.39530 -9.06804 -8.49388 -8.21762 -6.49396 -6.20963 -3.91598 2.13413 2.69381 2.93573 3.07923 3.21899 3.26719 3.31649 3.33804 3.62957 4.08559 4.10801 4.20891 4.22062 4.33055 4.36347 4.39091 4.44417 4.74630 4.79476 5.00531 5.08186 5.08607 5.09861 5.13372 5.14188 5.15350 5.19658 5.26190 5.33998 5.42599 5.47343 5.52485 5.55074 5.62292 5.64203 5.65611 5.68750 5.73584 5.82962 5.95671 5.99075 6.03955 6.14827 6.43791 7.09405 7.60335 7.68481 7.86506 8.36058 8.57403 9.24267 10.86555 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029624 B = 0.001626 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.963624 B =17217.624546 C =17828.380796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.171 4.171 3 C 0.548 3.452 4 O -0.536 6.536 5 N -0.727 5.727 6 C 0.114 3.886 7 C -0.118 4.118 8 C -0.099 4.099 9 H 0.090 0.910 10 C -0.124 4.124 11 C 0.101 3.899 12 N -0.627 5.627 13 C 0.547 3.453 14 O -0.515 6.515 15 C -0.146 4.146 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.111 3.889 26 C -0.150 4.150 27 C -0.144 4.144 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.400 0.600 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.268 0.732 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.098 0.902 46 H 0.104 0.896 47 H 0.103 0.897 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.312 -29.456 14.486 34.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.174 4.174 3 C 0.334 3.666 4 O -0.412 6.412 5 N -0.379 5.379 6 C -0.009 4.009 7 C -0.156 4.156 8 C -0.119 4.119 9 H 0.108 0.892 10 C -0.162 4.162 11 C -0.022 4.022 12 N -0.365 5.365 13 C 0.336 3.664 14 O -0.389 6.389 15 C -0.297 4.297 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.012 4.012 26 C -0.187 4.187 27 C -0.181 4.181 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.235 0.765 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.117 0.883 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.011 -29.584 12.138 32.966 hybrid contribution -0.841 1.512 2.130 2.745 sum -8.853 -28.072 14.268 32.710 Atomic orbital electron populations 1.21352 0.90359 1.02572 1.02795 1.21512 0.95974 0.89573 1.10312 1.19497 0.84301 0.84804 0.78028 1.90732 1.23208 1.83875 1.43420 1.45947 1.27469 1.10098 1.54393 1.21470 0.96750 0.81183 1.01472 1.21723 0.99430 0.93657 1.00765 1.22313 1.00741 0.93249 0.95598 0.89170 1.22678 1.00897 0.93485 0.99164 1.21990 1.00416 0.97540 0.82279 1.48497 1.69199 1.06811 1.11986 1.20035 0.75684 0.86461 0.84215 1.90715 1.47032 1.82226 1.18946 1.23503 1.05070 0.94299 1.06808 1.85420 1.87256 0.99516 1.11289 1.22901 1.52943 0.92182 1.00272 0.90886 1.24994 0.94535 0.99242 0.94818 1.70028 1.42295 1.30333 1.07589 0.86112 0.77945 0.82206 0.79198 1.19626 1.20560 1.20560 1.22246 1.02085 0.80512 0.96403 1.23107 1.02030 0.98251 0.95319 1.23044 1.02739 0.98026 0.94322 0.91413 0.91364 0.91977 0.76469 0.90871 0.91198 0.90610 0.90687 0.89920 0.90392 0.91247 0.91264 0.89338 0.89322 0.92228 0.91677 0.90319 0.88319 0.87729 0.87842 0.87343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 9.79 37.16 0.36 -0.10 16 2 C -0.17 -1.12 2.61 -155.66 -0.41 -1.53 16 3 C 0.55 5.26 7.39 -10.99 -0.08 5.18 16 4 O -0.54 -7.56 16.26 5.56 0.09 -7.47 16 5 N -0.73 -5.06 5.45 -60.30 -0.33 -5.39 16 6 C 0.11 0.88 5.58 -4.05 -0.02 0.86 16 7 C -0.12 -0.64 4.84 -26.73 -0.13 -0.76 16 8 C -0.10 -0.76 3.01 -88.46 -0.27 -1.02 16 9 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 10 C -0.12 -0.85 6.42 -24.90 -0.16 -1.01 16 11 C 0.10 1.05 6.49 -3.07 -0.02 1.03 16 12 N -0.63 -9.14 3.33 -170.52 -0.57 -9.71 16 13 C 0.55 10.87 7.87 -10.99 -0.09 10.79 16 14 O -0.52 -12.35 16.12 5.56 0.09 -12.26 16 15 C -0.15 -3.06 5.35 36.01 0.19 -2.87 16 16 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 17 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 21 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.11 1.30 5.86 -2.53 -0.01 1.29 16 26 C -0.15 -0.81 9.88 -26.73 -0.26 -1.08 16 27 C -0.14 -0.94 9.76 -26.73 -0.26 -1.20 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.19 7.90 -51.93 -0.41 -0.22 16 30 H 0.06 0.18 6.38 -51.93 -0.33 -0.16 16 31 H 0.40 1.62 6.77 -40.82 -0.28 1.35 16 32 H 0.07 0.71 7.75 -51.93 -0.40 0.31 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.37 7.96 -51.93 -0.41 -0.04 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.45 8.04 -51.93 -0.42 0.04 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 41 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.07 0.73 7.91 -51.93 -0.41 0.32 16 44 H 0.08 1.06 8.04 -51.93 -0.42 0.65 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.10 0.36 8.05 -51.93 -0.42 -0.06 16 47 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.11 0.91 7.67 -51.93 -0.40 0.51 16 LS Contribution 407.80 15.07 6.15 6.15 Total: -1.00 -37.89 407.80 -10.12 -48.01 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -8.09 Total: -2.73 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -0.96 Total: -3.52 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: -0.16 Total: -40.76 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.18 Total: -19.73 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -37.89 -10.12 -48.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059198739.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.958 kcal (2) G-P(sol) polarization free energy of solvation -37.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds