Wall clock time and date at job start Sat Apr 11 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 115.55786 * 2 1 4 4 C 1.52994 * 117.50610 * 214.31147 * 2 1 3 5 5 C 1.52996 * 117.50298 * 145.68196 * 2 1 3 6 6 H 1.09004 * 117.49827 * 359.97438 * 5 2 1 7 7 C 1.50696 * 117.50327 * 214.98473 * 5 2 1 8 8 O 1.21284 * 120.00109 * 0.02562 * 7 5 2 9 9 N 1.34777 * 120.00137 * 179.97438 * 7 5 2 10 10 C 1.46506 * 119.99873 * 179.97438 * 9 7 5 11 11 H 1.08998 * 109.49732 * 324.94052 * 10 9 7 12 12 C 1.53040 * 109.49674 * 204.83812 * 10 9 7 13 13 C 1.53036 * 109.53817 * 178.68212 * 12 10 9 14 14 C 1.53195 * 109.31097 * 61.37189 * 13 12 10 15 15 N 1.46933 * 108.77321 * 305.36542 * 14 13 12 16 16 C 1.34779 * 120.62815 * 233.58710 * 15 14 13 17 17 O 1.21284 * 119.99998 * 180.02562 * 16 15 14 18 18 C 1.50703 * 120.00054 * 0.02562 * 16 15 14 19 19 S 1.81003 * 109.46903 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99554 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00492 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99542 * 179.97438 * 20 19 18 23 23 N 1.31629 * 120.00401 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99831 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47364 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47096 * 120.00373 * 24 22 20 27 27 H 1.48502 * 109.47562 * 240.00200 * 24 22 20 28 28 C 1.46925 * 118.74100 * 53.60457 * 15 14 13 29 29 H 1.08996 * 109.47676 * 274.31027 * 1 2 3 30 30 H 1.08998 * 109.47354 * 34.31839 * 1 2 3 31 31 H 1.09002 * 109.46511 * 154.31155 * 1 2 3 32 32 H 1.08998 * 109.47543 * 205.68895 * 3 2 1 33 33 H 1.09002 * 109.47018 * 325.68723 * 3 2 1 34 34 H 1.09006 * 109.47074 * 85.68523 * 3 2 1 35 35 H 1.09001 * 117.50388 * 145.02200 * 4 2 1 36 36 H 1.08997 * 117.49865 * 359.97438 * 4 2 1 37 37 H 0.96995 * 120.00018 * 0.27749 * 9 7 5 38 38 H 1.08998 * 109.46479 * 298.70970 * 12 10 9 39 39 H 1.09004 * 109.45763 * 58.66362 * 12 10 9 40 40 H 1.08997 * 109.50197 * 301.42242 * 13 12 10 41 41 H 1.09003 * 109.49991 * 181.31824 * 13 12 10 42 42 H 1.08994 * 109.59051 * 185.58182 * 14 13 12 43 43 H 1.08997 * 109.59335 * 65.14735 * 14 13 12 44 44 H 1.08998 * 109.47093 * 300.00352 * 18 16 15 45 45 H 1.09001 * 109.46892 * 59.99953 * 18 16 15 46 46 H 0.96991 * 120.00058 * 180.02562 * 23 22 20 47 47 H 1.08997 * 109.58761 * 186.60583 * 28 15 14 48 48 H 1.09002 * 109.58470 * 66.17908 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2366 -1.1209 -0.7649 5 6 2.2365 -1.1208 0.7651 6 1 1.6113 -1.8581 1.2689 7 6 3.5292 -0.7809 1.4609 8 8 3.9715 0.3469 1.4017 9 7 4.1935 -1.7298 2.1500 10 6 5.4505 -1.3994 2.8260 11 1 6.0007 -0.6680 2.2340 12 6 6.2933 -2.6669 2.9853 13 6 7.6207 -2.3172 3.6619 14 6 7.3436 -1.7427 5.0547 15 7 6.4165 -0.6104 4.9234 16 6 6.7230 0.5925 5.4482 17 8 5.9491 1.5193 5.3334 18 6 8.0275 0.7861 6.1776 19 16 8.1454 2.4960 6.7594 20 6 9.7181 2.4416 7.5521 21 1 10.2856 1.5228 7.5636 22 6 10.2282 3.5800 8.1608 23 7 9.5368 4.7000 8.1464 24 14 11.8951 3.5222 9.0018 25 1 12.4645 2.1561 8.8790 26 1 12.8091 4.4987 8.3567 27 1 11.7374 3.8659 10.4378 28 6 5.1487 -0.8145 4.2093 29 1 -0.3634 0.0772 1.0247 30 1 -0.3634 0.8487 -0.5794 31 1 -0.3632 -0.9261 -0.4455 32 1 3.1823 1.3086 -0.4455 33 1 1.5810 2.0743 -0.5793 34 1 2.2771 1.7415 1.0248 35 1 3.1717 -0.8750 -1.2682 36 1 1.6115 -1.8586 -1.2679 37 1 3.8415 -2.6325 2.1947 38 1 5.7524 -3.3881 3.5979 39 1 6.4887 -3.0987 2.0037 40 1 8.1510 -1.5774 3.0622 41 1 8.2302 -3.2162 3.7538 42 1 8.2771 -1.4006 5.5013 43 1 6.8949 -2.5111 5.6843 44 1 8.0713 0.1080 7.0299 45 1 8.8563 0.5745 5.5021 46 1 9.8934 5.4955 8.5715 47 1 4.6341 0.1399 4.0982 48 1 4.5210 -1.5073 4.7699 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070452496.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:35 Heat of formation + Delta-G solvation = -54.687909 kcal Electronic energy + Delta-G solvation = -27326.002243 eV Core-core repulsion = 23507.588316 eV Total energy + Delta-G solvation = -3818.413928 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.69936 -39.75152 -37.91729 -36.86205 -34.69386 -32.42361 -32.35461 -30.91958 -29.67370 -28.58483 -27.64712 -25.57594 -25.15490 -24.70618 -22.80152 -21.18691 -20.66237 -19.38518 -18.98166 -17.69403 -17.32833 -16.76638 -16.11090 -15.91416 -15.30804 -15.04610 -14.78905 -14.77386 -14.44313 -14.29800 -13.95371 -13.86947 -13.72235 -13.43122 -13.25450 -13.01616 -12.84888 -12.75766 -12.52989 -12.22206 -12.07239 -11.92708 -11.77396 -11.47012 -11.28575 -11.22377 -11.05808 -10.99253 -10.82974 -10.72948 -10.52050 -10.16587 -9.78503 -9.65796 -9.47547 -9.27437 -9.05534 -8.45670 -8.18645 -6.47466 -6.19487 -3.89897 2.30141 2.68712 3.06356 3.10508 3.22762 3.28147 3.32558 3.45228 3.63797 4.21706 4.28949 4.33841 4.42516 4.44715 4.59197 4.68807 4.78786 4.81452 4.86815 5.00569 5.12221 5.15488 5.24029 5.24868 5.32377 5.33627 5.39112 5.53646 5.55435 5.58676 5.67044 5.67105 5.69956 5.76072 5.77973 5.84942 5.89527 5.97843 5.99847 6.01108 6.12870 6.19778 6.40172 6.66196 7.27528 7.57469 7.61826 8.08041 8.37299 8.60344 9.25609 10.87995 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.002270 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.354399 B =12332.757717 C =13477.473078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.092 4.092 3 C -0.106 4.106 4 C -0.148 4.148 5 C -0.190 4.190 6 H 0.121 0.879 7 C 0.539 3.461 8 O -0.520 6.520 9 N -0.724 5.724 10 C 0.132 3.868 11 H 0.093 0.907 12 C -0.124 4.124 13 C -0.132 4.132 14 C 0.105 3.895 15 N -0.619 5.619 16 C 0.534 3.466 17 O -0.511 6.511 18 C -0.149 4.149 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.106 3.894 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.399 0.601 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.268 0.732 47 H 0.098 0.902 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.714 -20.980 -16.306 29.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.092 4.092 3 C -0.163 4.163 4 C -0.185 4.185 5 C -0.211 4.211 6 H 0.139 0.861 7 C 0.326 3.674 8 O -0.395 6.395 9 N -0.376 5.376 10 C 0.027 3.973 11 H 0.111 0.889 12 C -0.162 4.162 13 C -0.171 4.171 14 C -0.018 4.018 15 N -0.356 5.356 16 C 0.322 3.678 17 O -0.384 6.384 18 C -0.300 4.300 19 S 0.166 5.834 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.018 4.018 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.233 0.767 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.111 0.889 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.116 0.884 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.545 -18.552 -16.450 28.746 hybrid contribution 1.836 -1.847 0.813 2.729 sum -12.709 -20.400 -15.637 28.674 Atomic orbital electron populations 1.21405 0.91484 1.02175 1.02335 1.21605 0.94716 0.91964 1.00952 1.21385 0.99593 0.92279 1.03022 1.23213 1.03062 1.01579 0.90667 1.22359 0.97733 1.05294 0.95706 0.86077 1.19745 0.84645 0.84846 0.78197 1.90793 1.67843 1.20355 1.60522 1.45942 1.24795 1.13343 1.53489 1.21323 0.84607 0.97738 0.93667 0.88889 1.21787 0.96365 0.96583 1.01499 1.21898 0.96788 1.01809 0.96614 1.21761 0.94451 0.88805 0.96797 1.48037 1.19752 1.10785 1.57002 1.20369 0.88059 0.81263 0.78121 1.90715 1.50622 1.39823 1.57262 1.23547 0.96406 1.07867 1.02139 1.85469 1.25956 1.01681 1.70341 1.22897 1.04493 0.99761 1.41079 0.90898 1.25001 0.98315 0.94558 0.95789 1.70029 1.37482 1.00755 1.41958 0.86117 0.82150 0.78247 0.78965 1.19627 1.20580 1.20584 1.21822 0.86307 1.02820 0.90889 0.91874 0.91526 0.92377 0.91671 0.93183 0.91079 0.88281 0.87925 0.76687 0.91179 0.91050 0.90871 0.90029 0.88895 0.91402 0.89266 0.89245 0.92243 0.88406 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 9.85 37.16 0.37 -0.39 16 2 C -0.09 -0.79 2.70 -154.51 -0.42 -1.20 16 3 C -0.11 -1.16 8.09 37.16 0.30 -0.86 16 4 C -0.15 -1.04 9.52 -26.73 -0.25 -1.30 16 5 C -0.19 -1.53 5.91 -91.77 -0.54 -2.07 16 6 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 7 C 0.54 6.00 7.56 -10.99 -0.08 5.92 16 8 O -0.52 -8.13 12.77 5.55 0.07 -8.06 16 9 N -0.72 -6.29 5.08 -53.69 -0.27 -6.56 16 10 C 0.13 1.40 2.60 -67.81 -0.18 1.23 16 11 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 12 C -0.12 -0.92 5.35 -26.69 -0.14 -1.06 16 13 C -0.13 -1.09 6.08 -26.61 -0.16 -1.25 16 14 C 0.11 1.11 6.34 -3.71 -0.02 1.09 16 15 N -0.62 -9.15 2.97 -172.76 -0.51 -9.66 16 16 C 0.53 10.69 7.72 -10.98 -0.08 10.61 16 17 O -0.51 -12.47 15.28 5.55 0.08 -12.39 16 18 C -0.15 -3.10 4.50 36.01 0.16 -2.94 16 19 S -0.06 -1.70 20.57 -107.50 -2.21 -3.92 16 20 C -0.53 -15.37 9.50 30.94 0.29 -15.08 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.51 13.22 55.49 0.73 -25.77 16 24 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 C 0.11 1.42 6.01 -3.71 -0.02 1.40 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.41 7.92 -51.93 -0.41 0.00 16 31 H 0.06 0.29 7.90 -51.93 -0.41 -0.12 16 32 H 0.06 0.80 7.02 -51.93 -0.36 0.44 16 33 H 0.05 0.47 7.92 -51.93 -0.41 0.05 16 34 H 0.07 0.95 7.26 -51.93 -0.38 0.57 16 35 H 0.10 0.78 8.05 -51.93 -0.42 0.37 16 36 H 0.10 0.51 8.05 -51.93 -0.42 0.09 16 37 H 0.40 2.13 8.60 -40.82 -0.35 1.78 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.09 1.01 5.93 -51.93 -0.31 0.71 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 1.70 7.94 -51.92 -0.41 1.29 16 45 H 0.09 1.71 7.69 -51.91 -0.40 1.32 16 46 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.10 1.70 7.01 -51.93 -0.36 1.34 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 398.12 15.07 6.00 6.00 Total: -1.00 -37.00 398.12 -9.98 -46.98 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.96 Total: 0.74 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -0.88 Total: -3.92 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: -0.05 Total: -42.00 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: 0.16 Total: -20.45 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.00 -9.98 -46.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070452496.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.705 kcal (2) G-P(sol) polarization free energy of solvation -37.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds