Wall clock time and date at job start Sat Apr 11 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 115.56138 * 2 1 4 4 C 1.52999 * 117.49888 * 214.31388 * 2 1 3 5 5 C 1.52995 * 60.00100 * 252.50883 * 4 2 1 6 6 H 1.08997 * 117.49803 * 252.48550 * 5 4 2 7 7 C 1.50702 * 117.50052 * 107.48842 * 5 4 2 8 8 O 1.21276 * 119.99991 * 291.39799 * 7 5 4 9 9 N 1.34773 * 120.00038 * 111.38930 * 7 5 4 10 10 C 1.46500 * 120.00002 * 180.02562 * 9 7 5 11 11 H 1.08990 * 109.52561 * 325.08082 * 10 9 7 12 12 C 1.53046 * 109.49772 * 204.99946 * 10 9 7 13 13 C 1.53031 * 109.53726 * 178.68292 * 12 10 9 14 14 C 1.53196 * 109.31477 * 61.36734 * 13 12 10 15 15 N 1.46927 * 108.77413 * 305.36304 * 14 13 12 16 16 C 1.34770 * 120.63304 * 233.58546 * 15 14 13 17 17 O 1.21283 * 120.00270 * 180.02562 * 16 15 14 18 18 C 1.50708 * 119.99673 * 0.02562 * 16 15 14 19 19 S 1.81004 * 109.46764 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99800 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00265 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00305 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99740 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00511 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46717 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46845 * 119.99774 * 24 22 20 27 27 H 1.48494 * 109.47330 * 240.00134 * 24 22 20 28 28 C 1.46923 * 118.73554 * 53.60901 * 15 14 13 29 29 H 1.09001 * 109.46692 * 274.30780 * 1 2 3 30 30 H 1.09000 * 109.47276 * 34.30566 * 1 2 3 31 31 H 1.08999 * 109.47142 * 154.30897 * 1 2 3 32 32 H 1.09002 * 109.46941 * 205.68748 * 3 2 1 33 33 H 1.08991 * 109.47286 * 325.69343 * 3 2 1 34 34 H 1.09001 * 109.46830 * 85.69743 * 3 2 1 35 35 H 1.09004 * 117.50175 * 145.01827 * 4 2 1 36 36 H 1.09000 * 117.52012 * 359.97438 * 4 2 1 37 37 H 0.97003 * 120.00196 * 0.02562 * 9 7 5 38 38 H 1.08995 * 109.46071 * 298.70580 * 12 10 9 39 39 H 1.09006 * 109.45640 * 58.66284 * 12 10 9 40 40 H 1.09004 * 109.49984 * 181.32240 * 13 12 10 41 41 H 1.08998 * 109.50266 * 301.38136 * 13 12 10 42 42 H 1.08993 * 109.58448 * 65.15176 * 14 13 12 43 43 H 1.08999 * 109.58828 * 185.43347 * 14 13 12 44 44 H 1.08996 * 109.47108 * 299.99497 * 18 16 15 45 45 H 1.08998 * 109.47155 * 60.00384 * 18 16 15 46 46 H 0.97000 * 120.00482 * 179.97438 * 23 22 20 47 47 H 1.09009 * 109.58590 * 186.60449 * 28 15 14 48 48 H 1.08995 * 109.59117 * 66.17682 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2364 -1.1209 -0.7650 5 6 2.2365 -1.1210 0.7649 6 1 3.1717 -0.8756 1.2681 7 6 1.3721 -2.1407 1.4607 8 8 0.1639 -2.0535 1.4009 9 7 1.9416 -3.1495 2.1494 10 6 1.1013 -4.1410 2.8254 11 1 0.2021 -3.6573 3.2066 12 6 1.8790 -4.7624 3.9879 13 6 0.9908 -5.7745 4.7149 14 6 0.5972 -6.8925 3.7442 15 7 -0.0221 -6.2904 2.5556 16 6 -1.2375 -6.6939 2.1357 17 8 -1.7378 -6.1894 1.1528 18 6 -1.9748 -7.7720 2.8875 19 16 -3.5653 -8.0882 2.0834 20 6 -4.1953 -9.3517 3.1376 21 1 -3.6126 -9.6915 3.9810 22 6 -5.4399 -9.9110 2.8836 23 7 -6.1499 -9.4971 1.8553 24 14 -6.1081 -11.2500 4.0016 25 1 -5.1248 -11.5323 5.0781 26 1 -7.3868 -10.7975 4.6061 27 1 -6.3441 -12.4839 3.2100 28 6 0.7090 -5.2405 1.8333 29 1 -0.3633 0.0772 1.0248 30 1 -0.3634 0.8489 -0.5792 31 1 -0.3633 -0.9261 -0.4455 32 1 3.1824 1.3084 -0.4455 33 1 1.5812 2.0743 -0.5792 34 1 2.2774 1.7412 1.0248 35 1 3.1715 -0.8751 -1.2684 36 1 1.6115 -1.8588 -1.2681 37 1 2.9079 -3.2191 2.1975 38 1 2.7652 -5.2672 3.6033 39 1 2.1806 -3.9787 4.6830 40 1 1.5373 -6.1994 5.5569 41 1 0.0928 -5.2753 5.0788 42 1 1.4860 -7.4506 3.4501 43 1 -0.1122 -7.5637 4.2282 44 1 -1.3802 -8.6855 2.8890 45 1 -2.1453 -7.4475 3.9140 46 1 -7.0196 -9.8882 1.6774 47 1 0.0714 -4.8202 1.0555 48 1 1.6069 -5.6639 1.3833 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070452497.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:38 Heat of formation + Delta-G solvation = -54.761587 kcal Electronic energy + Delta-G solvation = -27346.799703 eV Core-core repulsion = 23528.382580 eV Total energy + Delta-G solvation = -3818.417123 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.69784 -39.75011 -37.91416 -36.86176 -34.69422 -32.42434 -32.35636 -30.91803 -29.68022 -28.58645 -27.65199 -25.57699 -25.17006 -24.66465 -22.82336 -21.19165 -20.62689 -19.39261 -18.98678 -17.69640 -17.33731 -16.77307 -16.11097 -15.83644 -15.28081 -15.18663 -14.78964 -14.71691 -14.46833 -14.26139 -13.90866 -13.85441 -13.81168 -13.39972 -13.26739 -13.05266 -12.81503 -12.75982 -12.51538 -12.23876 -12.07882 -11.92453 -11.75378 -11.47412 -11.28845 -11.22096 -11.05918 -10.99350 -10.82791 -10.73026 -10.50806 -10.14898 -9.79170 -9.69812 -9.43929 -9.28075 -9.05646 -8.46004 -8.18814 -6.47591 -6.19595 -3.90024 2.31344 2.66795 3.06551 3.10968 3.22702 3.28345 3.32680 3.46310 3.63331 4.21593 4.29750 4.34799 4.41928 4.48365 4.58256 4.67733 4.80845 4.82011 4.83995 5.00264 5.11973 5.15372 5.23911 5.24981 5.32693 5.35477 5.38868 5.53684 5.55696 5.61970 5.65560 5.67006 5.69844 5.76332 5.78171 5.85760 5.89393 5.97000 5.98895 6.01334 6.12750 6.19689 6.40323 6.65910 7.27621 7.57192 7.61691 8.08187 8.37159 8.59981 9.25497 10.87866 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018186 B = 0.002275 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.255575 B =12304.570839 C =13418.708523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.093 4.093 3 C -0.116 4.116 4 C -0.147 4.147 5 C -0.190 4.190 6 H 0.120 0.880 7 C 0.539 3.461 8 O -0.520 6.520 9 N -0.724 5.724 10 C 0.132 3.868 11 H 0.093 0.907 12 C -0.124 4.124 13 C -0.132 4.132 14 C 0.105 3.895 15 N -0.619 5.619 16 C 0.534 3.466 17 O -0.511 6.511 18 C -0.149 4.149 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.106 3.894 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.399 0.601 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.268 0.732 47 H 0.097 0.903 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.805 16.222 2.566 29.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.094 4.094 3 C -0.173 4.173 4 C -0.184 4.184 5 C -0.211 4.211 6 H 0.138 0.862 7 C 0.326 3.674 8 O -0.395 6.395 9 N -0.376 5.376 10 C 0.026 3.974 11 H 0.112 0.888 12 C -0.162 4.162 13 C -0.171 4.171 14 C -0.018 4.018 15 N -0.356 5.356 16 C 0.322 3.678 17 O -0.385 6.385 18 C -0.300 4.300 19 S 0.166 5.834 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.018 4.018 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.233 0.767 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.115 0.885 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.976 17.014 0.951 28.606 hybrid contribution 0.874 -1.619 2.039 2.746 sum 23.851 15.395 2.989 28.545 Atomic orbital electron populations 1.21383 0.90384 1.01766 1.02734 1.21604 0.96178 0.90437 1.01139 1.21399 0.99896 0.93878 1.02148 1.23237 1.02879 1.01735 0.90585 1.22350 1.01853 1.01042 0.95892 0.86160 1.19748 0.88324 0.81073 0.78288 1.90790 1.14396 1.74451 1.59889 1.45940 1.10061 1.27471 1.54095 1.21323 0.94950 0.88758 0.92328 0.88847 1.21790 0.98644 0.98978 0.96832 1.21897 1.00432 0.96642 0.98142 1.21751 0.98861 0.95401 0.85799 1.48029 1.18658 1.39331 1.29539 1.20367 0.79855 0.82980 0.84594 1.90713 1.65783 1.55806 1.26151 1.23548 1.04154 0.98902 1.03365 1.85465 1.09534 1.49763 1.38678 1.22896 1.06173 1.23755 1.15409 0.90898 1.25002 0.95763 0.97168 0.95731 1.70033 1.12223 1.41169 1.26802 0.86115 0.78797 0.80604 0.79959 1.19625 1.20576 1.20587 1.21820 0.96838 0.87840 0.95315 0.91372 0.93192 0.91404 0.92353 0.91535 0.92037 0.87874 0.88044 0.76689 0.91182 0.91051 0.90034 0.90865 0.91415 0.88893 0.89266 0.89239 0.92244 0.88454 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 8.09 37.16 0.30 -0.86 16 2 C -0.09 -0.80 2.70 -154.51 -0.42 -1.21 16 3 C -0.12 -0.72 9.85 37.16 0.37 -0.36 16 4 C -0.15 -1.13 9.52 -26.73 -0.25 -1.38 16 5 C -0.19 -1.53 5.91 -91.77 -0.54 -2.08 16 6 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 7 C 0.54 6.00 7.56 -10.99 -0.08 5.91 16 8 O -0.52 -8.13 12.77 5.56 0.07 -8.06 16 9 N -0.72 -6.29 5.08 -53.69 -0.27 -6.56 16 10 C 0.13 1.40 2.61 -67.81 -0.18 1.22 16 11 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 12 C -0.12 -0.92 5.35 -26.69 -0.14 -1.06 16 13 C -0.13 -1.09 6.08 -26.61 -0.16 -1.25 16 14 C 0.11 1.11 6.34 -3.71 -0.02 1.09 16 15 N -0.62 -9.13 2.97 -172.77 -0.51 -9.64 16 16 C 0.53 10.68 7.72 -10.98 -0.08 10.59 16 17 O -0.51 -12.45 15.28 5.55 0.08 -12.36 16 18 C -0.15 -3.10 4.50 36.01 0.16 -2.94 16 19 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 20 C -0.53 -15.37 9.50 30.94 0.29 -15.07 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.50 13.22 55.49 0.73 -25.76 16 24 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 C 0.11 1.42 6.01 -3.71 -0.02 1.40 16 29 H 0.07 0.85 7.26 -51.93 -0.38 0.48 16 30 H 0.05 0.46 7.92 -51.93 -0.41 0.05 16 31 H 0.07 0.89 7.01 -51.93 -0.36 0.52 16 32 H 0.06 0.29 7.90 -51.93 -0.41 -0.12 16 33 H 0.07 0.39 7.92 -51.93 -0.41 -0.02 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 0.57 8.05 -51.93 -0.42 0.15 16 36 H 0.10 0.93 8.05 -51.93 -0.42 0.51 16 37 H 0.40 2.14 8.60 -40.82 -0.35 1.79 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 1.01 5.95 -51.93 -0.31 0.70 16 44 H 0.09 1.70 7.94 -51.92 -0.41 1.28 16 45 H 0.09 1.71 7.70 -51.92 -0.40 1.32 16 46 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.10 1.68 7.01 -51.92 -0.36 1.32 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 398.13 15.07 6.00 6.00 Total: -1.00 -36.95 398.13 -9.98 -46.93 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -7.97 Total: 0.81 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -0.88 Total: -4.00 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.05 Total: -41.97 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: 0.16 Total: -20.43 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.95 -9.98 -46.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070452497.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.828 kcal (2) G-P(sol) polarization free energy of solvation -36.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds