Wall clock time and date at job start Sat Apr 11 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 112.85302 * 2 1 4 4 O 1.21278 * 120.00531 * 228.80558 * 3 2 1 5 5 N 1.34778 * 119.99814 * 48.80491 * 3 2 1 6 6 C 1.46502 * 120.00056 * 180.02562 * 5 3 2 7 7 H 1.09002 * 109.49564 * 324.99841 * 6 5 3 8 8 C 1.53039 * 109.49895 * 204.93416 * 6 5 3 9 9 C 1.53106 * 109.50508 * 178.68614 * 8 6 5 10 10 C 1.53185 * 109.33343 * 61.34143 * 9 8 6 11 11 N 1.46927 * 108.77460 * 305.36941 * 10 9 8 12 12 C 1.34783 * 120.63120 * 233.58596 * 11 10 9 13 13 O 1.21275 * 120.00357 * 180.02562 * 12 11 10 14 14 C 1.50707 * 119.99799 * 0.02562 * 12 11 10 15 15 S 1.80997 * 109.47131 * 180.02562 * 14 12 11 16 16 C 1.76203 * 99.99848 * 180.02562 * 15 14 12 17 17 H 1.07995 * 119.99739 * 359.97438 * 16 15 14 18 18 C 1.38798 * 119.99588 * 180.02562 * 16 15 14 19 19 N 1.31624 * 120.00472 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99748 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47212 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47614 * 119.99789 * 20 18 16 23 23 H 1.48501 * 109.47198 * 240.00146 * 20 18 16 24 24 C 1.46919 * 118.74315 * 53.60638 * 11 10 9 25 25 C 1.53780 * 113.68806 * 131.27192 * 2 1 3 26 26 C 1.53777 * 87.08259 * 89.12748 * 25 2 1 27 27 C 1.53774 * 87.08201 * 25.42983 * 26 25 2 28 28 H 1.09005 * 109.47266 * 69.66400 * 1 2 3 29 29 H 1.08997 * 109.47408 * 189.66688 * 1 2 3 30 30 H 1.09007 * 109.47107 * 309.66635 * 1 2 3 31 31 H 0.97005 * 119.99996 * 359.97438 * 5 3 2 32 32 H 1.09006 * 109.46255 * 298.67075 * 8 6 5 33 33 H 1.08997 * 109.45914 * 58.62679 * 8 6 5 34 34 H 1.09008 * 109.48567 * 301.38299 * 9 8 6 35 35 H 1.09000 * 109.48993 * 181.30340 * 9 8 6 36 36 H 1.08996 * 109.59131 * 185.58096 * 10 9 8 37 37 H 1.09001 * 109.70543 * 65.21903 * 10 9 8 38 38 H 1.08999 * 109.46786 * 300.00316 * 14 12 11 39 39 H 1.09008 * 109.46619 * 59.99968 * 14 12 11 40 40 H 0.97001 * 120.00719 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.59116 * 186.60805 * 24 11 10 42 42 H 1.09006 * 109.70559 * 66.25082 * 24 11 10 43 43 H 1.09004 * 113.60811 * 203.67481 * 25 2 1 44 44 H 1.09000 * 113.61973 * 334.57243 * 25 2 1 45 45 H 1.09000 * 113.61165 * 270.87770 * 26 25 2 46 46 H 1.08997 * 113.61641 * 139.98130 * 26 25 2 47 47 H 1.08998 * 113.61584 * 220.01973 * 27 26 25 48 48 H 1.09000 * 113.61815 * 89.11920 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9882 1.6789 -0.7903 5 7 1.6685 2.3082 0.8783 6 6 2.2370 3.6584 0.8780 7 1 3.2978 3.6064 0.6325 8 6 2.0634 4.2861 2.2629 9 6 2.6866 5.6846 2.2721 10 6 1.9676 6.5670 1.2470 11 7 2.0046 5.8986 -0.0610 12 6 2.4802 6.5401 -1.1468 13 8 2.5051 5.9777 -2.2209 14 6 2.9812 7.9563 -1.0259 15 16 3.5490 8.5355 -2.6440 16 6 4.0651 10.1664 -2.2214 17 1 3.9732 10.5150 -1.2033 18 6 4.5886 11.0033 -3.1970 19 7 4.7001 10.5786 -4.4379 20 14 5.1351 12.7325 -2.7492 21 1 4.9059 12.9644 -1.3003 22 1 6.5800 12.8896 -3.0536 23 1 4.3531 13.7185 -3.5375 24 6 1.5128 4.5179 -0.1630 25 6 2.1478 -0.9289 1.0584 26 6 2.0949 -2.0420 -0.0013 27 6 2.1459 -0.9281 -1.0602 28 1 -0.3634 0.3572 -0.9636 29 1 -0.3634 -1.0130 0.1726 30 1 -0.3634 0.6560 0.7911 31 1 0.9700 2.0762 1.5102 32 1 1.0014 4.3605 2.4974 33 1 2.5568 3.6628 3.0085 34 1 3.7432 5.6135 2.0135 35 1 2.5833 6.1222 3.2650 36 1 2.4703 7.5317 1.1786 37 1 0.9317 6.7155 1.5521 38 1 2.1741 8.5983 -0.6733 39 1 3.8084 7.9898 -0.3168 40 1 5.0663 11.1633 -5.1197 41 1 1.7156 4.1306 -1.1615 42 1 0.4397 4.4950 0.0269 43 1 3.1609 -0.6488 1.3472 44 1 1.4973 -1.1095 1.9142 45 1 1.1594 -2.6013 -0.0007 46 1 2.9743 -2.6860 -0.0024 47 1 1.4939 -1.1079 -1.9149 48 1 3.1584 -0.6477 -1.3507 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070454486.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:40 Heat of formation + Delta-G solvation = -60.652879 kcal Electronic energy + Delta-G solvation = -27526.889488 eV Core-core repulsion = 23708.216900 eV Total energy + Delta-G solvation = -3818.672588 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.99350 -39.87801 -38.19879 -37.03693 -34.74115 -32.42669 -32.36624 -31.03740 -29.80980 -28.52240 -26.03716 -25.57417 -25.33748 -25.01044 -23.21975 -21.35870 -20.98048 -19.20399 -18.75873 -17.71761 -17.46229 -16.75739 -16.28166 -15.90835 -15.50062 -15.26212 -15.06887 -14.78747 -14.56321 -14.46422 -13.96628 -13.85290 -13.74550 -13.26597 -13.11205 -13.05372 -12.84053 -12.75594 -12.62782 -12.48251 -11.92896 -11.77708 -11.69654 -11.47376 -11.28643 -11.22538 -11.05705 -10.99144 -10.88039 -10.83101 -10.73008 -10.64590 -9.79953 -9.75801 -9.47686 -9.27621 -9.05427 -8.45549 -8.18405 -6.47294 -6.19292 -3.89738 2.42965 2.72930 3.08002 3.12241 3.22883 3.28768 3.32997 3.63869 4.05171 4.12105 4.21912 4.32186 4.40817 4.42410 4.58956 4.61827 4.71240 4.84299 5.00768 5.04497 5.10385 5.15304 5.15674 5.21528 5.25116 5.32508 5.40568 5.42765 5.48487 5.53977 5.56168 5.62629 5.67319 5.69214 5.70109 5.78012 5.84064 5.89721 5.98149 6.01966 6.06919 6.13068 6.21761 6.66382 7.27419 7.57736 7.61932 8.06612 8.37426 8.60620 9.25764 10.88166 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021789 B = 0.002222 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.764515 B =12596.061561 C =13398.931288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.112 4.112 3 C 0.525 3.475 4 O -0.525 6.525 5 N -0.724 5.724 6 C 0.130 3.870 7 H 0.093 0.907 8 C -0.124 4.124 9 C -0.132 4.132 10 C 0.105 3.895 11 N -0.619 5.619 12 C 0.534 3.466 13 O -0.511 6.511 14 C -0.149 4.149 15 S -0.061 6.061 16 C -0.534 4.534 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.106 3.894 25 C -0.121 4.121 26 C -0.141 4.141 27 C -0.115 4.115 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.399 0.601 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.097 0.903 42 H 0.062 0.938 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.339 -21.946 19.027 30.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.115 4.115 3 C 0.311 3.689 4 O -0.400 6.400 5 N -0.376 5.376 6 C 0.025 3.975 7 H 0.111 0.889 8 C -0.162 4.162 9 C -0.171 4.171 10 C -0.018 4.018 11 N -0.356 5.356 12 C 0.322 3.678 13 O -0.384 6.384 14 C -0.300 4.300 15 S 0.165 5.835 16 C -0.682 4.682 17 H 0.091 0.909 18 C -0.137 4.137 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.018 4.018 25 C -0.158 4.158 26 C -0.178 4.178 27 C -0.153 4.153 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.233 0.767 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.599 -22.515 16.637 29.594 hybrid contribution -0.071 1.754 1.945 2.621 sum -9.669 -20.760 18.582 29.492 Atomic orbital electron populations 1.21595 0.91259 1.02781 1.02780 1.22178 0.97079 0.91429 1.00787 1.20476 0.82285 0.86108 0.80014 1.90772 1.30757 1.80209 1.38238 1.45999 1.42017 1.11492 1.38121 1.21339 0.99685 0.80988 0.95528 0.88907 1.21799 1.01753 0.96864 0.95800 1.21906 1.00901 0.94624 0.99663 1.21754 1.00881 0.96687 0.82484 1.48031 1.64963 1.13635 1.08935 1.20372 0.76327 0.87938 0.83185 1.90713 1.53456 1.67534 1.26713 1.23548 1.03608 0.94708 1.08086 1.85470 1.80352 1.14707 1.02925 1.22895 1.48414 0.98943 0.97974 0.90897 1.24998 0.95157 0.99034 0.94470 1.70029 1.42638 1.36521 1.01037 0.86117 0.78369 0.82438 0.78558 1.19626 1.20573 1.20591 1.21810 0.97069 0.81521 1.01426 1.22913 1.01324 0.95324 0.96262 1.22829 1.02419 0.96344 0.96246 1.22894 1.02508 0.93860 0.96046 0.91472 0.91219 0.92054 0.76699 0.91200 0.91048 0.90869 0.90035 0.88911 0.91401 0.89266 0.89238 0.92242 0.88462 0.91957 0.89720 0.90679 0.89886 0.90982 0.90853 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.72 8.98 37.16 0.33 -0.38 16 2 C -0.11 -0.88 1.26 -154.85 -0.19 -1.08 16 3 C 0.53 5.97 6.89 -10.99 -0.08 5.90 16 4 O -0.53 -8.72 15.56 5.56 0.09 -8.63 16 5 N -0.72 -6.40 4.97 -53.69 -0.27 -6.67 16 6 C 0.13 1.40 2.60 -67.81 -0.18 1.23 16 7 H 0.09 1.31 7.58 -51.93 -0.39 0.91 16 8 C -0.12 -0.92 5.36 -26.66 -0.14 -1.06 16 9 C -0.13 -1.10 6.08 -26.58 -0.16 -1.26 16 10 C 0.11 1.11 6.34 -3.71 -0.02 1.09 16 11 N -0.62 -9.20 2.97 -172.77 -0.51 -9.71 16 12 C 0.53 10.74 7.72 -10.98 -0.08 10.66 16 13 O -0.51 -12.54 15.27 5.56 0.08 -12.46 16 14 C -0.15 -3.11 4.50 36.01 0.16 -2.95 16 15 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 16 C -0.53 -15.39 9.50 30.94 0.29 -15.10 16 17 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.54 13.22 55.49 0.73 -25.81 16 20 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.11 1.44 6.01 -3.71 -0.02 1.41 16 25 C -0.12 -0.75 7.20 -25.92 -0.19 -0.94 16 26 C -0.14 -0.85 7.73 -25.92 -0.20 -1.05 16 27 C -0.12 -0.99 7.00 -25.92 -0.18 -1.17 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.30 7.34 -51.93 -0.38 -0.08 16 30 H 0.06 0.26 7.04 -51.92 -0.37 -0.11 16 31 H 0.40 2.22 7.51 -40.82 -0.31 1.91 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.09 1.70 7.94 -51.92 -0.41 1.29 16 39 H 0.09 1.72 7.69 -51.91 -0.40 1.32 16 40 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.10 1.71 7.01 -51.93 -0.36 1.35 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 44 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 45 H 0.08 0.39 7.64 -51.93 -0.40 0.00 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 48 H 0.10 1.03 7.43 -51.93 -0.39 0.65 16 LS Contribution 394.77 15.07 5.95 5.95 Total: -1.00 -37.55 394.77 -9.82 -47.37 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -7.90 Total: -0.01 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -0.76 Total: -2.70 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: -0.05 Total: -42.19 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: 0.17 Total: -21.09 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.55 -9.82 -47.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070454486.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.280 kcal (2) G-P(sol) polarization free energy of solvation -37.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds