Wall clock time and date at job start Sat Apr 11 2020 06:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 115.54452 * 2 1 4 4 C 1.50697 * 109.46944 * 294.32352 * 3 2 1 5 5 O 1.21283 * 120.00280 * 358.37394 * 4 3 2 6 6 N 1.34777 * 120.00252 * 178.64686 * 4 3 2 7 7 C 1.46500 * 120.00149 * 179.72565 * 6 4 3 8 8 H 1.08995 * 109.49929 * 325.06292 * 7 6 4 9 9 C 1.53043 * 109.49378 * 204.99770 * 7 6 4 10 10 C 1.53048 * 109.53345 * 178.68340 * 9 7 6 11 11 C 1.53189 * 109.31194 * 61.37073 * 10 9 7 12 12 N 1.46927 * 108.77438 * 305.35899 * 11 10 9 13 13 C 1.34783 * 120.63611 * 233.59008 * 12 11 10 14 14 O 1.21270 * 120.00062 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.99515 * 359.97438 * 13 12 11 16 16 S 1.80995 * 109.46975 * 179.97438 * 15 13 12 17 17 C 1.76195 * 100.00002 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00401 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00092 * 179.97438 * 17 16 15 20 20 N 1.31623 * 119.99788 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00088 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46646 * 89.99955 * 21 19 17 23 23 H 1.48494 * 109.47256 * 209.99948 * 21 19 17 24 24 H 1.48501 * 109.47125 * 330.00228 * 21 19 17 25 25 C 1.46929 * 118.73874 * 53.61189 * 12 11 10 26 26 C 1.52996 * 117.49760 * 145.65799 * 2 1 3 27 27 C 1.52992 * 117.50652 * 214.32342 * 2 1 3 28 28 H 1.09001 * 109.46796 * 63.45939 * 1 2 3 29 29 H 1.09000 * 109.46753 * 183.44934 * 1 2 3 30 30 H 1.08994 * 109.47807 * 303.45144 * 1 2 3 31 31 H 1.09006 * 109.46741 * 174.32664 * 3 2 1 32 32 H 1.09001 * 109.47455 * 54.32730 * 3 2 1 33 33 H 0.97007 * 119.99792 * 359.72634 * 6 4 3 34 34 H 1.08997 * 109.46153 * 298.70024 * 9 7 6 35 35 H 1.08992 * 109.46367 * 58.67823 * 9 7 6 36 36 H 1.09000 * 109.49429 * 181.31391 * 10 9 7 37 37 H 1.08991 * 109.49634 * 301.38220 * 10 9 7 38 38 H 1.09001 * 109.59202 * 65.14576 * 11 10 9 39 39 H 1.08997 * 109.58978 * 185.57753 * 11 10 9 40 40 H 1.09001 * 109.46798 * 300.00070 * 15 13 12 41 41 H 1.09002 * 109.46933 * 59.99983 * 15 13 12 42 42 H 0.97003 * 120.00273 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.58996 * 186.60199 * 25 12 11 44 44 H 1.09007 * 109.58482 * 66.17596 * 25 12 11 45 45 H 1.08998 * 117.50228 * 215.00433 * 26 2 1 46 46 H 1.09000 * 117.50334 * 0.03653 * 26 2 1 47 47 H 1.09005 * 117.49491 * 359.97438 * 27 2 1 48 48 H 1.08991 * 117.50495 * 144.99820 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3805 0.0000 4 6 1.8784 2.0860 -1.2947 5 8 1.2207 1.5273 -2.1469 6 7 2.3354 3.3359 -1.5079 7 6 2.0377 4.0194 -2.7690 8 1 2.0274 3.2940 -3.5824 9 6 3.1092 5.0775 -3.0417 10 6 2.8173 5.7697 -4.3751 11 6 1.4566 6.4690 -4.2957 12 7 0.4425 5.4856 -3.8916 13 6 -0.6738 5.3088 -4.6260 14 8 -1.5036 4.4943 -4.2815 15 6 -0.8912 6.1243 -5.8745 16 16 -2.4677 5.6588 -6.6322 17 6 -2.4650 6.7333 -8.0287 18 1 -1.6366 7.4071 -8.1901 19 6 -3.5272 6.7129 -8.9220 20 7 -4.5366 5.8913 -8.7256 21 14 -3.5248 7.8525 -10.4021 22 1 -2.8705 7.1728 -11.5490 23 1 -4.9231 8.1977 -10.7634 24 1 -2.7785 9.0929 -10.0706 25 6 0.6681 4.6988 -2.6714 26 6 2.2364 -1.1206 0.7656 27 6 2.2366 -1.1207 -0.7652 28 1 -0.3633 0.4592 -0.9194 29 1 -0.3633 -1.0258 0.0618 30 1 -0.3634 0.5664 0.8573 31 1 3.2692 1.2672 0.1016 32 1 1.8058 1.9668 0.8348 33 1 2.8614 3.7828 -0.8264 34 1 3.1026 5.8161 -2.2401 35 1 4.0879 4.6000 -3.0874 36 1 3.5937 6.5069 -4.5799 37 1 2.7998 5.0282 -5.1737 38 1 1.5007 7.2718 -3.5598 39 1 1.1990 6.8792 -5.2721 40 1 -0.9097 7.1836 -5.6180 41 1 -0.0804 5.9349 -6.5780 42 1 -5.2791 5.8773 -9.3497 43 1 -0.1097 3.9412 -2.5761 44 1 0.6479 5.3574 -1.8030 45 1 3.1713 -0.8744 1.2691 46 1 1.6112 -1.8581 1.2688 47 1 1.6114 -1.8584 -1.2683 48 1 3.1714 -0.8747 -1.2686 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070454767.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:43 Heat of formation + Delta-G solvation = -56.635684 kcal Electronic energy + Delta-G solvation = -27291.109017 eV Core-core repulsion = 23472.610627 eV Total energy + Delta-G solvation = -3818.498390 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.54143 -39.60427 -38.00564 -37.03509 -34.67764 -32.42779 -32.36932 -31.13030 -29.78082 -28.69488 -27.85054 -25.57322 -25.08498 -23.36920 -22.66050 -21.31653 -20.88085 -19.28948 -18.97956 -17.69875 -17.18847 -16.76227 -16.25140 -15.98375 -15.54028 -15.34503 -14.95375 -14.78652 -14.67876 -14.21671 -14.16590 -13.88009 -13.71056 -13.28774 -13.19076 -12.90614 -12.86828 -12.54518 -12.37226 -12.29554 -11.91917 -11.74864 -11.71056 -11.50837 -11.29359 -11.20713 -11.04781 -10.99943 -10.82439 -10.73337 -10.57049 -10.17688 -9.79297 -9.65580 -9.48321 -9.27346 -9.04663 -8.45590 -8.19037 -6.47431 -6.19236 -3.89732 2.48664 2.69307 3.06289 3.10851 3.23625 3.28033 3.31836 3.56685 3.66230 4.22003 4.32572 4.38409 4.47773 4.55941 4.60125 4.68482 4.71825 4.83564 4.92677 5.00364 5.12107 5.14764 5.15658 5.24863 5.26510 5.32942 5.37766 5.53719 5.55952 5.64765 5.67090 5.69905 5.69948 5.76038 5.77312 5.86041 5.89528 5.91972 5.97969 6.02096 6.12849 6.18301 6.27045 6.66326 7.27440 7.57431 7.61556 8.09208 8.37123 8.60342 9.25686 10.88165 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017088 B = 0.002280 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.203920 B =12278.652938 C =13465.673646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.109 4.109 3 C -0.103 4.103 4 C 0.510 3.490 5 O -0.516 6.516 6 N -0.730 5.730 7 C 0.132 3.868 8 H 0.093 0.907 9 C -0.124 4.124 10 C -0.132 4.132 11 C 0.105 3.895 12 N -0.619 5.619 13 C 0.534 3.466 14 O -0.511 6.511 15 C -0.149 4.149 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.106 3.894 26 C -0.178 4.178 27 C -0.163 4.163 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.398 0.602 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.097 0.903 44 H 0.062 0.938 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.302 -4.472 20.067 29.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.109 4.109 3 C -0.143 4.143 4 C 0.296 3.704 5 O -0.390 6.390 6 N -0.383 5.383 7 C 0.026 3.974 8 H 0.111 0.889 9 C -0.162 4.162 10 C -0.171 4.171 11 C -0.018 4.018 12 N -0.356 5.356 13 C 0.322 3.678 14 O -0.384 6.384 15 C -0.300 4.300 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.018 4.018 26 C -0.215 4.215 27 C -0.200 4.200 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.232 0.768 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.116 0.884 44 H 0.080 0.920 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 19.372 -6.178 19.877 28.435 hybrid contribution 1.386 1.990 -0.980 2.616 sum 20.758 -4.188 18.897 28.382 Atomic orbital electron populations 1.21372 0.91417 1.01860 1.02918 1.21037 0.95354 0.89136 1.05384 1.21200 1.01801 0.95328 0.95942 1.20693 0.79359 0.81180 0.89196 1.90775 1.37344 1.65341 1.45556 1.46025 1.56601 1.16154 1.19517 1.21310 0.94477 0.94510 0.87084 0.88886 1.21789 0.98291 0.97681 0.98475 1.21898 0.97294 1.00566 0.97372 1.21756 0.87346 0.90847 1.01851 1.48038 1.20975 1.40381 1.26196 1.20363 0.80363 0.82913 0.84159 1.90710 1.42853 1.34839 1.70019 1.23548 1.07257 1.02114 0.97061 1.85460 1.16390 1.53426 1.28123 1.22856 1.09181 1.25367 1.10907 0.90955 1.24997 0.94595 0.95996 0.98040 1.70019 1.08173 1.35547 1.36485 0.86171 0.77550 0.80276 0.81510 1.20278 1.20766 1.19707 1.21825 0.97581 0.95709 0.86719 1.23140 1.02169 1.01265 0.94927 1.22950 1.02198 1.01263 0.93580 0.90393 0.92655 0.92695 0.88983 0.88515 0.76776 0.91202 0.91089 0.90061 0.90879 0.91409 0.88912 0.89270 0.89252 0.92189 0.88425 0.91994 0.88982 0.88688 0.88655 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.45 37.16 0.35 -0.85 16 2 C -0.11 -0.96 1.60 -154.51 -0.25 -1.21 16 3 C -0.10 -0.74 5.59 -27.88 -0.16 -0.89 16 4 C 0.51 5.34 7.66 -10.99 -0.08 5.25 16 5 O -0.52 -7.97 14.13 5.56 0.08 -7.90 16 6 N -0.73 -5.94 5.08 -53.69 -0.27 -6.21 16 7 C 0.13 1.37 2.61 -67.81 -0.18 1.19 16 8 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 9 C -0.12 -0.89 5.35 -26.68 -0.14 -1.04 16 10 C -0.13 -1.08 6.08 -26.61 -0.16 -1.24 16 11 C 0.11 1.10 6.34 -3.71 -0.02 1.08 16 12 N -0.62 -9.08 2.97 -172.76 -0.51 -9.59 16 13 C 0.53 10.65 7.72 -10.98 -0.08 10.56 16 14 O -0.51 -12.42 15.27 5.57 0.09 -12.33 16 15 C -0.15 -3.10 4.50 36.01 0.16 -2.94 16 16 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 17 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.49 13.22 55.49 0.73 -25.76 16 21 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C 0.11 1.40 6.01 -3.71 -0.02 1.38 16 26 C -0.18 -1.26 9.92 -26.69 -0.26 -1.52 16 27 C -0.16 -1.46 9.92 -26.70 -0.26 -1.73 16 28 H 0.08 1.03 6.61 -51.93 -0.34 0.68 16 29 H 0.05 0.52 8.10 -51.93 -0.42 0.10 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.40 1.83 8.60 -40.82 -0.35 1.48 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.01 5.93 -51.93 -0.31 0.70 16 40 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16 41 H 0.09 1.71 7.69 -51.91 -0.40 1.31 16 42 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.10 1.67 7.00 -51.93 -0.36 1.31 16 44 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 401.23 15.07 6.05 6.05 Total: -1.00 -37.30 401.23 -10.03 -47.32 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -8.03 Total: 0.81 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -0.92 Total: -5.03 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: -0.05 Total: -41.56 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: 0.16 Total: -20.23 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.30 -10.03 -47.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070454767.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.311 kcal (2) G-P(sol) polarization free energy of solvation -37.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds