Wall clock time and date at job start Sat Apr 11 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 115.55094 * 2 1 4 4 C 1.52998 * 117.49473 * 214.32661 * 2 1 3 5 5 C 1.52999 * 117.49564 * 145.66900 * 2 1 3 6 6 H 1.08997 * 117.50050 * 359.97438 * 5 2 1 7 7 C 1.50695 * 117.49974 * 215.00272 * 5 2 1 8 8 O 1.21283 * 119.99813 * 359.97438 * 7 5 2 9 9 N 1.34774 * 120.00890 * 180.02562 * 7 5 2 10 10 C 1.46934 * 120.62515 * 359.71846 * 9 7 5 11 11 C 1.52761 * 109.01021 * 233.58687 * 10 9 7 12 12 C 1.53038 * 109.37819 * 305.58506 * 11 10 9 13 13 C 1.53043 * 109.53741 * 61.24144 * 12 11 10 14 14 H 1.08999 * 109.52039 * 58.60208 * 13 12 11 15 15 N 1.46502 * 109.49479 * 178.67707 * 13 12 11 16 16 C 1.34778 * 120.00502 * 274.83772 * 15 13 12 17 17 O 1.21278 * 119.99425 * 0.02562 * 16 15 13 18 18 C 1.50699 * 120.00198 * 180.02562 * 16 15 13 19 19 S 1.81003 * 109.47124 * 180.02562 * 18 16 15 20 20 C 1.76195 * 99.99817 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00209 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99808 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99911 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99988 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47134 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47081 * 120.00230 * 24 22 20 27 27 H 1.48505 * 109.46967 * 240.00063 * 24 22 20 28 28 C 1.46919 * 120.63794 * 179.97438 * 9 7 5 29 29 H 1.09001 * 109.47002 * 34.41649 * 1 2 3 30 30 H 1.08993 * 109.46955 * 154.42086 * 1 2 3 31 31 H 1.09000 * 109.47050 * 274.41915 * 1 2 3 32 32 H 1.08997 * 109.46759 * 85.58170 * 3 2 1 33 33 H 1.08993 * 109.46954 * 205.58320 * 3 2 1 34 34 H 1.08995 * 109.47058 * 325.58161 * 3 2 1 35 35 H 1.08992 * 117.50074 * 0.02562 * 4 2 1 36 36 H 1.09001 * 117.49625 * 145.02619 * 4 2 1 37 37 H 1.09002 * 109.58385 * 353.42085 * 10 9 7 38 38 H 1.08997 * 109.58647 * 113.83941 * 10 9 7 39 39 H 1.09002 * 109.56401 * 185.55268 * 11 10 9 40 40 H 1.08993 * 109.38790 * 65.51245 * 11 10 9 41 41 H 1.08997 * 109.46160 * 301.21889 * 12 11 10 42 42 H 1.08999 * 109.45791 * 181.26220 * 12 11 10 43 43 H 0.97002 * 119.99542 * 94.84099 * 15 13 12 44 44 H 1.08998 * 109.47303 * 300.00167 * 18 16 15 45 45 H 1.09004 * 109.46692 * 60.00211 * 18 16 15 46 46 H 0.97005 * 119.99937 * 180.02562 * 23 22 20 47 47 H 1.08994 * 109.58796 * 246.15624 * 28 9 7 48 48 H 1.08995 * 109.58805 * 6.44299 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 2.2364 -1.1208 -0.7653 5 6 2.2364 -1.1207 0.7654 6 1 1.6112 -1.8578 1.2693 7 6 3.5289 -0.7806 1.4616 8 8 3.9715 0.3470 1.4015 9 7 4.1937 -1.7295 2.1501 10 6 3.6676 -3.0987 2.2362 11 6 3.5753 -3.5049 3.7059 12 6 4.9392 -3.3122 4.3726 13 6 5.3398 -1.8368 4.3016 14 1 4.5824 -1.2295 4.7973 15 7 6.6308 -1.6481 4.9679 16 6 6.6799 -1.4601 6.3016 17 8 5.6552 -1.4477 6.9502 18 6 8.0079 -1.2654 6.9868 19 16 7.7430 -1.0407 8.7632 20 6 9.4099 -0.8404 9.2980 21 1 10.2157 -0.8785 8.5800 22 6 9.6872 -0.6335 10.6422 23 7 8.7051 -0.5875 11.5174 24 14 11.4544 -0.4218 11.2094 25 1 12.3644 -0.5156 10.0396 26 1 11.6116 0.9067 11.8541 27 1 11.7922 -1.4888 12.1855 28 6 5.4552 -1.4132 2.8336 29 1 -0.3633 0.8478 -0.5808 30 1 -0.3633 -0.9269 -0.4437 31 1 -0.3633 0.0792 1.0246 32 1 2.2752 1.7423 1.0246 33 1 3.1829 1.3084 -0.4437 34 1 1.5819 2.0738 -0.5808 35 1 1.6112 -1.8578 -1.2691 36 1 3.1715 -0.8749 -1.2685 37 1 2.6763 -3.1383 1.7846 38 1 4.3373 -3.7810 1.7127 39 1 3.2800 -4.5517 3.7774 40 1 2.8340 -2.8827 4.2073 41 1 5.6848 -3.9162 3.8555 42 1 4.8806 -3.6227 5.4158 43 1 7.4503 -1.6583 4.4490 44 1 8.6342 -2.1420 6.8212 45 1 8.5016 -0.3836 6.5782 46 1 8.8989 -0.4426 12.4568 47 1 6.2734 -1.9556 2.3598 48 1 5.6443 -0.3415 2.7740 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070621890.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:48 Heat of formation + Delta-G solvation = -54.095930 kcal Electronic energy + Delta-G solvation = -27088.709820 eV Core-core repulsion = 23270.321562 eV Total energy + Delta-G solvation = -3818.388258 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.94201 -39.55003 -38.21356 -36.91933 -34.57561 -32.57403 -32.42968 -30.93109 -29.79518 -28.41086 -27.74672 -26.15507 -25.49395 -24.09374 -23.05171 -21.21469 -20.40223 -19.90625 -18.71837 -17.88321 -17.70622 -16.46958 -16.31960 -15.88291 -15.28676 -15.07378 -14.80669 -14.76827 -14.52596 -14.42494 -14.09263 -14.01413 -13.88297 -13.54376 -13.17871 -13.15572 -12.96476 -12.83652 -12.52702 -12.34452 -12.18023 -12.04038 -11.69573 -11.57265 -11.35467 -11.13440 -11.08306 -11.04974 -11.01704 -10.75847 -10.59711 -10.16332 -9.81716 -9.75855 -9.42019 -9.11995 -9.06747 -8.81455 -8.23657 -6.50264 -6.22066 -3.92509 2.17856 2.48557 3.05847 3.08333 3.21520 3.28353 3.32404 3.36823 3.71937 4.03103 4.20060 4.22543 4.33998 4.47196 4.55665 4.61824 4.66542 4.72761 4.74188 4.95775 5.09019 5.13253 5.16582 5.19092 5.25788 5.28576 5.32623 5.41325 5.45644 5.49905 5.59261 5.61182 5.67632 5.68861 5.73759 5.75735 5.88203 5.88565 6.01055 6.09185 6.10450 6.14191 6.25254 6.61393 7.05859 7.59718 7.67036 7.90634 8.35241 8.58860 9.23462 10.85403 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025317 B = 0.001916 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.702979 B =14607.766649 C =14960.227050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C -0.104 4.104 4 C -0.146 4.146 5 C -0.190 4.190 6 H 0.124 0.876 7 C 0.546 3.454 8 O -0.531 6.531 9 N -0.606 5.606 10 C 0.106 3.894 11 C -0.134 4.134 12 C -0.132 4.132 13 C 0.135 3.865 14 H 0.091 0.909 15 N -0.734 5.734 16 C 0.535 3.465 17 O -0.515 6.515 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.107 3.893 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.398 0.602 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.268 0.732 47 H 0.071 0.929 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.599 -5.813 -27.332 31.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.161 4.161 4 C -0.183 4.183 5 C -0.211 4.211 6 H 0.142 0.858 7 C 0.335 3.665 8 O -0.408 6.408 9 N -0.339 5.339 10 C -0.017 4.017 11 C -0.173 4.173 12 C -0.171 4.171 13 C 0.029 3.971 14 H 0.109 0.891 15 N -0.388 5.388 16 C 0.321 3.679 17 O -0.389 6.389 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.016 4.016 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.232 0.768 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.078 0.922 47 H 0.090 0.910 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.122 -5.150 -26.081 30.585 hybrid contribution 2.778 -0.210 -0.418 2.817 sum -12.344 -5.360 -26.499 29.720 Atomic orbital electron populations 1.21408 0.91407 1.02243 1.02370 1.21617 0.94778 0.91911 1.01056 1.21365 0.99574 0.92395 1.02777 1.23224 1.03021 1.01546 0.90526 1.22396 0.97723 1.05240 0.95756 0.85779 1.19699 0.84445 0.84175 0.78199 1.90718 1.68368 1.20395 1.61298 1.47945 1.23734 1.10611 1.51653 1.21773 1.00089 0.82377 0.97450 1.21839 0.98221 1.02331 0.94881 1.21949 0.96531 0.96245 1.02346 1.21158 0.87260 0.96728 0.91946 0.89074 1.45951 1.08576 1.76176 1.08100 1.20316 0.91348 0.75010 0.81213 1.90702 1.35700 1.48330 1.64140 1.23535 0.96630 1.04822 1.05408 1.85401 1.11682 1.94207 0.92083 1.22910 0.92360 1.57220 0.95818 0.90857 1.25001 0.98440 0.94634 0.95571 1.70031 1.31366 1.46280 1.02604 0.86110 0.82695 0.77974 0.78674 1.19614 1.20557 1.20574 1.21759 0.85580 1.03306 0.90972 0.91538 0.92283 0.91853 0.91285 0.91722 0.93200 0.87814 0.88286 0.89364 0.91061 0.90105 0.91060 0.91564 0.90440 0.76791 0.89179 0.89148 0.92238 0.91031 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 9.85 37.16 0.37 -0.30 16 2 C -0.09 -0.71 2.70 -154.50 -0.42 -1.12 16 3 C -0.10 -0.97 8.09 37.16 0.30 -0.67 16 4 C -0.15 -0.92 9.53 -26.69 -0.25 -1.17 16 5 C -0.19 -1.45 4.85 -91.74 -0.45 -1.90 16 6 H 0.12 0.73 6.56 -51.93 -0.34 0.39 16 7 C 0.55 5.81 7.46 -10.99 -0.08 5.73 16 8 O -0.53 -7.39 12.52 5.56 0.07 -7.32 16 9 N -0.61 -5.59 2.98 -173.01 -0.52 -6.11 16 10 C 0.11 0.68 6.32 -3.93 -0.02 0.66 16 11 C -0.13 -1.03 6.07 -26.83 -0.16 -1.19 16 12 C -0.13 -1.35 5.46 -26.69 -0.15 -1.50 16 13 C 0.14 1.61 2.61 -67.79 -0.18 1.43 16 14 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 15 N -0.73 -9.65 5.08 -53.67 -0.27 -9.92 16 16 C 0.53 9.88 7.81 -10.99 -0.09 9.80 16 17 O -0.52 -11.60 15.52 5.56 0.09 -11.51 16 18 C -0.15 -3.08 6.16 36.01 0.22 -2.85 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.53 -15.28 9.50 30.94 0.29 -14.98 16 21 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 24 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 C 0.11 1.07 5.91 -3.70 -0.02 1.05 16 29 H 0.07 0.35 7.93 -51.93 -0.41 -0.07 16 30 H 0.06 0.26 7.90 -51.93 -0.41 -0.15 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.78 7.26 -51.93 -0.38 0.41 16 33 H 0.06 0.68 7.01 -51.93 -0.36 0.32 16 34 H 0.05 0.39 7.93 -51.93 -0.41 -0.03 16 35 H 0.10 0.45 8.05 -51.93 -0.42 0.03 16 36 H 0.10 0.69 8.05 -51.93 -0.42 0.27 16 37 H 0.09 0.42 5.51 -51.93 -0.29 0.13 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.40 4.02 8.60 -40.82 -0.35 3.67 16 44 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 45 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 46 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.10 1.18 7.00 -51.93 -0.36 0.82 16 LS Contribution 397.34 15.07 5.99 5.99 Total: -1.00 -35.78 397.34 -9.77 -45.55 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -7.89 Total: 1.27 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -0.73 Total: -5.04 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: -0.05 Total: -41.55 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.16 Total: -18.83 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.78 -9.77 -45.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070621890.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.544 kcal (2) G-P(sol) polarization free energy of solvation -35.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds