Wall clock time and date at job start Sat Apr 11 2020 06:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 115.55094 * 2 1 4 4 C 1.52998 * 117.49473 * 214.32661 * 2 1 3 5 5 C 1.52999 * 117.49564 * 145.66900 * 2 1 3 6 6 H 1.08997 * 117.50050 * 359.97438 * 5 2 1 7 7 C 1.50695 * 117.49974 * 215.00272 * 5 2 1 8 8 O 1.21283 * 119.99813 * 359.97438 * 7 5 2 9 9 N 1.34774 * 120.00890 * 180.02562 * 7 5 2 10 10 C 1.46934 * 120.62515 * 359.71846 * 9 7 5 11 11 C 1.52761 * 109.01021 * 233.58687 * 10 9 7 12 12 C 1.53038 * 109.37819 * 305.58506 * 11 10 9 13 13 C 1.53043 * 109.53741 * 61.24144 * 12 11 10 14 14 H 1.08999 * 109.52039 * 58.60208 * 13 12 11 15 15 N 1.46502 * 109.49479 * 178.67707 * 13 12 11 16 16 C 1.34778 * 120.00502 * 274.83772 * 15 13 12 17 17 O 1.21278 * 119.99425 * 0.02562 * 16 15 13 18 18 C 1.50699 * 120.00198 * 180.02562 * 16 15 13 19 19 S 1.81003 * 109.47124 * 180.02562 * 18 16 15 20 20 C 1.76195 * 99.99817 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00209 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99808 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99911 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99988 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47134 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47081 * 120.00230 * 24 22 20 27 27 H 1.48505 * 109.46967 * 240.00063 * 24 22 20 28 28 C 1.46919 * 120.63794 * 179.97438 * 9 7 5 29 29 H 1.09001 * 109.47002 * 34.41649 * 1 2 3 30 30 H 1.08993 * 109.46955 * 154.42086 * 1 2 3 31 31 H 1.09000 * 109.47050 * 274.41915 * 1 2 3 32 32 H 1.08997 * 109.46759 * 85.58170 * 3 2 1 33 33 H 1.08993 * 109.46954 * 205.58320 * 3 2 1 34 34 H 1.08995 * 109.47058 * 325.58161 * 3 2 1 35 35 H 1.08992 * 117.50074 * 0.02562 * 4 2 1 36 36 H 1.09001 * 117.49625 * 145.02619 * 4 2 1 37 37 H 1.09002 * 109.58385 * 353.42085 * 10 9 7 38 38 H 1.08997 * 109.58647 * 113.83941 * 10 9 7 39 39 H 1.09002 * 109.56401 * 185.55268 * 11 10 9 40 40 H 1.08993 * 109.38790 * 65.51245 * 11 10 9 41 41 H 1.08997 * 109.46160 * 301.21889 * 12 11 10 42 42 H 1.08999 * 109.45791 * 181.26220 * 12 11 10 43 43 H 0.97002 * 119.99542 * 94.84099 * 15 13 12 44 44 H 1.08998 * 109.47303 * 300.00167 * 18 16 15 45 45 H 1.09004 * 109.46692 * 60.00211 * 18 16 15 46 46 H 0.97005 * 119.99937 * 180.02562 * 23 22 20 47 47 H 1.08994 * 109.58796 * 246.15624 * 28 9 7 48 48 H 1.08995 * 109.58805 * 6.44299 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 2.2364 -1.1208 -0.7653 5 6 2.2364 -1.1207 0.7654 6 1 1.6112 -1.8578 1.2693 7 6 3.5289 -0.7806 1.4616 8 8 3.9715 0.3470 1.4015 9 7 4.1937 -1.7295 2.1501 10 6 3.6676 -3.0987 2.2362 11 6 3.5753 -3.5049 3.7059 12 6 4.9392 -3.3122 4.3726 13 6 5.3398 -1.8368 4.3016 14 1 4.5824 -1.2295 4.7973 15 7 6.6308 -1.6481 4.9679 16 6 6.6799 -1.4601 6.3016 17 8 5.6552 -1.4477 6.9502 18 6 8.0079 -1.2654 6.9868 19 16 7.7430 -1.0407 8.7632 20 6 9.4099 -0.8404 9.2980 21 1 10.2157 -0.8785 8.5800 22 6 9.6872 -0.6335 10.6422 23 7 8.7051 -0.5875 11.5174 24 14 11.4544 -0.4218 11.2094 25 1 12.3644 -0.5156 10.0396 26 1 11.6116 0.9067 11.8541 27 1 11.7922 -1.4888 12.1855 28 6 5.4552 -1.4132 2.8336 29 1 -0.3633 0.8478 -0.5808 30 1 -0.3633 -0.9269 -0.4437 31 1 -0.3633 0.0792 1.0246 32 1 2.2752 1.7423 1.0246 33 1 3.1829 1.3084 -0.4437 34 1 1.5819 2.0738 -0.5808 35 1 1.6112 -1.8578 -1.2691 36 1 3.1715 -0.8749 -1.2685 37 1 2.6763 -3.1383 1.7846 38 1 4.3373 -3.7810 1.7127 39 1 3.2800 -4.5517 3.7774 40 1 2.8340 -2.8827 4.2073 41 1 5.6848 -3.9162 3.8555 42 1 4.8806 -3.6227 5.4158 43 1 7.4503 -1.6583 4.4490 44 1 8.6342 -2.1420 6.8212 45 1 8.5016 -0.3836 6.5782 46 1 8.8989 -0.4426 12.4568 47 1 6.2734 -1.9556 2.3598 48 1 5.6443 -0.3415 2.7740 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070621890.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:47 Heat of formation + Delta-G solvation = -78.048445 kcal Electronic energy + Delta-G solvation = -27089.748479 eV Core-core repulsion = 23270.321562 eV Total energy + Delta-G solvation = -3819.426917 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.73472 -40.77501 -39.11249 -37.73598 -35.73390 -34.59979 -33.44041 -32.04039 -30.57539 -29.62634 -28.34217 -27.67914 -26.88924 -24.84433 -23.81392 -22.14901 -21.64482 -20.62082 -19.84837 -19.39886 -18.45303 -17.93933 -17.42115 -16.89661 -16.74845 -16.48087 -16.17197 -15.83409 -15.49682 -15.36145 -15.06339 -14.89878 -14.77048 -14.57416 -14.46597 -14.20131 -13.89566 -13.66926 -13.59995 -13.44999 -13.17746 -12.93614 -12.92055 -12.70729 -12.61586 -12.50401 -12.18178 -12.10443 -11.99320 -11.87263 -11.72399 -11.17454 -11.17318 -11.03307 -10.76585 -10.47572 -10.29425 -10.23810 -9.69368 -8.68758 -8.36402 -6.14625 1.22454 1.39919 1.40400 1.46822 1.55884 1.56748 1.80331 2.25392 2.35940 2.77884 2.97844 3.29654 3.39514 3.60829 3.67092 3.76351 3.84746 3.91416 3.92959 4.03970 4.10003 4.19968 4.20202 4.28104 4.47729 4.48351 4.55169 4.62989 4.67846 4.78607 4.81507 4.85046 4.86704 4.96931 5.03063 5.07174 5.10588 5.11681 5.16019 5.21519 5.31473 5.36274 5.40724 5.50210 5.54346 6.18572 6.33024 6.45184 7.04991 7.13014 7.20016 8.73102 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025317 B = 0.001916 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.702979 B =14607.766649 C =14960.227050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.109 4.109 3 C -0.100 4.100 4 C -0.124 4.124 5 C -0.194 4.194 6 H 0.149 0.851 7 C 0.535 3.465 8 O -0.575 6.575 9 N -0.605 5.605 10 C 0.106 3.894 11 C -0.129 4.129 12 C -0.127 4.127 13 C 0.138 3.862 14 H 0.052 0.948 15 N -0.708 5.708 16 C 0.537 3.463 17 O -0.563 6.563 18 C -0.129 4.129 19 S -0.152 6.152 20 C -0.545 4.545 21 H 0.083 0.917 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.256 1.256 26 H -0.275 1.275 27 H -0.273 1.273 28 C 0.115 3.885 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.135 0.865 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.044 0.956 43 H 0.418 0.582 44 H 0.113 0.887 45 H 0.108 0.892 46 H 0.271 0.729 47 H 0.102 0.898 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.963 -7.882 -30.267 33.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.110 4.110 3 C -0.157 4.157 4 C -0.162 4.162 5 C -0.214 4.214 6 H 0.166 0.834 7 C 0.326 3.674 8 O -0.455 6.455 9 N -0.338 5.338 10 C -0.015 4.015 11 C -0.168 4.168 12 C -0.166 4.166 13 C 0.032 3.968 14 H 0.071 0.929 15 N -0.363 5.363 16 C 0.323 3.677 17 O -0.441 6.441 18 C -0.280 4.280 19 S 0.075 5.925 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.822 3.178 25 H -0.180 1.180 26 H -0.200 1.200 27 H -0.198 1.198 28 C -0.009 4.009 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.153 0.847 36 H 0.108 0.892 37 H 0.131 0.869 38 H 0.114 0.886 39 H 0.125 0.875 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.063 0.937 43 H 0.255 0.745 44 H 0.132 0.868 45 H 0.127 0.873 46 H 0.080 0.920 47 H 0.120 0.880 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.479 -7.256 -29.079 33.285 hybrid contribution 2.540 0.448 0.398 2.609 sum -11.939 -6.808 -28.681 31.804 Atomic orbital electron populations 1.21398 0.89727 1.03518 1.02326 1.21708 0.95982 0.90983 1.02294 1.21252 0.99172 0.94364 1.00875 1.23303 1.02652 1.00863 0.89336 1.22458 0.96363 1.05900 0.96725 0.83402 1.20344 0.85261 0.83702 0.78129 1.90706 1.69587 1.22243 1.62977 1.48087 1.23239 1.11714 1.50758 1.22020 1.02032 0.80853 0.96629 1.21834 0.95909 1.03603 0.95409 1.21906 0.99000 0.94618 1.01092 1.21218 0.85299 0.97715 0.92590 0.92944 1.45672 1.10300 1.73951 1.06335 1.20072 0.90000 0.74975 0.82660 1.90692 1.36901 1.50923 1.65609 1.23370 0.98097 1.06630 0.99908 1.85593 1.13193 1.94649 0.99086 1.23240 0.92355 1.57195 0.96528 0.89844 1.26153 1.03595 0.93920 0.95616 1.70195 1.34152 1.47377 1.03081 0.84886 0.76395 0.78042 0.78498 1.17984 1.20009 1.19822 1.21612 0.87271 1.02314 0.89693 0.91259 0.90183 0.92421 0.94214 0.93499 0.91968 0.84719 0.89243 0.86929 0.88557 0.87546 0.92906 0.89135 0.93678 0.74502 0.86841 0.87339 0.91989 0.88036 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.85 71.98 0.71 -0.33 16 2 C -0.11 -1.51 2.70 -52.18 -0.14 -1.65 16 3 C -0.10 -1.93 8.09 71.98 0.58 -1.34 16 4 C -0.12 -1.21 9.53 30.62 0.29 -0.92 16 5 C -0.19 -2.56 4.85 -11.52 -0.06 -2.61 16 6 H 0.15 1.21 6.56 -2.39 -0.02 1.19 16 7 C 0.54 11.08 7.46 87.66 0.65 11.73 16 8 O -0.58 -16.71 12.52 -3.04 -0.04 -16.75 16 9 N -0.61 -10.23 2.98 -819.68 -2.44 -12.67 16 10 C 0.11 1.00 6.32 86.22 0.54 1.54 16 11 C -0.13 -1.70 6.07 30.53 0.19 -1.52 16 12 C -0.13 -2.46 5.46 30.62 0.17 -2.29 16 13 C 0.14 3.26 2.61 45.08 0.12 3.38 16 14 H 0.05 1.68 7.58 -2.39 -0.02 1.66 16 15 N -0.71 -18.19 5.08 -442.10 -2.25 -20.44 16 16 C 0.54 20.14 7.81 87.66 0.69 20.82 16 17 O -0.56 -26.66 15.52 -3.02 -0.05 -26.70 16 18 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 19 S -0.15 -8.56 20.57 -56.49 -1.16 -9.73 16 20 C -0.55 -31.40 9.50 67.95 0.65 -30.76 16 21 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 22 C 0.01 0.68 5.49 84.86 0.47 1.14 16 23 N -0.91 -56.50 13.22 21.65 0.29 -56.21 16 24 Si 1.00 43.95 29.55 68.60 2.03 45.98 16 25 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 28 C 0.11 2.18 5.91 86.38 0.51 2.69 16 29 H 0.07 0.60 7.93 -2.39 -0.02 0.58 16 30 H 0.08 0.41 7.90 -2.39 -0.02 0.39 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.04 0.98 7.26 -2.39 -0.02 0.96 16 33 H 0.05 1.04 7.01 -2.39 -0.02 1.03 16 34 H 0.06 0.98 7.93 -2.39 -0.02 0.96 16 35 H 0.13 0.52 8.05 -2.39 -0.02 0.50 16 36 H 0.09 1.08 8.05 -2.39 -0.02 1.06 16 37 H 0.11 0.57 5.51 -2.39 -0.01 0.55 16 38 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.42 7.55 8.60 -92.71 -0.80 6.75 16 44 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 45 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 46 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 47 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.08 1.84 7.00 -2.39 -0.02 1.82 16 Total: -1.00 -84.16 397.34 2.34 -81.82 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.16 Total: 19.51 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 5.80 Total: -4.82 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -4.40 Total: -89.32 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -0.08 Total: -43.45 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.73 kcal Total: -84.16 2.34 -81.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070621890.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.769 kcal (2) G-P(sol) polarization free energy of solvation -84.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds