Wall clock time and date at job start Sat Apr 11 2020 06:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 115.55245 * 2 1 4 4 C 1.50706 * 109.47094 * 279.59922 * 3 2 1 5 5 O 1.21279 * 119.99917 * 5.38075 * 4 3 2 6 6 N 1.34777 * 119.99563 * 185.37641 * 4 3 2 7 7 C 1.46925 * 120.63591 * 0.02562 * 6 4 3 8 8 C 1.53192 * 108.77492 * 233.58775 * 7 6 4 9 9 C 1.53035 * 109.31334 * 305.36034 * 8 7 6 10 10 C 1.53040 * 109.53732 * 61.36828 * 9 8 7 11 11 H 1.09003 * 109.49951 * 58.62147 * 10 9 8 12 12 N 1.46507 * 109.50226 * 178.68150 * 10 9 8 13 13 C 1.34778 * 120.00000 * 275.00289 * 12 10 9 14 14 O 1.21280 * 119.99761 * 359.97438 * 13 12 10 15 15 C 1.50692 * 119.99776 * 179.97438 * 13 12 10 16 16 S 1.81003 * 109.46878 * 180.02562 * 15 13 12 17 17 C 1.76204 * 99.99879 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00291 * 0.02562 * 17 16 15 19 19 C 1.38797 * 119.99977 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00160 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99982 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46761 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.46914 * 300.00078 * 21 19 17 24 24 H 1.48495 * 109.46880 * 60.00036 * 21 19 17 25 25 C 1.46927 * 120.62769 * 179.97438 * 6 4 3 26 26 C 1.53000 * 117.51676 * 145.70762 * 2 1 3 27 27 C 1.52993 * 60.00333 * 107.47760 * 26 2 1 28 28 H 1.09005 * 109.47514 * 65.01796 * 1 2 3 29 29 H 1.09000 * 109.47449 * 185.01719 * 1 2 3 30 30 H 1.09004 * 109.47032 * 305.01861 * 1 2 3 31 31 H 1.08999 * 109.47372 * 159.60251 * 3 2 1 32 32 H 1.08998 * 109.47412 * 39.59875 * 3 2 1 33 33 H 1.08996 * 109.58385 * 113.80151 * 7 6 4 34 34 H 1.08995 * 109.58422 * 353.37355 * 7 6 4 35 35 H 1.09008 * 109.49746 * 185.41633 * 8 7 6 36 36 H 1.08995 * 109.52534 * 65.33242 * 8 7 6 37 37 H 1.09004 * 109.46715 * 301.35250 * 9 8 7 38 38 H 1.09003 * 109.46215 * 181.38434 * 9 8 7 39 39 H 0.96999 * 119.99795 * 94.99400 * 12 10 9 40 40 H 1.08999 * 109.47882 * 59.99862 * 15 13 12 41 41 H 1.09003 * 109.47042 * 299.99715 * 15 13 12 42 42 H 0.96996 * 120.00497 * 179.97438 * 20 19 17 43 43 H 1.09008 * 109.58749 * 6.62396 * 25 6 4 44 44 H 1.09004 * 109.58663 * 246.20301 * 25 6 4 45 45 H 1.09007 * 117.49345 * 214.97028 * 26 2 1 46 46 H 1.09001 * 117.49807 * 359.97438 * 26 2 1 47 47 H 1.09003 * 117.49782 * 252.50965 * 27 26 2 48 48 H 1.08999 * 117.50483 * 107.48418 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.1928 1.9357 -1.4010 5 8 1.6287 1.3367 -2.2919 6 7 2.8223 3.0981 -1.6636 7 6 3.5104 3.8350 -0.5950 8 6 2.9862 5.2743 -0.5720 9 6 3.1431 5.8924 -1.9631 10 6 2.3172 5.0937 -2.9741 11 1 1.2702 5.0951 -2.6708 12 7 2.4428 5.7046 -4.2998 13 6 1.6396 6.7292 -4.6485 14 8 0.8126 7.1451 -3.8649 15 6 1.7693 7.3579 -6.0118 16 16 0.5626 8.6971 -6.1758 17 6 0.9265 9.2380 -7.8128 18 1 1.7049 8.7515 -8.3818 19 6 0.2120 10.2887 -8.3714 20 7 -0.7370 10.8814 -7.6781 21 14 0.5973 10.8617 -10.1072 22 1 -0.2992 11.9898 -10.4664 23 1 2.0108 11.3115 -10.1777 24 1 0.3868 9.7397 -11.0569 25 6 2.8343 3.6520 -3.0245 26 6 2.2368 -1.1211 0.7645 27 6 2.2364 -1.1208 -0.7654 28 1 -0.3634 0.4340 -0.9315 29 1 -0.3634 -1.0237 0.0899 30 1 -0.3633 0.5897 0.8417 31 1 3.2156 1.2927 0.3582 32 1 1.6322 2.0497 0.6550 33 1 4.5833 3.8400 -0.7869 34 1 3.3109 3.3581 0.3646 35 1 3.5560 5.8575 0.1515 36 1 1.9332 5.2740 -0.2906 37 1 4.1933 5.8703 -2.2541 38 1 2.7935 6.9246 -1.9435 39 1 3.1041 5.3717 -4.9265 40 1 1.5838 6.6054 -6.7782 41 1 2.7755 7.7592 -6.1327 42 1 -1.2361 11.6159 -8.0683 43 1 2.1887 3.0543 -3.6680 44 1 3.8523 3.6420 -3.4141 45 1 3.1721 -0.8751 1.2676 46 1 1.6118 -1.8586 1.2680 47 1 1.6111 -1.8583 -1.2686 48 1 3.1712 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071000962.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:54 Heat of formation + Delta-G solvation = -57.482511 kcal Electronic energy + Delta-G solvation = -27009.928905 eV Core-core repulsion = 23191.393795 eV Total energy + Delta-G solvation = -3818.535111 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.77537 -39.44145 -38.24897 -37.09105 -34.58532 -32.55884 -32.42827 -31.16344 -29.90297 -28.67072 -27.97942 -25.56684 -25.47234 -23.23541 -22.74052 -21.60403 -20.39977 -19.87524 -18.74808 -17.88865 -17.48167 -16.53706 -16.29264 -16.02795 -15.73308 -15.14516 -15.11462 -14.80387 -14.62840 -14.41667 -14.26492 -13.97181 -13.73665 -13.49620 -13.21710 -13.08581 -12.95536 -12.59322 -12.53867 -12.33434 -12.05834 -11.82502 -11.75440 -11.59446 -11.30827 -11.14021 -11.07364 -11.04396 -11.02585 -10.76981 -10.59640 -10.24331 -9.83674 -9.79005 -9.42152 -9.11662 -9.05275 -8.81614 -8.24479 -6.50186 -6.21469 -3.92226 2.35189 2.49657 3.05790 3.08457 3.23697 3.27868 3.31908 3.45076 3.72095 4.20542 4.22353 4.23144 4.40312 4.47609 4.59098 4.59714 4.64119 4.66637 4.76748 4.94872 5.05300 5.08733 5.13599 5.15335 5.19150 5.27744 5.31565 5.39931 5.45428 5.53021 5.59584 5.61095 5.64717 5.66130 5.74352 5.75769 5.83580 5.88274 6.00098 6.02070 6.09045 6.10731 6.14233 6.61426 7.06189 7.59295 7.66994 7.91713 8.35066 8.58756 9.23691 10.85894 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024793 B = 0.001897 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.075454 B =14758.036457 C =15149.193210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.112 4.112 3 C -0.103 4.103 4 C 0.516 3.484 5 O -0.527 6.527 6 N -0.613 5.613 7 C 0.105 3.895 8 C -0.133 4.133 9 C -0.132 4.132 10 C 0.135 3.865 11 H 0.091 0.909 12 N -0.734 5.734 13 C 0.535 3.465 14 O -0.515 6.515 15 C -0.154 4.154 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.283 1.283 23 H -0.274 1.274 24 H -0.274 1.274 25 C 0.107 3.893 26 C -0.178 4.178 27 C -0.157 4.157 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.398 0.602 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.269 0.731 43 H 0.099 0.901 44 H 0.071 0.929 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.976 -21.242 18.777 30.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.113 4.113 3 C -0.142 4.142 4 C 0.304 3.696 5 O -0.402 6.402 6 N -0.347 5.347 7 C -0.018 4.018 8 C -0.172 4.172 9 C -0.171 4.171 10 C 0.029 3.971 11 H 0.109 0.891 12 N -0.388 5.388 13 C 0.321 3.679 14 O -0.389 6.389 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.208 1.208 23 H -0.200 1.200 24 H -0.199 1.199 25 C -0.016 4.016 26 C -0.215 4.215 27 C -0.194 4.194 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.232 0.768 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.117 0.883 44 H 0.089 0.911 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.121 -20.734 19.607 30.279 hybrid contribution 1.671 -0.078 -2.306 2.849 sum 11.792 -20.813 17.301 29.522 Atomic orbital electron populations 1.21310 0.91571 1.01803 1.02418 1.21061 0.95168 0.89281 1.05761 1.21252 1.02370 0.96140 0.94482 1.20672 0.77708 0.80072 0.91111 1.90713 1.43373 1.58562 1.47538 1.48043 1.54603 1.22598 1.09496 1.21840 0.96757 0.92647 0.90535 1.21898 1.02574 0.94949 0.97735 1.21951 1.00316 1.00852 0.93980 1.21165 1.01401 0.91051 0.83479 0.89090 1.45954 1.40130 1.36466 1.16263 1.20312 0.79844 0.78842 0.88879 1.90701 1.34705 1.60966 1.52517 1.23535 1.06791 1.04469 0.95626 1.85393 1.43316 1.34526 1.20066 1.22829 1.23956 1.21428 1.00241 0.90966 1.24990 0.94492 0.95418 0.98664 1.70002 1.20815 1.22357 1.37118 0.86225 0.78379 0.78292 0.82609 1.20804 1.19951 1.19925 1.21751 1.02075 0.93683 0.84122 1.23180 1.02126 1.01115 0.95056 1.22878 1.02189 1.00888 0.93415 0.91303 0.92534 0.92461 0.88967 0.88199 0.91041 0.89527 0.90141 0.90995 0.91586 0.90442 0.76796 0.89154 0.89185 0.92123 0.88275 0.91118 0.88936 0.88689 0.88749 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.66 37.15 0.36 -0.57 16 2 C -0.11 -0.87 1.59 -154.51 -0.25 -1.12 16 3 C -0.10 -0.70 4.00 -27.88 -0.11 -0.81 16 4 C 0.52 5.19 7.56 -10.98 -0.08 5.10 16 5 O -0.53 -7.27 14.37 5.56 0.08 -7.19 16 6 N -0.61 -5.36 2.97 -172.73 -0.51 -5.87 16 7 C 0.10 0.61 6.30 -3.71 -0.02 0.59 16 8 C -0.13 -0.97 6.08 -26.61 -0.16 -1.13 16 9 C -0.13 -1.32 5.46 -26.69 -0.15 -1.47 16 10 C 0.14 1.58 2.61 -67.78 -0.18 1.41 16 11 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 12 N -0.73 -9.58 5.08 -53.66 -0.27 -9.86 16 13 C 0.54 9.84 7.81 -10.99 -0.09 9.76 16 14 O -0.52 -11.55 15.53 5.56 0.09 -11.46 16 15 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 16 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 17 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 18 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 21 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 C 0.11 1.05 5.91 -3.68 -0.02 1.03 16 26 C -0.18 -1.10 9.87 -26.73 -0.26 -1.36 16 27 C -0.16 -1.27 9.18 -26.73 -0.25 -1.51 16 28 H 0.07 0.71 7.61 -51.93 -0.39 0.32 16 29 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.44 7.47 -51.93 -0.39 0.05 16 32 H 0.10 0.56 7.91 -51.93 -0.41 0.14 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.33 5.95 -51.93 -0.31 0.02 16 35 H 0.08 0.46 8.14 -51.92 -0.42 0.03 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.40 3.99 8.60 -40.82 -0.35 3.64 16 40 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 41 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.10 1.17 7.01 -51.92 -0.36 0.81 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.46 8.08 -51.92 -0.42 0.04 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 401.91 15.07 6.06 6.06 Total: -1.00 -35.99 401.91 -9.92 -45.91 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -8.07 Total: 1.24 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -0.79 Total: -5.94 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: -0.05 Total: -41.21 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.17 Total: -18.65 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.99 -9.92 -45.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071000962.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.574 kcal (2) G-P(sol) polarization free energy of solvation -35.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds