Wall clock time and date at job start Sat Apr 11 2020 06:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37885 * 120.01119 * 2 1 4 4 C 1.38643 * 120.65758 * 179.97438 * 3 2 1 5 5 C 1.37889 * 120.19841 * 0.02562 * 4 3 2 6 6 C 1.39066 * 119.62667 * 359.97438 * 5 4 3 7 7 C 1.47659 * 134.26723 * 179.97438 * 6 5 4 8 8 C 1.47085 * 127.13913 * 359.97438 * 7 6 5 9 9 O 1.21653 * 119.99759 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00184 * 179.97438 * 8 7 6 11 11 C 1.47388 * 135.85252 * 359.63872 * 10 8 7 12 12 C 1.52073 * 87.41302 * 154.38153 * 11 10 8 13 13 C 1.47390 * 135.85368 * 179.97438 * 10 8 7 14 14 C 1.53515 * 117.21288 * 267.27736 * 12 11 10 15 15 C 1.54620 * 102.70324 * 262.92948 * 14 12 11 16 16 N 1.47147 * 107.37975 * 339.38509 * 15 14 12 17 17 C 1.36935 * 125.58223 * 179.11293 * 16 15 14 18 18 H 1.08001 * 119.99868 * 174.74151 * 17 16 15 19 19 C 1.38809 * 120.00194 * 354.73327 * 17 16 15 20 20 N 1.31623 * 119.99754 * 7.06365 * 19 17 16 21 21 Si 1.86804 * 120.00388 * 187.05969 * 19 17 16 22 22 H 1.48494 * 109.46997 * 94.98979 * 21 19 17 23 23 H 1.48494 * 109.47194 * 214.99117 * 21 19 17 24 24 H 1.48501 * 109.46825 * 334.98955 * 21 19 17 25 25 C 1.47753 * 108.83827 * 359.08740 * 16 15 14 26 26 C 1.36043 * 105.72562 * 180.02562 * 7 6 5 27 27 O 1.33811 * 109.85758 * 0.02562 * 26 7 6 28 28 C 1.34909 * 111.35253 * 359.72939 * 27 26 7 29 29 H 1.09005 * 109.47088 * 90.00104 * 1 2 3 30 30 H 1.08999 * 109.47707 * 329.99968 * 1 2 3 31 31 H 1.09001 * 109.47054 * 209.99823 * 1 2 3 32 32 H 1.07999 * 119.67680 * 0.02622 * 3 2 1 33 33 H 1.08000 * 119.90583 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.18635 * 179.97438 * 5 4 3 35 35 H 1.08997 * 113.54242 * 268.99271 * 11 10 8 36 36 H 1.09002 * 113.54708 * 39.66949 * 11 10 8 37 37 H 1.09002 * 113.54611 * 320.33244 * 13 10 8 38 38 H 1.08999 * 113.54019 * 90.93422 * 13 10 8 39 39 H 1.09004 * 110.76410 * 21.23231 * 14 12 11 40 40 H 1.09000 * 110.76391 * 144.62176 * 14 12 11 41 41 H 1.09001 * 109.86764 * 98.83507 * 15 14 12 42 42 H 1.09004 * 109.86704 * 219.93493 * 15 14 12 43 43 H 0.96999 * 119.99758 * 179.97438 * 20 19 17 44 44 H 1.09001 * 110.40350 * 263.50599 * 25 16 15 45 45 H 1.08997 * 110.40550 * 141.08095 * 25 16 15 46 46 H 1.08002 * 125.07904 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1940 0.0000 4 6 3.5830 1.2096 0.0005 5 6 4.2899 0.0258 0.0005 6 6 3.6045 -1.1843 0.0005 7 6 4.0166 -2.6022 0.0001 8 6 5.3903 -3.1277 -0.0011 9 8 6.3349 -2.3610 -0.0023 10 7 5.6027 -4.4587 -0.0009 11 6 4.7557 -5.6648 0.0068 12 6 5.9114 -6.3968 -0.6574 13 6 6.7831 -5.3413 -0.0022 14 6 5.9184 -6.4520 -2.1915 15 6 5.2950 -7.8362 -2.4849 16 7 5.4421 -8.6511 -1.2685 17 6 5.0012 -9.9383 -1.1137 18 1 5.2317 -10.4830 -0.2100 19 6 4.2579 -10.5429 -2.1180 20 7 4.0944 -9.9337 -3.2733 21 14 3.4897 -12.2212 -1.8302 22 1 2.0847 -12.0518 -1.3802 23 1 3.5141 -13.0001 -3.0942 24 1 4.2596 -12.9457 -0.7874 25 6 6.1440 -7.8535 -0.2418 26 6 2.8620 -3.3217 -0.0002 27 8 1.8106 -2.4940 -0.0005 28 6 2.2019 -1.2029 0.0055 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 0.8899 0.5138 31 1 -0.3633 -0.8900 0.5138 32 1 1.6515 2.1263 0.0004 33 1 4.1108 2.1518 0.0001 34 1 5.3699 0.0382 0.0005 35 1 4.5271 -6.0298 1.0081 36 1 3.8714 -5.5799 -0.6248 37 1 7.5916 -4.9863 -0.6413 38 1 7.1234 -5.6146 0.9966 39 1 5.3037 -5.6548 -2.6097 40 1 6.9371 -6.3977 -2.5755 41 1 4.2388 -7.7225 -2.7290 42 1 5.8197 -8.3105 -3.3142 43 1 3.5753 -10.3563 -3.9753 44 1 7.2094 -8.0839 -0.2443 45 1 5.7161 -8.0407 0.7430 46 1 2.8027 -4.4001 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072817189.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:05 Heat of formation + Delta-G solvation = 66.335544 kcal Electronic energy + Delta-G solvation = -29058.514778 eV Core-core repulsion = 25109.904869 eV Total energy + Delta-G solvation = -3948.609908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.78988 -40.68261 -38.33142 -38.15661 -35.72048 -33.80454 -32.36984 -31.73426 -30.20925 -29.31375 -28.60336 -27.12610 -26.19154 -25.94082 -24.09687 -23.21999 -22.54228 -21.87845 -20.35056 -19.13830 -18.52934 -17.90543 -17.22925 -16.73855 -16.53040 -16.00669 -15.90405 -15.44561 -15.43127 -14.76385 -14.55371 -14.37871 -13.89171 -13.76802 -13.65775 -13.57196 -13.11045 -12.94368 -12.62067 -12.44208 -12.35265 -12.12072 -11.99682 -11.91090 -11.88989 -11.19360 -11.07913 -10.95319 -10.73425 -10.51196 -10.27926 -10.17618 -10.14441 -9.95367 -9.78377 -9.67582 -8.85328 -8.67283 -8.63225 -8.31887 -6.90040 -5.78333 -3.11175 0.56431 1.09406 1.58638 2.42681 2.77392 3.17693 3.36222 3.41944 3.43988 3.56413 4.17650 4.21818 4.40912 4.51990 4.54121 4.61344 4.74641 4.91419 4.98899 5.09820 5.15949 5.18740 5.24227 5.32559 5.40641 5.43905 5.50477 5.52515 5.59337 5.65189 5.72856 5.75756 5.84186 5.99571 6.07998 6.09066 6.15976 6.17532 6.26464 6.38282 6.39981 6.45390 6.58952 6.63678 6.85353 7.49469 7.55317 7.73144 7.76604 8.17507 8.18877 9.15158 9.75431 10.41005 11.33521 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016854 B = 0.002613 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.947001 B =10712.597783 C =11869.644904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.072 4.072 3 C -0.099 4.099 4 C -0.129 4.129 5 C -0.067 4.067 6 C -0.087 4.087 7 C -0.223 4.223 8 C 0.615 3.385 9 O -0.542 6.542 10 N -0.640 5.640 11 C 0.109 3.891 12 C -0.103 4.103 13 C 0.123 3.877 14 C -0.118 4.118 15 C 0.178 3.822 16 N -0.604 5.604 17 C -0.230 4.230 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.919 5.919 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.153 3.847 26 C 0.067 3.933 27 O -0.181 6.181 28 C 0.045 3.955 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.049 0.951 42 H 0.042 0.958 43 H 0.253 0.747 44 H 0.028 0.972 45 H 0.044 0.956 46 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.987 19.473 7.324 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.072 4.072 3 C -0.117 4.117 4 C -0.148 4.148 5 C -0.085 4.085 6 C -0.088 4.088 7 C -0.227 4.227 8 C 0.406 3.594 9 O -0.421 6.421 10 N -0.375 5.375 11 C -0.013 4.013 12 C -0.104 4.104 13 C 0.001 3.999 14 C -0.156 4.156 15 C 0.053 3.947 16 N -0.331 5.331 17 C -0.358 4.358 18 H 0.096 0.904 19 C -0.202 4.202 20 N -0.566 5.566 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.206 1.206 25 C 0.027 3.973 26 C -0.001 4.001 27 O -0.080 6.080 28 C -0.002 4.002 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.062 0.938 46 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -3.926 19.890 7.185 21.509 hybrid contribution -0.277 -1.063 0.068 1.100 sum -4.203 18.827 7.253 20.609 Atomic orbital electron populations 1.20748 0.90241 1.03164 1.02784 1.18786 0.96229 0.88275 1.03912 1.20830 0.94203 0.96334 1.00365 1.21082 0.93919 0.97985 1.01773 1.20692 1.00873 0.89791 0.97124 1.19401 0.92324 0.92660 1.04434 1.20901 0.93770 0.92549 1.15487 1.16510 0.86901 0.79809 0.76138 1.90764 1.43674 1.56004 1.51686 1.49641 1.12209 1.03012 1.72654 1.23094 0.95987 0.81216 1.01007 1.22163 0.94898 0.95635 0.97735 1.22782 0.90269 0.85993 1.00874 1.22480 1.01189 1.00481 0.91431 1.21242 0.98901 0.85220 0.89295 1.44547 1.67431 1.11551 1.09594 1.19040 1.26798 0.87720 1.02272 0.90351 1.24816 1.00512 0.98795 0.96114 1.69973 1.44323 1.38434 1.03894 0.86135 0.79438 0.83393 0.77024 1.21615 1.21797 1.20626 1.21148 0.96025 0.86834 0.93339 1.25013 0.83476 0.96267 0.95374 1.83869 1.34772 1.14589 1.74767 1.19396 0.92378 0.83484 1.04921 0.90849 0.91039 0.91264 0.84737 0.85083 0.84525 0.88930 0.90167 0.90201 0.89539 0.92073 0.91644 0.93331 0.93933 0.93709 0.95475 0.93786 0.76349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.02 36.00 0.36 -0.51 16 2 C -0.07 -0.74 5.89 -104.50 -0.62 -1.36 16 3 C -0.10 -0.89 9.66 -39.56 -0.38 -1.27 16 4 C -0.13 -1.26 10.04 -39.56 -0.40 -1.66 16 5 C -0.07 -0.85 9.88 -39.40 -0.39 -1.24 16 6 C -0.09 -1.23 6.29 -104.98 -0.66 -1.89 16 7 C -0.22 -3.22 6.31 -103.25 -0.65 -3.87 16 8 C 0.62 9.93 8.05 -12.67 -0.10 9.83 16 9 O -0.54 -10.27 17.06 5.23 0.09 -10.18 16 10 N -0.64 -9.22 3.70 -187.14 -0.69 -9.91 16 11 C 0.11 1.45 6.43 -7.34 -0.05 1.40 16 12 C -0.10 -1.57 1.06 -155.23 -0.16 -1.73 16 13 C 0.12 1.68 8.02 -7.49 -0.06 1.62 16 14 C -0.12 -2.04 6.40 -25.61 -0.16 -2.20 16 15 C 0.18 4.02 5.40 -2.84 -0.02 4.00 16 16 N -0.60 -14.19 3.41 -170.54 -0.58 -14.77 16 17 C -0.23 -6.03 10.26 -15.06 -0.15 -6.19 16 18 H 0.08 1.98 7.84 -52.49 -0.41 1.57 16 19 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 20 N -0.92 -25.92 10.35 55.49 0.57 -25.35 16 21 Si 0.91 21.25 29.56 -169.99 -5.02 16.23 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 C 0.15 2.78 6.70 -3.22 -0.02 2.76 16 26 C 0.07 0.82 11.22 29.94 0.34 1.15 16 27 O -0.18 -2.30 10.53 5.32 0.06 -2.24 16 28 C 0.04 0.57 7.05 -38.56 -0.27 0.30 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.14 1.80 7.54 -52.49 -0.40 1.40 16 35 H 0.09 1.08 8.06 -51.93 -0.42 0.66 16 36 H 0.08 1.03 6.27 -51.93 -0.33 0.70 16 37 H 0.08 1.10 8.13 -51.93 -0.42 0.68 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 1.21 7.30 -51.93 -0.38 0.84 16 42 H 0.04 1.09 7.60 -51.93 -0.39 0.69 16 43 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.04 0.75 8.00 -51.93 -0.42 0.34 16 46 H 0.22 2.15 5.12 -52.49 -0.27 1.88 16 LS Contribution 377.19 15.07 5.68 5.68 Total: -1.00 -32.36 377.19 -9.75 -42.11 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.36 Total: -0.46 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -3.50 Total: -1.11 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.70 Total: -50.03 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.15 Total: -12.42 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.36 -9.75 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072817189.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.444 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds