Wall clock time and date at job start Sat Apr 11 2020 06:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37885 * 120.01119 * 2 1 4 4 C 1.38643 * 120.65758 * 179.97438 * 3 2 1 5 5 C 1.37889 * 120.19841 * 0.02562 * 4 3 2 6 6 C 1.39066 * 119.62667 * 359.97438 * 5 4 3 7 7 C 1.47659 * 134.26723 * 179.97438 * 6 5 4 8 8 C 1.47085 * 127.13913 * 359.97438 * 7 6 5 9 9 O 1.21653 * 119.99759 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00184 * 179.97438 * 8 7 6 11 11 C 1.47388 * 135.85252 * 359.63872 * 10 8 7 12 12 C 1.52073 * 87.41302 * 154.38153 * 11 10 8 13 13 C 1.47390 * 135.85368 * 179.97438 * 10 8 7 14 14 C 1.53515 * 117.21288 * 267.27736 * 12 11 10 15 15 C 1.54620 * 102.70324 * 262.92948 * 14 12 11 16 16 N 1.47147 * 107.37975 * 339.38509 * 15 14 12 17 17 C 1.36935 * 125.58223 * 179.11293 * 16 15 14 18 18 H 1.08001 * 119.99868 * 174.74151 * 17 16 15 19 19 C 1.38809 * 120.00194 * 354.73327 * 17 16 15 20 20 N 1.31623 * 119.99754 * 7.06365 * 19 17 16 21 21 Si 1.86804 * 120.00388 * 187.05969 * 19 17 16 22 22 H 1.48494 * 109.46997 * 94.98979 * 21 19 17 23 23 H 1.48494 * 109.47194 * 214.99117 * 21 19 17 24 24 H 1.48501 * 109.46825 * 334.98955 * 21 19 17 25 25 C 1.47753 * 108.83827 * 359.08740 * 16 15 14 26 26 C 1.36043 * 105.72562 * 180.02562 * 7 6 5 27 27 O 1.33811 * 109.85758 * 0.02562 * 26 7 6 28 28 C 1.34909 * 111.35253 * 359.72939 * 27 26 7 29 29 H 1.09005 * 109.47088 * 90.00104 * 1 2 3 30 30 H 1.08999 * 109.47707 * 329.99968 * 1 2 3 31 31 H 1.09001 * 109.47054 * 209.99823 * 1 2 3 32 32 H 1.07999 * 119.67680 * 0.02622 * 3 2 1 33 33 H 1.08000 * 119.90583 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.18635 * 179.97438 * 5 4 3 35 35 H 1.08997 * 113.54242 * 268.99271 * 11 10 8 36 36 H 1.09002 * 113.54708 * 39.66949 * 11 10 8 37 37 H 1.09002 * 113.54611 * 320.33244 * 13 10 8 38 38 H 1.08999 * 113.54019 * 90.93422 * 13 10 8 39 39 H 1.09004 * 110.76410 * 21.23231 * 14 12 11 40 40 H 1.09000 * 110.76391 * 144.62176 * 14 12 11 41 41 H 1.09001 * 109.86764 * 98.83507 * 15 14 12 42 42 H 1.09004 * 109.86704 * 219.93493 * 15 14 12 43 43 H 0.96999 * 119.99758 * 179.97438 * 20 19 17 44 44 H 1.09001 * 110.40350 * 263.50599 * 25 16 15 45 45 H 1.08997 * 110.40550 * 141.08095 * 25 16 15 46 46 H 1.08002 * 125.07904 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1940 0.0000 4 6 3.5830 1.2096 0.0005 5 6 4.2899 0.0258 0.0005 6 6 3.6045 -1.1843 0.0005 7 6 4.0166 -2.6022 0.0001 8 6 5.3903 -3.1277 -0.0011 9 8 6.3349 -2.3610 -0.0023 10 7 5.6027 -4.4587 -0.0009 11 6 4.7557 -5.6648 0.0068 12 6 5.9114 -6.3968 -0.6574 13 6 6.7831 -5.3413 -0.0022 14 6 5.9184 -6.4520 -2.1915 15 6 5.2950 -7.8362 -2.4849 16 7 5.4421 -8.6511 -1.2685 17 6 5.0012 -9.9383 -1.1137 18 1 5.2317 -10.4830 -0.2100 19 6 4.2579 -10.5429 -2.1180 20 7 4.0944 -9.9337 -3.2733 21 14 3.4897 -12.2212 -1.8302 22 1 2.0847 -12.0518 -1.3802 23 1 3.5141 -13.0001 -3.0942 24 1 4.2596 -12.9457 -0.7874 25 6 6.1440 -7.8535 -0.2418 26 6 2.8620 -3.3217 -0.0002 27 8 1.8106 -2.4940 -0.0005 28 6 2.2019 -1.2029 0.0055 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 0.8899 0.5138 31 1 -0.3633 -0.8900 0.5138 32 1 1.6515 2.1263 0.0004 33 1 4.1108 2.1518 0.0001 34 1 5.3699 0.0382 0.0005 35 1 4.5271 -6.0298 1.0081 36 1 3.8714 -5.5799 -0.6248 37 1 7.5916 -4.9863 -0.6413 38 1 7.1234 -5.6146 0.9966 39 1 5.3037 -5.6548 -2.6097 40 1 6.9371 -6.3977 -2.5755 41 1 4.2388 -7.7225 -2.7290 42 1 5.8197 -8.3105 -3.3142 43 1 3.5753 -10.3563 -3.9753 44 1 7.2094 -8.0839 -0.2443 45 1 5.7161 -8.0407 0.7430 46 1 2.8027 -4.4001 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072817189.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:04 Heat of formation + Delta-G solvation = 47.871109 kcal Electronic energy + Delta-G solvation = -29059.315456 eV Core-core repulsion = 25109.904869 eV Total energy + Delta-G solvation = -3949.410586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.71849 -41.91847 -39.50875 -39.10759 -37.31351 -34.70131 -34.09548 -32.72092 -31.39648 -30.77376 -29.94866 -27.83673 -27.53659 -27.25001 -25.72499 -24.27847 -23.39458 -22.86488 -22.11644 -20.29611 -19.76794 -18.90814 -18.61711 -18.10771 -17.49901 -17.16005 -16.89872 -16.68970 -16.58943 -16.39604 -15.82623 -15.59591 -15.32642 -14.91564 -14.51292 -14.36393 -14.28778 -14.11263 -13.87768 -13.72637 -13.61059 -13.31068 -13.23418 -12.90774 -12.86484 -12.76756 -12.60146 -12.25724 -12.02419 -11.99940 -11.92823 -11.82961 -11.71544 -11.23997 -11.12165 -11.06311 -10.63537 -9.83652 -9.70863 -9.19863 -8.83469 -7.81240 -5.14570 -0.33653 0.23966 0.61934 1.49442 1.51016 1.51218 1.60039 1.68008 2.09534 2.53483 2.66776 3.15363 3.27988 3.29829 3.42930 3.55562 3.67318 3.78640 3.80727 3.96263 4.03825 4.19663 4.24129 4.28712 4.37852 4.42099 4.47177 4.54487 4.62146 4.66513 4.70070 4.78063 4.80502 4.85937 4.93751 4.97399 5.04205 5.16494 5.20614 5.25249 5.25983 5.38320 5.44764 5.53288 5.54376 5.68641 5.81336 5.99468 6.23778 6.55789 6.98765 7.14848 7.82573 8.47020 9.29645 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016854 B = 0.002613 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.947001 B =10712.597783 C =11869.644904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.075 4.075 3 C -0.093 4.093 4 C -0.118 4.118 5 C -0.097 4.097 6 C -0.115 4.115 7 C -0.253 4.253 8 C 0.613 3.387 9 O -0.581 6.581 10 N -0.639 5.639 11 C 0.113 3.887 12 C -0.096 4.096 13 C 0.129 3.871 14 C -0.104 4.104 15 C 0.189 3.811 16 N -0.624 5.624 17 C -0.234 4.234 18 H 0.087 0.913 19 C -0.065 4.065 20 N -0.951 5.951 21 Si 0.972 3.028 22 H -0.287 1.287 23 H -0.301 1.301 24 H -0.267 1.267 25 C 0.152 3.848 26 C 0.085 3.915 27 O -0.183 6.183 28 C 0.023 3.977 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.175 0.825 33 H 0.161 0.839 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.017 0.983 42 H 0.001 0.999 43 H 0.245 0.755 44 H 0.034 0.966 45 H 0.062 0.938 46 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.136 20.962 9.170 23.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.075 4.075 3 C -0.111 4.111 4 C -0.135 4.135 5 C -0.115 4.115 6 C -0.116 4.116 7 C -0.258 4.258 8 C 0.406 3.594 9 O -0.463 6.463 10 N -0.372 5.372 11 C -0.009 4.009 12 C -0.098 4.098 13 C 0.007 3.993 14 C -0.142 4.142 15 C 0.064 3.936 16 N -0.351 5.351 17 C -0.363 4.363 18 H 0.105 0.895 19 C -0.258 4.258 20 N -0.600 5.600 21 Si 0.801 3.199 22 H -0.214 1.214 23 H -0.229 1.229 24 H -0.192 1.192 25 C 0.027 3.973 26 C 0.016 3.984 27 O -0.082 6.082 28 C -0.023 4.023 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.192 0.808 33 H 0.178 0.822 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.131 0.869 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.035 0.965 42 H 0.019 0.981 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.081 0.919 46 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -5.064 21.375 9.071 23.766 hybrid contribution 0.102 -1.470 -0.499 1.555 sum -4.963 19.905 8.572 22.233 Atomic orbital electron populations 1.20816 0.88223 1.04168 1.03554 1.19300 0.97826 0.87766 1.02618 1.21317 0.93923 0.97362 0.98467 1.21465 0.94626 0.97995 0.99453 1.20763 1.00413 0.90791 0.99511 1.19691 0.93345 0.92991 1.05589 1.20908 0.93536 0.93434 1.17901 1.16730 0.87190 0.79927 0.75554 1.90731 1.44876 1.56935 1.53732 1.49603 1.12847 1.02814 1.71970 1.23227 0.95330 0.79985 1.02316 1.21953 0.97191 0.94637 0.96004 1.22841 0.89783 0.84647 1.02036 1.22269 1.01158 0.97264 0.93501 1.20924 0.96819 0.87591 0.88270 1.44820 1.67653 1.11430 1.11182 1.19446 1.25715 0.89025 1.02076 0.89530 1.25591 1.01782 1.02310 0.96148 1.70190 1.45404 1.39813 1.04609 0.85146 0.78579 0.79606 0.76549 1.21445 1.22872 1.19198 1.21309 0.95766 0.87476 0.92757 1.25319 0.82772 0.96897 0.93362 1.83860 1.34800 1.14881 1.74698 1.19784 0.92220 0.84058 1.06276 0.90071 0.88454 0.91889 0.80785 0.82187 0.86172 0.86257 0.89674 0.90357 0.86897 0.91350 0.90930 0.96492 0.98098 0.94614 0.94787 0.91949 0.74275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.02 71.23 0.71 -0.69 16 2 C -0.07 -1.40 5.89 -19.79 -0.12 -1.51 16 3 C -0.09 -1.38 9.66 22.28 0.22 -1.17 16 4 C -0.12 -2.08 10.04 22.28 0.22 -1.86 16 5 C -0.10 -2.49 9.88 22.39 0.22 -2.27 16 6 C -0.11 -3.29 6.29 -20.09 -0.13 -3.42 16 7 C -0.25 -7.38 6.31 -18.98 -0.12 -7.50 16 8 C 0.61 19.81 8.05 86.56 0.70 20.51 16 9 O -0.58 -22.51 17.06 -4.20 -0.07 -22.58 16 10 N -0.64 -17.50 3.70 -864.23 -3.19 -20.70 16 11 C 0.11 2.75 6.43 83.76 0.54 3.29 16 12 C -0.10 -2.78 1.06 -52.63 -0.06 -2.83 16 13 C 0.13 3.24 8.02 83.66 0.67 3.91 16 14 C -0.10 -3.57 6.40 31.32 0.20 -3.37 16 15 C 0.19 8.79 5.40 86.81 0.47 9.25 16 16 N -0.62 -29.24 3.41 -693.48 -2.36 -31.61 16 17 C -0.23 -12.20 10.26 84.03 0.86 -11.34 16 18 H 0.09 4.28 7.84 -2.91 -0.02 4.26 16 19 C -0.07 -3.56 5.48 84.86 0.46 -3.10 16 20 N -0.95 -55.47 10.35 21.65 0.22 -55.25 16 21 Si 0.97 44.06 29.56 68.60 2.03 46.09 16 22 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 25 C 0.15 5.23 6.70 86.23 0.58 5.81 16 26 C 0.08 2.02 11.22 67.31 0.75 2.78 16 27 O -0.18 -4.54 10.53 -3.88 -0.04 -4.58 16 28 C 0.02 0.57 7.05 22.93 0.16 0.73 16 29 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.10 0.72 8.08 -2.39 -0.02 0.70 16 31 H 0.06 0.88 8.09 -2.39 -0.02 0.86 16 32 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.12 3.38 7.54 -2.91 -0.02 3.35 16 35 H 0.12 2.35 8.06 -2.39 -0.02 2.33 16 36 H 0.09 2.02 6.27 -2.39 -0.01 2.01 16 37 H 0.08 2.03 8.13 -2.39 -0.02 2.02 16 38 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.07 2.26 8.07 -2.38 -0.02 2.24 16 40 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.02 0.88 7.30 -2.39 -0.02 0.86 16 42 H 0.00 0.04 7.60 -2.39 -0.02 0.02 16 43 H 0.24 14.02 8.31 -92.71 -0.77 13.25 16 44 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.06 1.94 8.00 -2.39 -0.02 1.92 16 46 H 0.24 4.32 5.12 -2.91 -0.01 4.31 16 Total: -1.00 -73.70 377.19 3.93 -69.76 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 1.00 Total: 11.64 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 6.35 Total: 7.22 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -5.33 Total: -107.55 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.11 Total: -27.16 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -73.70 3.93 -69.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072817189.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.636 kcal (2) G-P(sol) polarization free energy of solvation -73.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds