Wall clock time and date at job start Sat Apr 11 2020 06:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.45558 * 2 1 4 4 C 1.34777 * 119.99967 * 60.03144 * 3 2 1 5 5 O 1.21281 * 119.99976 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99731 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.47071 * 179.97438 * 6 4 3 8 8 C 1.53000 * 117.50223 * 185.00289 * 7 6 4 9 9 C 1.52997 * 117.49889 * 116.37551 * 7 6 4 10 10 C 1.53041 * 109.45164 * 119.96410 * 2 1 3 11 11 C 1.53194 * 109.31286 * 181.38109 * 10 2 1 12 12 N 1.46927 * 108.77520 * 305.36644 * 11 10 2 13 13 C 1.34774 * 120.62881 * 233.63006 * 12 11 10 14 14 O 1.21281 * 120.00327 * 179.97438 * 13 12 11 15 15 C 1.50703 * 120.00110 * 359.97438 * 13 12 11 16 16 S 1.81003 * 109.47313 * 179.97438 * 15 13 12 17 17 C 1.76195 * 100.00051 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00005 * 0.02562 * 17 16 15 19 19 C 1.38804 * 119.99840 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00078 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99759 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47268 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47164 * 119.99970 * 21 19 17 24 24 H 1.48501 * 109.47012 * 239.99638 * 21 19 17 25 25 C 1.46922 * 118.73866 * 53.60814 * 12 11 10 26 26 C 1.53038 * 109.46415 * 240.03028 * 2 1 3 27 27 H 1.08998 * 109.47455 * 60.00549 * 1 2 3 28 28 H 1.09005 * 109.46983 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47766 * 299.99773 * 1 2 3 30 30 H 0.97005 * 120.00114 * 240.01942 * 3 2 1 31 31 H 1.08999 * 109.47072 * 60.00225 * 6 4 3 32 32 H 1.08991 * 109.47502 * 299.99660 * 6 4 3 33 33 H 1.09002 * 115.55911 * 330.68979 * 7 6 4 34 34 H 1.08990 * 117.49990 * 145.01974 * 8 7 6 35 35 H 1.09004 * 117.49237 * 359.97438 * 8 7 6 36 36 H 1.08999 * 117.49685 * 0.02562 * 9 7 6 37 37 H 1.08999 * 117.52022 * 214.97106 * 9 7 6 38 38 H 1.08994 * 109.49533 * 301.33493 * 10 2 1 39 39 H 1.08995 * 109.49571 * 61.42925 * 10 2 1 40 40 H 1.09004 * 109.58446 * 185.57649 * 11 10 2 41 41 H 1.08997 * 109.69972 * 65.22594 * 11 10 2 42 42 H 1.09000 * 109.46923 * 299.99763 * 15 13 12 43 43 H 1.09002 * 109.47461 * 59.99842 * 15 13 12 44 44 H 0.96995 * 120.00215 * 180.02562 * 20 19 17 45 45 H 1.08996 * 109.58403 * 186.59912 * 25 12 11 46 46 H 1.09002 * 109.69986 * 66.24956 * 25 12 11 47 47 H 1.09004 * 109.49660 * 298.57539 * 26 2 1 48 48 H 1.08999 * 109.49717 * 58.63844 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0179 1.3814 0.0000 4 6 1.6926 2.2110 1.0112 5 8 0.9955 1.8141 1.9208 6 6 2.1951 3.6318 1.0114 7 6 1.6849 4.3529 2.2606 8 6 1.9902 5.8467 2.3883 9 6 2.7262 4.8372 3.2716 10 6 2.0396 -0.7207 1.2502 11 6 3.5711 -0.6888 1.2645 12 7 4.0676 -1.2491 0.0003 13 6 4.9610 -2.2582 0.0004 14 8 5.3630 -2.7125 -1.0498 15 6 5.4607 -2.8221 1.3056 16 16 6.6397 -4.1551 0.9751 17 6 7.0501 -4.6167 2.6253 18 1 6.5953 -4.1023 3.4589 19 6 7.9579 -5.6416 2.8538 20 7 8.5125 -6.2682 1.8378 21 14 8.3924 -6.1314 4.6032 22 1 7.6388 -5.2792 5.5576 23 1 8.0345 -7.5561 4.8218 24 1 9.8499 -5.9482 4.8210 25 6 3.5713 -0.6889 -1.2640 26 6 2.0399 -0.7208 -1.2500 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 2.5753 1.6989 -0.7277 31 1 1.8315 4.1459 0.1217 32 1 3.2850 3.6318 1.0112 33 1 0.7308 3.9991 2.6513 34 1 1.2370 6.4755 2.8629 35 1 2.5549 6.3156 1.5824 36 1 3.7748 4.6424 3.0464 37 1 2.4575 4.8023 4.3273 38 1 1.6569 -0.2206 2.1398 39 1 1.6974 -1.7555 1.2384 40 1 3.9412 -1.2847 2.0988 41 1 3.9162 0.3399 1.3688 42 1 5.9525 -2.0349 1.8770 43 1 4.6198 -3.2148 1.8774 44 1 9.1466 -6.9846 1.9975 45 1 3.9417 -1.2848 -2.0981 46 1 3.9144 0.3403 -1.3696 47 1 1.6977 -1.7557 -1.2382 48 1 1.6569 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072887332.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:13 Heat of formation + Delta-G solvation = -52.411661 kcal Electronic energy + Delta-G solvation = -27784.945152 eV Core-core repulsion = 23966.629930 eV Total energy + Delta-G solvation = -3818.315222 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.02673 -39.47376 -37.96575 -36.94809 -34.65055 -32.43963 -32.41997 -31.67037 -29.57254 -29.23257 -27.90836 -25.49401 -23.53370 -23.50549 -22.72083 -22.20533 -20.48436 -20.08285 -18.90738 -17.83027 -17.57148 -16.71279 -16.03307 -15.90433 -15.66646 -15.33281 -15.11201 -14.80432 -14.56012 -14.20580 -13.98798 -13.89130 -13.77785 -13.73277 -13.23039 -12.86201 -12.76058 -12.52373 -12.39513 -12.17039 -11.92259 -11.85452 -11.80557 -11.68008 -11.41822 -11.07023 -11.04340 -11.01005 -10.87079 -10.74263 -10.69228 -10.36445 -9.79476 -9.75141 -9.36907 -9.33313 -9.07475 -8.52156 -8.22521 -6.50417 -6.21902 -3.92360 2.40444 2.81569 2.93542 3.03770 3.21702 3.26501 3.31516 3.46734 3.59542 4.19900 4.24594 4.30847 4.45200 4.50570 4.56880 4.65076 4.75778 4.83996 4.94632 5.05000 5.09008 5.13420 5.15077 5.19829 5.25267 5.29708 5.35842 5.39147 5.50884 5.55859 5.57224 5.57972 5.72800 5.75327 5.76910 5.79491 5.87362 5.90069 5.95825 6.01844 6.05095 6.12287 6.34629 6.62982 7.25878 7.53877 7.60169 7.99879 8.35500 8.54411 9.23687 10.85592 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013295 B = 0.002547 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.504201 B =10991.545024 C =12210.964237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.179 3.821 3 N -0.723 5.723 4 C 0.518 3.482 5 O -0.532 6.532 6 C -0.113 4.113 7 C -0.140 4.140 8 C -0.182 4.182 9 C -0.178 4.178 10 C -0.146 4.146 11 C 0.114 3.886 12 N -0.619 5.619 13 C 0.536 3.464 14 O -0.518 6.518 15 C -0.150 4.150 16 S -0.062 6.062 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.113 3.887 26 C -0.137 4.137 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.399 0.601 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.097 0.903 46 H 0.059 0.941 47 H 0.086 0.914 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.487 22.663 -3.559 28.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.093 3.907 3 N -0.376 5.376 4 C 0.305 3.695 5 O -0.408 6.408 6 C -0.153 4.153 7 C -0.158 4.158 8 C -0.219 4.219 9 C -0.214 4.214 10 C -0.185 4.185 11 C -0.010 4.010 12 N -0.355 5.355 13 C 0.324 3.676 14 O -0.392 6.392 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.010 4.010 26 C -0.176 4.176 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.233 0.767 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.136 0.864 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.115 0.885 46 H 0.077 0.923 47 H 0.104 0.896 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.258 21.541 -4.524 27.364 hybrid contribution 0.116 0.416 1.983 2.029 sum -16.142 21.957 -2.541 27.370 Atomic orbital electron populations 1.22198 0.93955 1.02606 1.03197 1.20286 0.94112 0.80625 0.95640 1.46217 1.54000 1.11955 1.25433 1.20513 0.79985 0.87425 0.81564 1.90640 1.37562 1.76983 1.35629 1.21247 1.02204 0.92620 0.99195 1.22034 1.01308 0.95309 0.97149 1.23001 1.03810 0.91976 1.03137 1.23042 0.97526 1.03722 0.97157 1.22359 0.95475 1.01409 0.99217 1.21634 0.93810 0.99029 0.86487 1.48104 1.44550 1.36356 1.06508 1.20336 0.77704 0.78229 0.91332 1.90686 1.56503 1.58703 1.33338 1.23552 1.04662 1.04671 0.97200 1.85380 1.49840 1.36834 1.11459 1.22897 1.30487 1.22727 0.92078 0.90905 1.24994 0.95091 0.95246 0.98279 1.70024 1.27649 1.22299 1.30327 0.86118 0.78306 0.78439 0.82650 1.19591 1.20556 1.20571 1.21442 0.92704 0.98691 0.88141 1.22250 0.96229 1.02129 0.96946 0.92740 0.91764 0.90245 0.76663 0.88651 0.88803 0.86396 0.88735 0.88824 0.88766 0.88710 0.88499 0.90529 0.89254 0.91926 0.89357 0.89272 0.92246 0.88500 0.92252 0.89578 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 8.40 37.15 0.31 -1.08 16 2 C 0.18 1.54 0.66 -131.78 -0.09 1.46 16 3 N -0.72 -5.20 4.10 -47.57 -0.20 -5.40 16 4 C 0.52 4.42 7.25 -10.98 -0.08 4.34 16 5 O -0.53 -6.29 11.78 5.56 0.07 -6.23 16 6 C -0.11 -0.69 5.98 -27.88 -0.17 -0.85 16 7 C -0.14 -1.03 5.41 -90.62 -0.49 -1.52 16 8 C -0.18 -1.09 10.25 -26.73 -0.27 -1.36 16 9 C -0.18 -1.25 10.18 -26.73 -0.27 -1.52 16 10 C -0.15 -1.54 4.67 -26.61 -0.12 -1.66 16 11 C 0.11 1.33 6.08 -3.71 -0.02 1.31 16 12 N -0.62 -8.49 2.97 -172.77 -0.51 -9.00 16 13 C 0.54 10.09 7.72 -10.99 -0.08 10.01 16 14 O -0.52 -11.65 15.27 5.56 0.08 -11.56 16 15 C -0.15 -3.08 4.50 36.01 0.16 -2.92 16 16 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 17 C -0.53 -15.25 9.50 30.94 0.29 -14.95 16 18 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 21 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.11 1.22 6.16 -3.72 -0.02 1.20 16 26 C -0.14 -1.15 4.96 -26.62 -0.13 -1.28 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.83 6.17 -51.93 -0.32 0.51 16 30 H 0.40 2.05 7.27 -40.82 -0.30 1.75 16 31 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.48 7.88 -51.93 -0.41 0.07 16 33 H 0.12 1.07 7.31 -51.93 -0.38 0.69 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.62 8.03 -51.93 -0.42 0.21 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 1.13 6.20 -51.93 -0.32 0.81 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.12 5.93 -51.93 -0.31 0.81 16 41 H 0.06 0.68 7.74 -51.93 -0.40 0.28 16 42 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16 43 H 0.09 1.71 7.69 -51.91 -0.40 1.31 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.10 1.23 7.00 -51.93 -0.36 0.87 16 46 H 0.06 0.51 6.94 -51.93 -0.36 0.15 16 47 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 391.50 15.07 5.90 5.90 Total: -1.00 -35.04 391.50 -9.98 -45.02 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.74 Total: 1.02 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -1.08 Total: -6.85 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.03 Total: -39.87 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: 0.15 Total: -17.79 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.04 -9.98 -45.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072887332.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.393 kcal (2) G-P(sol) polarization free energy of solvation -35.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds