Wall clock time and date at job start Sat Apr 11 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 115.56480 * 2 1 4 4 O 1.21279 * 120.00195 * 232.39285 * 3 2 1 5 5 N 1.34779 * 119.99492 * 52.39232 * 3 2 1 6 6 C 1.46923 * 120.62707 * 185.58496 * 5 3 2 7 7 C 1.52766 * 109.00875 * 233.58532 * 6 5 3 8 8 C 1.53037 * 109.38323 * 305.59220 * 7 6 5 9 9 C 1.52998 * 109.46120 * 181.25973 * 8 7 6 10 10 N 1.46505 * 109.45660 * 301.21505 * 8 7 6 11 11 C 1.34770 * 120.00099 * 300.07253 * 10 8 7 12 12 O 1.21280 * 120.00247 * 359.97438 * 11 10 8 13 13 C 1.50708 * 120.00133 * 180.02562 * 11 10 8 14 14 S 1.80995 * 109.47329 * 179.97438 * 13 11 10 15 15 C 1.76198 * 100.00040 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99964 * 359.97438 * 15 14 13 17 17 C 1.38797 * 120.00033 * 179.97438 * 15 14 13 18 18 N 1.31633 * 120.00200 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 120.00007 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47216 * 89.99875 * 19 17 15 21 21 H 1.48500 * 109.46880 * 209.99997 * 19 17 15 22 22 H 1.48500 * 109.46828 * 329.99867 * 19 17 15 23 23 C 1.53035 * 109.54181 * 61.23616 * 8 7 6 24 24 C 1.46924 * 120.63282 * 5.86467 * 5 3 2 25 25 C 1.53004 * 117.49914 * 214.31510 * 2 1 3 26 26 C 1.53005 * 60.03038 * 252.51930 * 25 2 1 27 27 H 1.09001 * 109.47337 * 203.71434 * 1 2 3 28 28 H 1.08999 * 109.47148 * 323.71743 * 1 2 3 29 29 H 1.09004 * 109.46940 * 83.70945 * 1 2 3 30 30 H 1.09002 * 109.58933 * 353.41663 * 6 5 3 31 31 H 1.08995 * 109.58896 * 113.84232 * 6 5 3 32 32 H 1.08999 * 109.56424 * 185.54858 * 7 6 5 33 33 H 1.09001 * 109.38545 * 65.51158 * 7 6 5 34 34 H 1.09001 * 109.46960 * 299.92620 * 9 8 7 35 35 H 1.09004 * 109.46874 * 59.93155 * 9 8 7 36 36 H 1.08997 * 109.46997 * 179.97438 * 9 8 7 37 37 H 0.97004 * 119.99831 * 120.07078 * 10 8 7 38 38 H 1.09001 * 109.46496 * 299.99877 * 13 11 10 39 39 H 1.08996 * 109.46902 * 59.99079 * 13 11 10 40 40 H 0.96998 * 119.99764 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.50245 * 178.68942 * 23 8 7 42 42 H 1.09004 * 109.52405 * 58.60302 * 23 8 7 43 43 H 1.08996 * 109.58884 * 246.15489 * 24 5 3 44 44 H 1.08998 * 109.58657 * 6.43747 * 24 5 3 45 45 H 1.09004 * 117.50166 * 145.01895 * 25 2 1 46 46 H 1.09004 * 117.49701 * 0.02562 * 25 2 1 47 47 H 1.08999 * 117.49438 * 107.47473 * 26 25 2 48 48 H 1.08992 * 117.50184 * 252.47008 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1803 1.3595 0.0000 4 8 3.0202 1.6300 -0.8321 5 7 1.8285 2.2747 0.9247 6 6 2.3617 3.6425 0.8649 7 6 2.9981 3.9878 2.2101 8 6 1.9785 3.7586 3.3280 9 6 2.6038 4.1337 4.6730 10 7 0.7974 4.5921 3.0898 11 6 0.9200 5.9328 3.0289 12 8 2.0080 6.4494 3.1717 13 6 -0.2949 6.7903 2.7844 14 16 0.1921 8.5333 2.7580 15 6 -1.3744 9.2843 2.4631 16 1 -2.2566 8.6701 2.3586 17 6 -1.4746 10.6652 2.3652 18 7 -2.6447 11.2262 2.1444 19 14 0.0514 11.7275 2.5453 20 1 0.6758 11.9271 1.2128 21 1 -0.3272 13.0448 3.1169 22 1 1.0187 11.0551 3.4495 23 6 1.5663 2.2850 3.3507 24 6 0.9092 1.9220 2.0153 25 6 2.2364 -1.1210 -0.7651 26 6 2.2367 -1.1219 0.7649 27 1 -0.3634 -0.9409 0.4133 28 1 -0.3633 0.8284 0.6081 29 1 -0.3633 0.1126 -1.0215 30 1 3.1142 3.7073 0.0789 31 1 1.5519 4.3416 0.6567 32 1 3.3088 5.0325 2.2094 33 1 3.8668 3.3500 2.3737 34 1 3.4822 3.5134 4.8509 35 1 2.8974 5.1834 4.6570 36 1 1.8776 3.9710 5.4694 37 1 -0.0728 4.1790 2.9759 38 1 -0.7415 6.5229 1.8267 39 1 -1.0205 6.6281 3.5814 40 1 -2.7147 12.1912 2.0763 41 1 0.8578 2.1177 4.1620 42 1 2.4479 1.6624 3.5035 43 1 -0.0215 2.4779 1.9029 44 1 0.7016 0.8523 1.9865 45 1 3.1715 -0.8751 -1.2684 46 1 1.6111 -1.8582 -1.2688 47 1 1.6113 -1.8595 1.2678 48 1 3.1719 -0.8771 1.2682 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073081463.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:18 Heat of formation + Delta-G solvation = -44.254005 kcal Electronic energy + Delta-G solvation = -28316.841438 eV Core-core repulsion = 24498.879958 eV Total energy + Delta-G solvation = -3817.961480 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.17162 -39.90531 -37.77017 -36.90270 -34.78920 -32.45871 -32.23766 -31.59289 -29.32502 -28.82117 -28.40919 -25.62926 -24.64943 -23.83640 -22.87842 -22.25386 -21.21980 -19.69182 -18.77953 -17.95097 -17.17029 -16.55180 -16.38602 -15.97121 -15.42232 -15.24182 -15.04696 -14.97270 -14.44066 -14.22153 -14.10572 -13.81992 -13.66417 -13.52752 -13.33588 -12.97354 -12.81007 -12.75723 -12.54156 -12.37113 -12.13710 -12.02845 -11.91388 -11.78830 -11.45242 -11.28423 -11.08704 -11.02179 -10.90531 -10.76768 -10.61383 -10.41592 -9.92152 -9.86642 -9.33370 -9.10595 -9.01542 -8.79587 -8.52111 -6.93339 -6.30607 -4.02313 2.26153 2.64136 2.74218 2.93582 3.27317 3.32643 3.33353 3.48749 3.62448 4.04596 4.21988 4.26516 4.31453 4.41845 4.48543 4.56315 4.60791 4.70614 4.83449 4.90039 5.07896 5.08583 5.16516 5.17995 5.21828 5.26480 5.27236 5.33649 5.39787 5.48081 5.54631 5.57380 5.63982 5.65729 5.71111 5.72892 5.74412 5.84398 5.89820 5.97953 6.03649 6.27383 6.34221 6.61119 7.13394 7.59914 7.92435 7.92976 8.39775 8.47664 9.15631 10.78659 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019529 B = 0.002581 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.434990 B =10844.712394 C =11271.672335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.164 4.164 3 C 0.551 3.449 4 O -0.539 6.539 5 N -0.604 5.604 6 C 0.115 3.885 7 C -0.144 4.144 8 C 0.181 3.819 9 C -0.163 4.163 10 N -0.729 5.729 11 C 0.534 3.466 12 O -0.513 6.513 13 C -0.126 4.126 14 S -0.139 6.139 15 C -0.522 4.522 16 H 0.087 0.913 17 C 0.095 3.905 18 N -0.880 5.880 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C -0.137 4.137 24 C 0.102 3.898 25 C -0.144 4.144 26 C -0.156 4.156 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.396 0.604 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.271 0.729 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.528 -27.586 1.355 28.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.167 4.167 3 C 0.339 3.661 4 O -0.415 6.415 5 N -0.337 5.337 6 C -0.007 4.007 7 C -0.183 4.183 8 C 0.094 3.906 9 C -0.221 4.221 10 N -0.384 5.384 11 C 0.320 3.680 12 O -0.388 6.388 13 C -0.276 4.276 14 S 0.087 5.913 15 C -0.669 4.669 16 H 0.105 0.895 17 C -0.113 4.113 18 N -0.517 5.517 19 Si 0.682 3.318 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.159 1.159 23 C -0.175 4.175 24 C -0.021 4.021 25 C -0.182 4.182 26 C -0.194 4.194 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.231 0.769 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.115 0.885 45 H 0.124 0.876 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.686 -26.391 1.118 27.806 hybrid contribution -1.450 -0.086 -0.128 1.458 sum 7.236 -26.478 0.990 27.466 Atomic orbital electron populations 1.21581 0.90110 1.03033 1.03194 1.21449 0.96158 0.89433 1.09676 1.19559 0.81352 0.84723 0.80446 1.90694 1.32726 1.79479 1.38625 1.47999 1.46985 1.11635 1.27089 1.21519 0.99408 0.81220 0.98569 1.22272 0.97812 1.04747 0.93462 1.20195 0.85896 0.89045 0.95417 1.22214 1.00394 1.04405 0.95128 1.46150 1.10494 1.06184 1.75618 1.20207 0.90542 0.81746 0.75456 1.90636 1.27774 1.72781 1.47579 1.23297 0.98694 1.00328 1.05302 1.84774 1.16010 0.95578 1.94960 1.22313 0.92655 0.95186 1.56764 0.89452 1.24719 0.96337 0.97049 0.93230 1.69938 1.23392 1.11442 1.46929 0.86734 0.83819 0.80823 0.80459 1.19215 1.19969 1.15920 1.22244 1.02418 0.95437 0.97426 1.21955 0.92363 1.01860 0.85919 1.23014 1.02685 0.98297 0.94156 1.23150 1.02127 0.98736 0.95339 0.91335 0.90887 0.91559 0.89011 0.91122 0.87929 0.91150 0.92220 0.89757 0.92551 0.76905 0.88738 0.88620 0.91936 0.89748 0.89870 0.91186 0.88493 0.87649 0.87895 0.87730 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 8.99 37.16 0.33 -0.38 16 2 C -0.16 -1.29 1.50 -155.62 -0.23 -1.53 16 3 C 0.55 6.29 7.10 -10.98 -0.08 6.21 16 4 O -0.54 -8.33 15.84 5.56 0.09 -8.24 16 5 N -0.60 -5.97 2.98 -173.03 -0.52 -6.49 16 6 C 0.11 1.36 6.16 -3.93 -0.02 1.34 16 7 C -0.14 -1.65 4.65 -26.83 -0.12 -1.78 16 8 C 0.18 1.78 0.66 -131.78 -0.09 1.69 16 9 C -0.16 -1.74 8.40 37.16 0.31 -1.42 16 10 N -0.73 -8.04 4.10 -47.57 -0.20 -8.24 16 11 C 0.53 8.52 7.27 -10.98 -0.08 8.44 16 12 O -0.51 -9.82 12.08 5.56 0.07 -9.76 16 13 C -0.13 -2.29 6.16 36.01 0.22 -2.07 16 14 S -0.14 -3.43 18.55 -107.50 -1.99 -5.42 16 15 C -0.52 -14.80 10.04 30.94 0.31 -14.49 16 16 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 17 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 18 N -0.88 -26.42 13.97 55.49 0.78 -25.64 16 19 Si 0.86 21.63 27.74 -169.99 -4.72 16.92 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 23 C -0.14 -0.90 4.96 -26.61 -0.13 -1.03 16 24 C 0.10 0.68 4.43 -3.71 -0.02 0.66 16 25 C -0.14 -1.06 9.76 -26.73 -0.26 -1.32 16 26 C -0.16 -0.94 9.78 -26.69 -0.26 -1.20 16 27 H 0.07 0.28 7.91 -51.93 -0.41 -0.13 16 28 H 0.07 0.40 5.22 -51.93 -0.27 0.13 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.09 1.24 7.00 -51.93 -0.36 0.88 16 31 H 0.07 0.90 7.74 -51.93 -0.40 0.50 16 32 H 0.10 1.47 6.20 -51.93 -0.32 1.15 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 1.18 6.17 -51.93 -0.32 0.86 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.40 3.36 7.27 -40.82 -0.30 3.06 16 38 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 39 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 40 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.42 6.80 -51.93 -0.35 0.07 16 44 H 0.10 0.48 5.02 -51.93 -0.26 0.22 16 45 H 0.11 0.95 7.79 -51.93 -0.40 0.54 16 46 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.10 0.42 8.06 -51.93 -0.42 0.00 16 48 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 384.49 15.07 5.79 5.79 Total: -1.00 -34.70 384.49 -8.54 -43.23 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.63 Total: 2.06 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -0.22 Total: -4.22 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.06 Total: -40.36 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.16 Total: -18.00 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.72 Total: 16.92 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -1.99 Total: -5.42 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.70 -8.54 -43.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073081463.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.019 kcal (2) G-P(sol) polarization free energy of solvation -34.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds