Wall clock time and date at job start Sat Apr 11 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 115.56480 * 2 1 4 4 O 1.21279 * 120.00195 * 232.39285 * 3 2 1 5 5 N 1.34779 * 119.99492 * 52.39232 * 3 2 1 6 6 C 1.46923 * 120.62707 * 185.58496 * 5 3 2 7 7 C 1.52766 * 109.00875 * 233.58532 * 6 5 3 8 8 C 1.53037 * 109.38323 * 305.59220 * 7 6 5 9 9 C 1.52998 * 109.46120 * 181.25973 * 8 7 6 10 10 N 1.46505 * 109.45660 * 301.21505 * 8 7 6 11 11 C 1.34770 * 120.00099 * 300.07253 * 10 8 7 12 12 O 1.21280 * 120.00247 * 359.97438 * 11 10 8 13 13 C 1.50708 * 120.00133 * 180.02562 * 11 10 8 14 14 S 1.80995 * 109.47329 * 179.97438 * 13 11 10 15 15 C 1.76198 * 100.00040 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99964 * 359.97438 * 15 14 13 17 17 C 1.38797 * 120.00033 * 179.97438 * 15 14 13 18 18 N 1.31633 * 120.00200 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 120.00007 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47216 * 89.99875 * 19 17 15 21 21 H 1.48500 * 109.46880 * 209.99997 * 19 17 15 22 22 H 1.48500 * 109.46828 * 329.99867 * 19 17 15 23 23 C 1.53035 * 109.54181 * 61.23616 * 8 7 6 24 24 C 1.46924 * 120.63282 * 5.86467 * 5 3 2 25 25 C 1.53004 * 117.49914 * 214.31510 * 2 1 3 26 26 C 1.53005 * 60.03038 * 252.51930 * 25 2 1 27 27 H 1.09001 * 109.47337 * 203.71434 * 1 2 3 28 28 H 1.08999 * 109.47148 * 323.71743 * 1 2 3 29 29 H 1.09004 * 109.46940 * 83.70945 * 1 2 3 30 30 H 1.09002 * 109.58933 * 353.41663 * 6 5 3 31 31 H 1.08995 * 109.58896 * 113.84232 * 6 5 3 32 32 H 1.08999 * 109.56424 * 185.54858 * 7 6 5 33 33 H 1.09001 * 109.38545 * 65.51158 * 7 6 5 34 34 H 1.09001 * 109.46960 * 299.92620 * 9 8 7 35 35 H 1.09004 * 109.46874 * 59.93155 * 9 8 7 36 36 H 1.08997 * 109.46997 * 179.97438 * 9 8 7 37 37 H 0.97004 * 119.99831 * 120.07078 * 10 8 7 38 38 H 1.09001 * 109.46496 * 299.99877 * 13 11 10 39 39 H 1.08996 * 109.46902 * 59.99079 * 13 11 10 40 40 H 0.96998 * 119.99764 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.50245 * 178.68942 * 23 8 7 42 42 H 1.09004 * 109.52405 * 58.60302 * 23 8 7 43 43 H 1.08996 * 109.58884 * 246.15489 * 24 5 3 44 44 H 1.08998 * 109.58657 * 6.43747 * 24 5 3 45 45 H 1.09004 * 117.50166 * 145.01895 * 25 2 1 46 46 H 1.09004 * 117.49701 * 0.02562 * 25 2 1 47 47 H 1.08999 * 117.49438 * 107.47473 * 26 25 2 48 48 H 1.08992 * 117.50184 * 252.47008 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1803 1.3595 0.0000 4 8 3.0202 1.6300 -0.8321 5 7 1.8285 2.2747 0.9247 6 6 2.3617 3.6425 0.8649 7 6 2.9981 3.9878 2.2101 8 6 1.9785 3.7586 3.3280 9 6 2.6038 4.1337 4.6730 10 7 0.7974 4.5921 3.0898 11 6 0.9200 5.9328 3.0289 12 8 2.0080 6.4494 3.1717 13 6 -0.2949 6.7903 2.7844 14 16 0.1921 8.5333 2.7580 15 6 -1.3744 9.2843 2.4631 16 1 -2.2566 8.6701 2.3586 17 6 -1.4746 10.6652 2.3652 18 7 -2.6447 11.2262 2.1444 19 14 0.0514 11.7275 2.5453 20 1 0.6758 11.9271 1.2128 21 1 -0.3272 13.0448 3.1169 22 1 1.0187 11.0551 3.4495 23 6 1.5663 2.2850 3.3507 24 6 0.9092 1.9220 2.0153 25 6 2.2364 -1.1210 -0.7651 26 6 2.2367 -1.1219 0.7649 27 1 -0.3634 -0.9409 0.4133 28 1 -0.3633 0.8284 0.6081 29 1 -0.3633 0.1126 -1.0215 30 1 3.1142 3.7073 0.0789 31 1 1.5519 4.3416 0.6567 32 1 3.3088 5.0325 2.2094 33 1 3.8668 3.3500 2.3737 34 1 3.4822 3.5134 4.8509 35 1 2.8974 5.1834 4.6570 36 1 1.8776 3.9710 5.4694 37 1 -0.0728 4.1790 2.9759 38 1 -0.7415 6.5229 1.8267 39 1 -1.0205 6.6281 3.5814 40 1 -2.7147 12.1912 2.0763 41 1 0.8578 2.1177 4.1620 42 1 2.4479 1.6624 3.5035 43 1 -0.0215 2.4779 1.9029 44 1 0.7016 0.8523 1.9865 45 1 3.1715 -0.8751 -1.2684 46 1 1.6111 -1.8582 -1.2688 47 1 1.6113 -1.8595 1.2678 48 1 3.1719 -0.8771 1.2682 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073081463.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:17 Heat of formation + Delta-G solvation = -67.530293 kcal Electronic energy + Delta-G solvation = -28317.850773 eV Core-core repulsion = 24498.879958 eV Total energy + Delta-G solvation = -3818.970815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.04038 -40.89566 -38.74716 -37.66191 -35.75455 -34.67232 -33.35917 -32.37695 -30.32222 -29.68542 -29.20340 -27.84496 -25.46382 -24.54889 -23.36880 -23.09584 -22.26325 -20.62806 -19.93039 -19.57763 -18.06712 -17.78006 -17.18322 -17.12386 -16.91648 -16.51794 -16.22027 -15.77564 -15.65523 -15.20213 -15.07144 -14.98760 -14.78657 -14.56938 -14.45355 -14.20733 -13.76112 -13.48713 -13.44053 -13.34260 -13.14216 -13.10112 -13.00662 -12.80042 -12.64231 -12.57602 -12.39690 -12.22725 -11.92454 -11.84722 -11.62821 -11.49411 -11.17627 -10.96464 -10.77231 -10.56572 -10.51167 -10.14074 -9.67934 -8.97684 -8.51951 -6.21475 1.00357 1.30579 1.45020 1.46362 1.56458 1.64421 1.87457 2.22996 2.27980 2.73021 2.77169 2.86554 3.39856 3.55337 3.68420 3.78867 3.84910 3.90378 3.93500 4.00981 4.06013 4.20924 4.26765 4.36394 4.45802 4.50796 4.64842 4.71646 4.74028 4.75702 4.80250 4.81295 4.85852 4.90793 4.94912 4.98714 5.02120 5.09198 5.11461 5.22693 5.29092 5.38266 5.49515 5.61875 5.70514 6.11349 6.35229 6.57169 6.93726 7.08934 7.28967 8.60479 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019529 B = 0.002581 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.434990 B =10844.712394 C =11271.672335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.172 4.172 3 C 0.541 3.459 4 O -0.593 6.593 5 N -0.599 5.599 6 C 0.120 3.880 7 C -0.137 4.137 8 C 0.181 3.819 9 C -0.160 4.160 10 N -0.705 5.705 11 C 0.539 3.461 12 O -0.548 6.548 13 C -0.113 4.113 14 S -0.174 6.174 15 C -0.527 4.527 16 H 0.062 0.938 17 C 0.045 3.955 18 N -0.918 5.918 19 Si 0.914 3.086 20 H -0.265 1.265 21 H -0.260 1.260 22 H -0.236 1.236 23 C -0.126 4.126 24 C 0.095 3.905 25 C -0.157 4.157 26 C -0.132 4.132 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.414 0.586 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.276 0.724 41 H 0.116 0.884 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.125 0.875 45 H 0.078 0.922 46 H 0.123 0.877 47 H 0.138 0.862 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.859 -30.833 3.055 31.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.175 4.175 3 C 0.331 3.669 4 O -0.474 6.474 5 N -0.330 5.330 6 C -0.003 4.003 7 C -0.176 4.176 8 C 0.095 3.905 9 C -0.218 4.218 10 N -0.360 5.360 11 C 0.324 3.676 12 O -0.426 6.426 13 C -0.264 4.264 14 S 0.052 5.948 15 C -0.675 4.675 16 H 0.080 0.920 17 C -0.161 4.161 18 N -0.556 5.556 19 Si 0.736 3.264 20 H -0.190 1.190 21 H -0.184 1.184 22 H -0.159 1.159 23 C -0.164 4.164 24 C -0.027 4.027 25 C -0.195 4.195 26 C -0.169 4.169 27 H 0.115 0.885 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.251 0.749 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.086 0.914 41 H 0.134 0.866 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.142 0.858 45 H 0.097 0.903 46 H 0.141 0.859 47 H 0.156 0.844 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.968 -29.686 2.849 30.868 hybrid contribution -1.239 0.785 -0.688 1.620 sum 6.729 -28.901 2.160 29.752 Atomic orbital electron populations 1.21617 0.88131 1.04792 1.03020 1.21464 0.97319 0.87424 1.11310 1.20330 0.80731 0.86144 0.79687 1.90667 1.35277 1.80686 1.40755 1.48066 1.46936 1.10337 1.27708 1.21258 0.98426 0.82598 0.98018 1.22147 0.98704 1.02782 0.93975 1.20353 0.84774 0.91079 0.94289 1.22156 1.01578 1.02343 0.95698 1.45908 1.12043 1.04405 1.73604 1.19810 0.88989 0.83166 0.75649 1.90651 1.28645 1.73792 1.49480 1.23295 1.00271 0.96040 1.06752 1.84703 1.14257 1.00799 1.94998 1.22475 0.93553 0.95408 1.56030 0.91997 1.25559 0.98991 0.98412 0.93099 1.70017 1.25241 1.12136 1.48197 0.85877 0.80432 0.79633 0.80485 1.18982 1.18438 1.15933 1.22243 1.03747 0.92144 0.98316 1.22311 0.91930 1.03867 0.84553 1.23063 1.02000 0.98769 0.95622 1.23273 1.01864 0.97567 0.94169 0.88519 0.90316 0.92601 0.91703 0.92222 0.91227 0.90530 0.90465 0.93516 0.91198 0.74857 0.87490 0.86956 0.91428 0.86587 0.88773 0.89891 0.85751 0.90349 0.85900 0.84406 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 8.99 71.98 0.65 -0.32 16 2 C -0.17 -2.31 1.50 -52.90 -0.08 -2.39 16 3 C 0.54 12.04 7.10 87.66 0.62 12.66 16 4 O -0.59 -19.23 15.84 -3.03 -0.05 -19.28 16 5 N -0.60 -10.98 2.98 -819.73 -2.44 -13.42 16 6 C 0.12 2.89 6.16 86.22 0.53 3.43 16 7 C -0.14 -3.12 4.65 30.53 0.14 -2.98 16 8 C 0.18 3.13 0.66 3.63 0.00 3.13 16 9 C -0.16 -3.05 8.40 71.98 0.60 -2.45 16 10 N -0.70 -13.89 4.10 -422.81 -1.73 -15.62 16 11 C 0.54 16.67 7.27 87.66 0.64 17.31 16 12 O -0.55 -21.19 12.08 -3.03 -0.04 -21.23 16 13 C -0.11 -4.00 6.16 71.24 0.44 -3.57 16 14 S -0.17 -8.60 18.55 -56.49 -1.05 -9.64 16 15 C -0.53 -30.36 10.04 67.95 0.68 -29.68 16 16 H 0.06 3.76 8.03 -2.91 -0.02 3.73 16 17 C 0.04 2.62 5.50 84.86 0.47 3.08 16 18 N -0.92 -55.83 13.97 21.65 0.30 -55.53 16 19 Si 0.91 45.06 27.74 68.60 1.90 46.96 16 20 H -0.26 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.24 -11.54 6.74 99.48 0.67 -10.87 16 23 C -0.13 -1.09 4.96 30.67 0.15 -0.94 16 24 C 0.09 0.87 4.43 86.37 0.38 1.26 16 25 C -0.16 -2.06 9.76 30.60 0.30 -1.76 16 26 C -0.13 -1.12 9.78 30.62 0.30 -0.82 16 27 H 0.10 0.27 7.91 -2.39 -0.02 0.25 16 28 H 0.08 0.54 5.22 -2.39 -0.01 0.53 16 29 H 0.05 0.58 8.14 -2.38 -0.02 0.57 16 30 H 0.06 1.91 7.00 -2.39 -0.02 1.89 16 31 H 0.06 1.55 7.74 -2.39 -0.02 1.53 16 32 H 0.07 2.09 6.20 -2.39 -0.01 2.08 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 1.29 6.17 -2.38 -0.01 1.27 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.41 5.46 7.27 -92.71 -0.67 4.78 16 38 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 39 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 40 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.08 0.60 6.80 -2.39 -0.02 0.59 16 44 H 0.12 0.57 5.02 -2.39 -0.01 0.56 16 45 H 0.08 1.46 7.79 -2.39 -0.02 1.44 16 46 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 47 H 0.14 0.31 8.06 -2.39 -0.02 0.29 16 48 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -80.69 384.49 2.98 -77.70 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.26 Total: 14.11 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 5.83 Total: -4.03 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -3.87 Total: -84.58 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -0.08 Total: -40.51 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.90 Total: 46.96 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.05 Total: -9.64 kcal Total: -80.69 2.98 -77.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073081463.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.173 kcal (2) G-P(sol) polarization free energy of solvation -80.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds