Wall clock time and date at job start Sat Apr 11 2020 06:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.46244 * 126.95965 * 2 1 4 4 C 1.39703 * 134.19352 * 0.02562 * 3 2 1 5 5 C 1.36627 * 119.71102 * 179.97438 * 4 3 2 6 6 C 1.38839 * 120.44179 * 0.03054 * 5 4 3 7 7 C 1.37797 * 120.74719 * 359.97438 * 6 5 4 8 8 C 1.39029 * 119.85260 * 359.97438 * 7 6 5 9 9 O 1.34713 * 133.24018 * 180.34047 * 8 7 6 10 10 C 1.34948 * 110.86552 * 180.12926 * 9 8 7 11 11 C 1.46974 * 125.13394 * 179.81160 * 10 9 8 12 12 O 1.21652 * 119.99998 * 179.69437 * 11 10 9 13 13 N 1.34774 * 120.00208 * 359.69697 * 11 10 9 14 14 C 1.47889 * 134.34502 * 179.97438 * 13 11 10 15 15 C 1.52374 * 85.59061 * 156.55754 * 14 13 11 16 16 C 1.47894 * 134.33987 * 0.06254 * 13 11 10 17 17 C 1.53656 * 116.38986 * 141.35925 * 15 14 13 18 18 C 1.54597 * 102.73161 * 95.48609 * 17 15 14 19 19 N 1.47136 * 107.36670 * 20.75459 * 18 17 15 20 20 C 1.36938 * 125.58996 * 180.66450 * 19 18 17 21 21 H 1.08002 * 119.99889 * 180.02562 * 20 19 18 22 22 C 1.38811 * 120.00054 * 0.02562 * 20 19 18 23 23 N 1.31624 * 119.99551 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00171 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47171 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.46953 * 120.00353 * 24 22 20 27 27 H 1.48502 * 109.46971 * 240.00169 * 24 22 20 28 28 C 1.47729 * 108.82430 * 0.92790 * 19 18 17 29 29 H 1.09002 * 109.47282 * 269.98036 * 1 2 3 30 30 H 1.08999 * 109.47201 * 29.97921 * 1 2 3 31 31 H 1.09003 * 109.47081 * 149.97904 * 1 2 3 32 32 H 1.07997 * 120.14359 * 359.97438 * 4 3 2 33 33 H 1.07996 * 119.77788 * 180.02562 * 5 4 3 34 34 H 1.07999 * 119.62346 * 180.02562 * 6 5 4 35 35 H 1.07990 * 120.07149 * 179.97438 * 7 6 5 36 36 H 1.09000 * 113.85076 * 42.39173 * 14 13 11 37 37 H 1.09001 * 113.85367 * 270.72416 * 14 13 11 38 38 H 1.08995 * 113.85635 * 89.27448 * 16 13 11 39 39 H 1.09003 * 113.85124 * 317.60763 * 16 13 11 40 40 H 1.08999 * 110.75504 * 337.17811 * 17 15 14 41 41 H 1.08994 * 110.91686 * 213.87072 * 17 15 14 42 42 H 1.09005 * 109.86535 * 261.31083 * 18 17 15 43 43 H 1.08999 * 109.98373 * 140.26332 * 18 17 15 44 44 H 0.97006 * 119.99721 * 180.02562 * 23 22 20 45 45 H 1.09007 * 110.39933 * 96.33789 * 28 19 18 46 46 H 1.08995 * 110.40116 * 218.74649 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3863 1.1686 0.0000 4 6 2.1714 2.5490 0.0004 5 6 3.2398 3.4006 0.0008 6 6 4.5360 2.9030 0.0001 7 6 4.7693 1.5450 -0.0004 8 6 3.6980 0.6588 0.0003 9 8 3.6125 -0.6856 0.0058 10 6 2.3235 -1.0853 0.0009 11 6 1.8716 -2.4838 0.0008 12 8 0.6821 -2.7386 0.0018 13 7 2.7750 -3.4839 -0.0002 14 6 2.6830 -4.9600 -0.0001 15 6 4.0807 -4.9297 -0.6061 16 6 4.2528 -3.5420 -0.0003 17 6 5.0584 -6.0120 -0.1225 18 6 4.9183 -7.1062 -1.2056 19 7 4.3605 -6.4660 -2.4071 20 6 4.0728 -7.0991 -3.5868 21 1 3.6643 -6.5387 -4.4148 22 6 4.3061 -8.4611 -3.7184 23 7 4.8035 -9.1441 -2.7091 24 14 3.9130 -9.3249 -5.3274 25 1 3.3663 -8.3415 -6.2965 26 1 5.1515 -9.9294 -5.8801 27 1 2.9078 -10.3907 -5.0842 28 6 4.1677 -5.0269 -2.1345 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.1652 2.9412 0.0005 33 1 3.0750 4.4679 0.0016 34 1 5.3708 3.5882 0.0009 35 1 5.7819 1.1699 -0.0014 36 1 1.9200 -5.3541 -0.6713 37 1 2.6442 -5.3991 0.9968 38 1 4.6938 -3.5478 0.9965 39 1 4.7221 -2.8229 -0.6717 40 1 4.7596 -6.3941 0.8536 41 1 6.0782 -5.6287 -0.0901 42 1 4.2448 -7.8890 -0.8564 43 1 5.8954 -7.5326 -1.4328 44 1 4.9669 -10.0958 -2.8012 45 1 5.0176 -4.4530 -2.5041 46 1 3.2428 -4.6744 -2.5909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073406196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:21 Heat of formation + Delta-G solvation = 63.525898 kcal Electronic energy + Delta-G solvation = -29177.634020 eV Core-core repulsion = 25228.902276 eV Total energy + Delta-G solvation = -3948.731744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.71546 -40.50547 -38.47288 -37.99721 -35.68040 -34.06273 -32.27908 -30.88754 -30.42220 -29.64498 -28.64230 -27.51174 -26.29994 -25.81794 -24.14063 -23.31957 -22.84695 -20.63606 -20.29532 -19.80111 -18.33395 -17.85004 -17.21180 -16.89974 -16.59192 -16.40184 -15.95814 -15.24336 -15.03790 -14.70863 -14.45196 -14.21487 -13.88142 -13.72581 -13.66895 -13.25800 -13.06174 -12.93750 -12.56439 -12.53818 -12.48509 -12.27638 -12.03487 -11.87311 -11.78701 -11.24225 -11.10087 -10.93428 -10.77479 -10.48081 -10.35298 -10.14619 -10.06391 -9.88182 -9.71076 -9.65541 -8.95599 -8.73138 -8.60728 -8.33094 -6.84910 -5.72298 -3.05664 0.34879 1.04437 1.62916 2.28616 2.81133 3.10429 3.38575 3.40130 3.46179 3.48285 4.03997 4.28122 4.45955 4.53096 4.60781 4.66811 4.74612 4.91979 4.98210 5.05843 5.13759 5.17384 5.35175 5.46368 5.49611 5.53509 5.55929 5.65011 5.67938 5.71725 5.75590 5.85686 5.92574 5.94671 6.01528 6.10243 6.15026 6.19955 6.21413 6.29981 6.45451 6.49073 6.65278 6.69610 6.83371 7.55010 7.59155 7.63484 7.81790 8.01006 8.24133 9.21250 9.80745 10.45935 11.39447 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018271 B = 0.002514 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.148321 B =11134.575352 C =11378.906126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.089 4.089 3 C -0.140 4.140 4 C -0.060 4.060 5 C -0.141 4.141 6 C -0.086 4.086 7 C -0.110 4.110 8 C 0.070 3.930 9 O -0.178 6.178 10 C -0.020 4.020 11 C 0.615 3.385 12 O -0.520 6.520 13 N -0.629 5.629 14 C 0.133 3.867 15 C -0.105 4.105 16 C 0.118 3.882 17 C -0.130 4.130 18 C 0.178 3.822 19 N -0.605 5.605 20 C -0.226 4.226 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.922 5.922 24 Si 0.911 3.089 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.162 3.838 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.045 0.955 44 H 0.251 0.749 45 H 0.025 0.975 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.142 23.340 9.847 25.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.141 4.141 4 C -0.078 4.078 5 C -0.159 4.159 6 C -0.104 4.104 7 C -0.128 4.128 8 C 0.021 3.979 9 O -0.079 6.079 10 C -0.070 4.070 11 C 0.403 3.597 12 O -0.399 6.399 13 N -0.362 5.362 14 C 0.013 3.987 15 C -0.107 4.107 16 C -0.004 4.004 17 C -0.169 4.169 18 C 0.053 3.947 19 N -0.331 5.331 20 C -0.354 4.354 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.570 5.570 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.217 1.217 28 C 0.036 3.964 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.043 0.957 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.685 22.919 9.745 24.962 hybrid contribution -0.066 -0.361 -0.764 0.848 sum -1.751 22.558 8.981 24.343 Atomic orbital electron populations 1.20428 0.87479 1.03905 1.03008 1.21374 0.97020 0.89431 1.01341 1.19820 0.92417 0.94306 1.07564 1.20345 0.99776 0.90254 0.97424 1.20784 0.92256 1.00008 1.02899 1.20999 0.97508 0.93744 0.98176 1.20016 0.96855 0.91169 1.04784 1.19776 0.95525 0.81351 1.01238 1.84097 1.27102 1.20591 1.76131 1.21806 0.80987 0.94619 1.09565 1.16252 0.84922 0.81003 0.77487 1.90840 1.14870 1.82119 1.52036 1.50149 1.07993 1.07257 1.70823 1.23063 0.97833 0.76902 1.00952 1.22490 0.95256 0.94042 0.98895 1.23173 0.79276 0.96913 1.01062 1.22668 0.97548 0.96740 0.99975 1.21218 0.98753 0.91121 0.83575 1.44563 1.74970 1.01818 1.11759 1.19091 1.35850 0.91153 0.89353 0.90441 1.24789 1.01343 0.96385 0.97908 1.69969 1.50031 1.07313 1.29657 0.86046 0.77497 0.79543 0.82705 1.20522 1.21768 1.21747 1.21042 0.98202 0.88032 0.89173 0.90602 0.91398 0.88924 0.85345 0.85192 0.84605 0.84666 0.89089 0.89393 0.89321 0.89561 0.91665 0.91615 0.93459 0.93695 0.93811 0.95738 0.94172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 9.81 36.01 0.35 -0.68 16 2 C -0.09 -1.17 6.39 -102.28 -0.65 -1.83 16 3 C -0.14 -1.67 6.37 -105.19 -0.67 -2.34 16 4 C -0.06 -0.54 10.06 -39.62 -0.40 -0.94 16 5 C -0.14 -1.04 9.98 -39.94 -0.40 -1.44 16 6 C -0.09 -0.63 10.01 -39.52 -0.40 -1.03 16 7 C -0.11 -1.02 10.07 -39.45 -0.40 -1.42 16 8 C 0.07 0.85 7.41 -38.35 -0.28 0.57 16 9 O -0.18 -2.47 9.00 2.78 0.02 -2.44 16 10 C -0.02 -0.30 7.02 -36.91 -0.26 -0.56 16 11 C 0.61 10.12 8.03 -12.72 -0.10 10.02 16 12 O -0.52 -9.60 15.34 5.23 0.08 -9.52 16 13 N -0.63 -9.80 3.62 -188.34 -0.68 -10.48 16 14 C 0.13 2.13 8.14 -3.60 -0.03 2.10 16 15 C -0.11 -1.72 0.99 -154.84 -0.15 -1.87 16 16 C 0.12 1.61 7.24 -3.59 -0.03 1.58 16 17 C -0.13 -2.20 6.36 -25.55 -0.16 -2.36 16 18 C 0.18 4.11 5.39 -2.86 -0.02 4.10 16 19 N -0.60 -15.06 3.41 -170.50 -0.58 -15.64 16 20 C -0.23 -6.26 10.28 -15.06 -0.15 -6.41 16 21 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 22 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 23 N -0.92 -26.71 10.30 55.49 0.57 -26.13 16 24 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 28 C 0.16 3.28 6.63 -3.16 -0.02 3.26 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.21 6.38 -51.93 -0.33 0.88 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 34 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.09 1.64 8.12 -51.93 -0.42 1.21 16 37 H 0.09 1.23 8.04 -51.93 -0.42 0.82 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.09 1.15 7.53 -51.93 -0.39 0.76 16 40 H 0.06 0.97 7.99 -51.93 -0.41 0.55 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 1.21 7.40 -51.93 -0.38 0.83 16 43 H 0.04 1.16 7.47 -51.93 -0.39 0.77 16 44 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.03 0.50 8.14 -51.92 -0.42 0.07 16 46 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -32.42 378.27 -10.29 -42.71 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.52 Total: -1.73 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -3.86 Total: 0.43 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.69 Total: -52.25 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.11 Total: -11.96 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.42 -10.29 -42.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073406196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.235 kcal (2) G-P(sol) polarization free energy of solvation -32.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds