Wall clock time and date at job start Sat Apr 11 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33799 * 125.07576 * 2 1 4 4 C 1.34914 * 111.34868 * 179.97438 * 3 2 1 5 5 C 1.38966 * 133.11564 * 180.02562 * 4 3 2 6 6 C 1.37843 * 119.97211 * 179.97438 * 5 4 3 7 7 C 1.38678 * 120.65388 * 359.97438 * 6 5 4 8 8 C 1.37838 * 120.20365 * 359.97438 * 7 6 5 9 9 C 1.39111 * 119.62776 * 0.03829 * 8 7 6 10 10 C 1.36052 * 125.06867 * 179.97438 * 2 1 3 11 11 C 1.47080 * 127.14421 * 0.03551 * 10 2 1 12 12 O 1.21653 * 119.99840 * 270.00139 * 11 10 2 13 13 N 1.34775 * 120.00171 * 89.99987 * 11 10 2 14 14 C 1.47393 * 125.58795 * 0.02562 * 13 11 10 15 15 C 1.54849 * 104.81382 * 204.60648 * 14 13 11 16 16 C 1.55124 * 101.77734 * 322.81872 * 15 14 13 17 17 H 1.09000 * 113.46272 * 159.23849 * 16 15 14 18 18 C 1.54045 * 108.25820 * 286.09018 * 16 15 14 19 19 N 1.46703 * 106.83077 * 135.80892 * 18 16 15 20 20 C 1.36929 * 125.32464 * 161.80150 * 19 18 16 21 21 H 1.08003 * 119.99995 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00137 * 179.97438 * 20 19 18 23 23 N 1.31616 * 120.00356 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99833 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47438 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46727 * 120.00216 * 24 22 20 27 27 H 1.48501 * 109.47366 * 239.99646 * 24 22 20 28 28 C 1.46637 * 109.35150 * 341.81512 * 19 18 16 29 29 C 1.46729 * 125.58836 * 179.71817 * 13 11 10 30 30 H 1.09004 * 111.32926 * 56.12785 * 29 13 11 31 31 H 1.09001 * 109.46859 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47585 * 120.02517 * 1 2 3 33 33 H 1.09000 * 109.47533 * 240.02585 * 1 2 3 34 34 H 1.08006 * 120.01599 * 359.97438 * 5 4 3 35 35 H 1.08001 * 119.67002 * 179.97438 * 6 5 4 36 36 H 1.08002 * 119.89997 * 179.97438 * 7 6 5 37 37 H 1.08007 * 120.18750 * 180.02562 * 8 7 6 38 38 H 1.08995 * 110.37441 * 323.44475 * 14 13 11 39 39 H 1.09009 * 110.37182 * 85.66808 * 14 13 11 40 40 H 1.09007 * 110.96481 * 80.93742 * 15 14 13 41 41 H 1.09000 * 110.97317 * 204.66226 * 15 14 13 42 42 H 1.09003 * 109.98536 * 255.14770 * 18 16 15 43 43 H 1.08997 * 109.98999 * 16.45762 * 18 16 15 44 44 H 0.96993 * 120.00329 * 180.02562 * 23 22 20 45 45 H 1.09003 * 109.75289 * 120.93630 * 28 19 18 46 46 H 1.08997 * 109.75584 * 241.62820 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2759 1.0950 0.0000 4 6 3.5865 0.7749 0.0006 5 6 4.7499 1.5349 0.0012 6 6 5.9795 0.9119 0.0023 7 6 6.0710 -0.4719 0.0031 8 6 4.9281 -1.2424 0.0035 9 6 3.6819 -0.6242 0.0022 10 6 2.2887 -1.1135 0.0005 11 6 1.8394 -2.5140 0.0004 12 8 1.6531 -3.0931 1.0539 13 7 1.6341 -3.1558 -1.1668 14 6 1.8214 -2.5761 -2.5089 15 6 0.8996 -3.4098 -3.4325 16 6 1.0497 -4.8314 -2.8299 17 1 0.2307 -5.5018 -3.0903 18 6 2.4362 -5.3773 -3.2207 19 7 3.0036 -5.9960 -2.0176 20 6 4.0387 -6.8922 -2.0013 21 1 4.5043 -7.1964 -2.9271 22 6 4.4896 -7.4099 -0.7948 23 7 3.9219 -7.0397 0.3334 24 14 5.9012 -8.6332 -0.7727 25 1 6.3614 -8.8833 -2.1622 26 1 7.0231 -8.0799 0.0277 27 1 5.4419 -9.9083 -0.1658 28 6 2.2887 -5.5047 -0.8353 29 6 1.1937 -4.5481 -1.3098 30 1 0.2553 -4.7232 -0.7835 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3634 -0.5142 -0.8897 33 1 -0.3634 -0.5134 0.8902 34 1 4.6907 2.6133 0.0010 35 1 6.8805 1.5074 0.0024 36 1 7.0408 -0.9473 0.0035 37 1 4.9997 -2.3201 0.0046 38 1 1.5186 -1.5291 -2.5157 39 1 2.8613 -2.6716 -2.8218 40 1 -0.1326 -3.0655 -3.3670 41 1 1.2529 -3.3833 -4.4633 42 1 2.3344 -6.1221 -4.0100 43 1 3.0762 -4.5619 -3.5577 44 1 4.2372 -7.4012 1.1765 45 1 1.8422 -6.3429 -0.3001 46 1 2.9805 -4.9758 -0.1798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075829682.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:32 Heat of formation + Delta-G solvation = 35.738749 kcal Electronic energy + Delta-G solvation = -30557.719956 eV Core-core repulsion = 26607.783271 eV Total energy + Delta-G solvation = -3949.936685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.59356 -40.07589 -37.92206 -37.70707 -34.77549 -33.37522 -32.03546 -31.33639 -30.87055 -30.40147 -28.87453 -27.32855 -26.30645 -24.69525 -23.66924 -23.03417 -21.90371 -21.53828 -20.48312 -19.59787 -18.64482 -17.53083 -16.99397 -16.72961 -16.54172 -16.10950 -15.59044 -15.21048 -14.90561 -14.41703 -14.11490 -13.89395 -13.78236 -13.71968 -13.37242 -13.27803 -13.10793 -12.85285 -12.59506 -12.45337 -12.22662 -12.10192 -11.89116 -11.72118 -11.53030 -11.10272 -11.01586 -10.94697 -10.74129 -10.51204 -10.24165 -10.16058 -10.01237 -9.85633 -9.68218 -9.53562 -8.66211 -8.57155 -8.18364 -8.12182 -6.78734 -5.65270 -3.01338 0.82496 1.30536 2.06906 2.50786 2.86021 3.39183 3.41905 3.46691 3.49938 3.69875 4.28023 4.49739 4.52753 4.78130 4.79892 4.88789 4.99680 5.05392 5.12086 5.16225 5.25221 5.27746 5.37295 5.50388 5.50632 5.52614 5.58032 5.63347 5.75664 5.79434 5.84676 5.87780 6.02176 6.13296 6.17780 6.23786 6.32480 6.36543 6.45991 6.49195 6.58141 6.60910 6.64784 6.87881 7.07503 7.57428 7.68162 7.89748 7.96096 8.31610 8.55410 9.26083 9.87181 10.50633 11.44632 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011234 B = 0.004316 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.853946 B = 6486.199369 C = 7860.841560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.071 3.929 3 O -0.186 6.186 4 C 0.049 3.951 5 C -0.109 4.109 6 C -0.095 4.095 7 C -0.131 4.131 8 C -0.062 4.062 9 C -0.096 4.096 10 C -0.205 4.205 11 C 0.603 3.397 12 O -0.519 6.519 13 N -0.593 5.593 14 C 0.105 3.895 15 C -0.124 4.124 16 C -0.110 4.110 17 H 0.099 0.901 18 C 0.142 3.858 19 N -0.602 5.602 20 C -0.233 4.233 21 H 0.078 0.922 22 C -0.005 4.005 23 N -0.915 5.915 24 Si 0.909 3.091 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.175 3.825 29 C 0.116 3.884 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.034 0.966 43 H 0.018 0.982 44 H 0.252 0.748 45 H 0.053 0.947 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.014 18.167 -5.393 19.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.021 3.979 3 O -0.088 6.088 4 C 0.002 3.998 5 C -0.128 4.128 6 C -0.113 4.113 7 C -0.149 4.149 8 C -0.080 4.080 9 C -0.097 4.097 10 C -0.210 4.210 11 C 0.390 3.610 12 O -0.395 6.395 13 N -0.327 5.327 14 C -0.019 4.019 15 C -0.162 4.162 16 C -0.130 4.130 17 H 0.117 0.883 18 C 0.015 3.985 19 N -0.329 5.329 20 C -0.361 4.361 21 H 0.096 0.904 22 C -0.202 4.202 23 N -0.562 5.562 24 Si 0.740 3.260 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.217 1.217 28 C 0.050 3.950 29 C 0.012 3.988 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.149 0.851 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.053 0.947 43 H 0.035 0.965 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.072 18.032 -4.582 19.284 hybrid contribution 0.971 -0.772 0.092 1.244 sum -4.102 17.259 -4.490 18.299 Atomic orbital electron populations 1.20532 0.84060 1.04548 1.04717 1.22442 0.93695 0.82537 0.99203 1.83754 1.15260 1.33606 1.76131 1.19490 0.82812 0.93221 1.04252 1.19868 0.88024 0.99433 1.05458 1.20909 0.96286 0.94741 0.99352 1.21084 0.98474 0.93587 1.01740 1.20729 0.89957 1.01003 0.96293 1.19475 0.92709 0.92479 1.05022 1.20657 0.92320 0.94033 1.13952 1.16646 0.77566 0.83996 0.82840 1.90864 1.50999 1.67200 1.30453 1.48320 1.66185 1.13175 1.04974 1.22259 1.00283 0.96870 0.82448 1.22754 0.99343 0.95160 0.98930 1.23157 0.99812 0.95902 0.94094 0.88273 1.21304 0.90489 0.95383 0.91279 1.44226 1.38289 1.50206 1.00155 1.19047 1.07482 1.16472 0.93111 0.90416 1.24827 0.99688 1.00311 0.95406 1.69999 1.42865 1.46396 0.96934 0.86089 0.81823 0.80813 0.77287 1.20534 1.21798 1.21724 1.21134 0.90876 0.93892 0.89095 1.22535 0.99155 0.81161 0.95908 0.90263 0.89747 0.88935 0.88633 0.85120 0.84750 0.85015 0.84841 0.91541 0.91162 0.91039 0.89924 0.94735 0.96458 0.93693 0.92879 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.11 36.01 0.36 -0.43 16 2 C 0.07 0.97 7.30 -35.09 -0.26 0.72 16 3 O -0.19 -2.59 10.53 5.34 0.06 -2.53 16 4 C 0.05 0.70 7.39 -38.57 -0.28 0.42 16 5 C -0.11 -1.26 10.06 -39.46 -0.40 -1.66 16 6 C -0.09 -1.02 10.01 -39.56 -0.40 -1.42 16 7 C -0.13 -1.68 10.04 -39.57 -0.40 -2.08 16 8 C -0.06 -1.00 10.09 -39.40 -0.40 -1.40 16 9 C -0.10 -1.58 6.39 -104.98 -0.67 -2.26 16 10 C -0.21 -3.47 4.94 -103.25 -0.51 -3.98 16 11 C 0.60 11.88 6.99 -12.68 -0.09 11.79 16 12 O -0.52 -12.39 16.99 5.23 0.09 -12.31 16 13 N -0.59 -10.73 2.99 -164.11 -0.49 -11.22 16 14 C 0.10 1.52 6.20 -2.58 -0.02 1.50 16 15 C -0.12 -1.53 6.35 -24.63 -0.16 -1.69 16 16 C -0.11 -1.79 4.35 -87.73 -0.38 -2.17 16 17 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 18 C 0.14 2.84 6.45 -3.39 -0.02 2.81 16 19 N -0.60 -15.47 3.38 -172.36 -0.58 -16.06 16 20 C -0.23 -6.55 10.25 -15.06 -0.15 -6.71 16 21 H 0.08 2.11 7.83 -52.48 -0.41 1.69 16 22 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 23 N -0.91 -27.94 10.24 55.49 0.57 -27.37 16 24 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 C 0.18 4.47 4.91 -4.00 -0.02 4.45 16 29 C 0.12 2.27 3.55 -66.61 -0.24 2.03 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.13 2.45 8.06 -52.48 -0.42 2.03 16 38 H 0.07 0.82 7.67 -51.93 -0.40 0.43 16 39 H 0.07 1.12 7.19 -51.92 -0.37 0.75 16 40 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 41 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.02 0.35 6.52 -51.93 -0.34 0.01 16 44 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.05 1.52 7.33 -51.93 -0.38 1.14 16 46 H 0.05 1.59 6.66 -51.93 -0.35 1.25 16 LS Contribution 374.66 15.07 5.65 5.65 Total: -1.00 -35.31 374.66 -10.31 -45.61 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.45 Total: 1.08 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -4.12 Total: -0.32 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.50 Total: -54.65 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.15 Total: -14.84 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.31 -10.31 -45.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075829682.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.353 kcal (2) G-P(sol) polarization free energy of solvation -35.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds