Wall clock time and date at job start Sat Apr 11 2020 06:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38837 * 119.77487 * 2 1 4 4 C 1.37794 * 120.74299 * 180.02562 * 3 2 1 5 5 C 1.39037 * 119.85375 * 359.97438 * 4 3 2 6 6 O 1.34711 * 133.23788 * 180.34823 * 5 4 3 7 7 C 1.34946 * 110.86102 * 180.02562 * 6 5 4 8 8 C 1.46981 * 125.13435 * 179.85000 * 7 6 5 9 9 O 1.21648 * 120.00230 * 179.69563 * 8 7 6 10 10 N 1.34775 * 119.99488 * 359.69693 * 8 7 6 11 11 C 1.47345 * 125.52931 * 359.97438 * 10 8 7 12 12 C 1.54944 * 104.90494 * 156.75936 * 11 10 8 13 13 C 1.54786 * 101.45422 * 37.25603 * 12 11 10 14 14 H 1.09002 * 112.84422 * 85.50882 * 13 12 11 15 15 C 1.53519 * 109.68772 * 212.19656 * 13 12 11 16 16 N 1.48401 * 106.16286 * 84.43456 * 15 13 12 17 17 C 1.36941 * 125.06989 * 197.28523 * 16 15 13 18 18 H 1.08004 * 120.00140 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99917 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00057 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00094 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47256 * 59.99819 * 21 19 17 23 23 H 1.48500 * 109.47219 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46938 * 299.99868 * 21 19 17 25 25 C 1.46493 * 109.64275 * 17.28456 * 16 15 13 26 26 C 1.47262 * 125.51863 * 180.02562 * 10 8 7 27 27 H 1.08996 * 111.94782 * 56.62225 * 26 10 8 28 28 C 1.35814 * 109.73702 * 359.58686 * 7 6 5 29 29 C 1.40729 * 119.15927 * 359.97438 * 5 4 3 30 30 C 1.36616 * 119.77721 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47154 * 270.01869 * 1 2 3 32 32 H 1.09004 * 109.47300 * 30.02824 * 1 2 3 33 33 H 1.09008 * 109.46754 * 150.02109 * 1 2 3 34 34 H 1.07995 * 119.62732 * 359.97425 * 3 2 1 35 35 H 1.07994 * 120.07678 * 179.97438 * 4 3 2 36 36 H 1.09006 * 110.35309 * 37.90107 * 11 10 8 37 37 H 1.09001 * 110.35738 * 275.61869 * 11 10 8 38 38 H 1.09007 * 111.02731 * 279.21369 * 12 11 10 39 39 H 1.08997 * 111.03197 * 155.30007 * 12 11 10 40 40 H 1.09000 * 109.91991 * 204.18315 * 15 13 12 41 41 H 1.08998 * 109.91819 * 325.48141 * 15 13 12 42 42 H 0.97001 * 120.00480 * 179.97438 * 20 19 17 43 43 H 1.09005 * 109.71207 * 238.32383 * 25 16 15 44 44 H 1.08994 * 109.71370 * 117.77544 * 25 16 15 45 45 H 1.08002 * 126.95905 * 180.21909 * 28 7 6 46 46 H 1.08000 * 120.14911 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.2051 0.0000 4 6 3.5742 1.2284 -0.0005 5 6 4.2866 0.0344 -0.0005 6 8 5.6022 -0.2553 0.0050 7 6 5.8004 -1.5901 0.0015 8 6 7.1136 -2.2503 0.0027 9 8 7.1839 -3.4647 0.0049 10 7 8.2399 -1.5100 0.0013 11 6 8.2968 -0.0377 -0.0018 12 6 9.6868 0.3087 0.5885 13 6 10.5649 -0.8151 -0.0129 14 1 10.9360 -0.5748 -1.0093 15 6 11.6883 -1.1755 0.9694 16 7 11.1060 -2.1529 1.9223 17 6 11.6404 -2.4784 3.1404 18 1 12.5560 -2.0105 3.4709 19 6 11.0053 -3.4098 3.9504 20 7 9.8892 -3.9796 3.5479 21 14 11.7338 -3.8533 5.6123 22 1 11.8126 -2.6360 6.4590 23 1 10.8716 -4.8632 6.2771 24 1 13.0960 -4.4130 5.4220 25 6 9.8749 -2.7144 1.3609 26 6 9.6131 -2.0417 0.0017 27 1 9.7920 -2.7087 -0.8416 28 6 4.6033 -2.2315 0.0027 29 6 3.5826 -1.1841 0.0006 30 6 2.1855 -1.1858 0.0005 31 1 -0.3633 0.0003 1.0276 32 1 -0.3634 0.8897 -0.5143 33 1 -0.3633 -0.8903 -0.5136 34 1 1.6468 2.1347 -0.0004 35 1 4.0996 2.1719 -0.0009 36 1 7.5054 0.3737 0.6249 37 1 8.2116 0.3429 -1.0197 38 1 9.6739 0.2547 1.6772 39 1 10.0217 1.2896 0.2512 40 1 12.5264 -1.6164 0.4297 41 1 12.0151 -0.2832 1.5033 42 1 9.4455 -4.6307 4.1137 43 1 9.0408 -2.5186 2.0349 44 1 9.9906 -3.7893 1.2229 45 1 4.4385 -3.2989 0.0040 46 1 1.6443 -2.1204 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076606644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:42 Heat of formation + Delta-G solvation = 35.601473 kcal Electronic energy + Delta-G solvation = -29539.939854 eV Core-core repulsion = 25589.997216 eV Total energy + Delta-G solvation = -3949.942638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.55929 -40.01380 -38.46249 -37.76203 -34.87485 -32.93191 -32.51203 -32.15861 -30.66921 -29.86367 -28.62852 -27.23522 -26.68509 -24.67470 -23.98995 -22.57957 -21.75533 -21.55489 -20.57042 -19.82940 -19.02381 -17.67310 -17.51512 -16.75953 -16.46004 -15.70916 -15.62087 -15.33522 -14.79671 -14.50757 -14.26114 -14.12047 -13.86696 -13.71698 -13.50643 -13.34090 -13.16588 -12.78878 -12.59536 -12.45744 -12.15989 -12.03657 -11.87636 -11.73616 -11.48372 -11.18088 -11.12834 -10.96715 -10.74812 -10.50841 -10.30277 -10.21712 -10.08589 -9.90665 -9.86471 -9.66696 -8.64064 -8.56619 -8.46071 -8.18401 -6.79572 -5.63951 -3.00493 0.50786 1.13127 1.83520 2.42652 3.18463 3.37776 3.43491 3.47307 3.48179 3.49794 4.23142 4.45905 4.52698 4.55686 4.76350 4.85026 4.86322 5.00857 5.02795 5.14199 5.24079 5.27292 5.31484 5.44341 5.49273 5.56408 5.61545 5.66040 5.68777 5.76691 5.82220 5.90906 5.97095 6.02702 6.05647 6.14666 6.22469 6.29040 6.36783 6.39814 6.56048 6.58291 6.61521 6.83998 6.95433 7.54736 7.62904 7.81645 7.91782 8.29631 8.33479 9.26433 9.86032 10.49583 11.45485 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015538 B = 0.002903 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.590359 B = 9644.360792 C =10416.889529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.109 4.109 3 C -0.088 4.088 4 C -0.105 4.105 5 C 0.058 3.942 6 O -0.179 6.179 7 C -0.004 4.004 8 C 0.605 3.395 9 O -0.502 6.502 10 N -0.594 5.594 11 C 0.101 3.899 12 C -0.121 4.121 13 C -0.111 4.111 14 H 0.089 0.911 15 C 0.142 3.858 16 N -0.604 5.604 17 C -0.234 4.234 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.915 5.915 21 Si 0.912 3.088 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.181 3.819 26 C 0.114 3.886 27 H 0.085 0.915 28 C -0.125 4.125 29 C -0.135 4.135 30 C -0.063 4.063 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.022 0.978 41 H 0.042 0.958 42 H 0.253 0.747 43 H 0.057 0.943 44 H 0.047 0.953 45 H 0.170 0.830 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.449 12.605 -10.925 22.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.109 4.109 3 C -0.106 4.106 4 C -0.123 4.123 5 C 0.010 3.990 6 O -0.081 6.081 7 C -0.054 4.054 8 C 0.392 3.608 9 O -0.379 6.379 10 N -0.327 5.327 11 C -0.022 4.022 12 C -0.159 4.159 13 C -0.130 4.130 14 H 0.107 0.893 15 C 0.016 3.984 16 N -0.331 5.331 17 C -0.362 4.362 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.562 5.562 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.055 3.945 26 C 0.012 3.988 27 H 0.103 0.897 28 C -0.146 4.146 29 C -0.136 4.136 30 C -0.081 4.081 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.040 0.960 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.187 0.813 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.307 11.946 -10.740 22.189 hybrid contribution 0.263 -0.337 0.923 1.017 sum -15.044 11.609 -9.818 21.389 Atomic orbital electron populations 1.20749 0.90613 1.02840 1.02443 1.19507 0.96432 0.92664 1.02327 1.20840 0.92458 0.97999 0.99338 1.19951 0.93070 0.94710 1.04607 1.19826 0.81474 0.95682 1.02020 1.84183 1.23993 1.23888 1.75996 1.22191 0.96032 0.80187 1.06966 1.16247 0.80481 0.85789 0.78311 1.90927 1.85015 1.11628 1.50313 1.48456 1.05791 1.07359 1.71048 1.22438 0.99075 0.79946 1.00714 1.22775 0.92972 0.97949 1.02167 1.22966 0.96319 0.94421 0.99340 0.89322 1.21405 0.93271 0.93256 0.90454 1.44533 1.25242 1.46481 1.16886 1.18968 1.05841 1.19667 0.91717 0.90407 1.24847 0.97448 0.99245 0.98815 1.69981 1.18173 1.31043 1.37004 0.86214 0.78057 0.77818 0.83721 1.21239 1.21635 1.21157 1.21254 0.89764 0.95880 0.87572 1.22994 0.78458 0.95863 1.01519 0.89707 1.22697 0.89101 1.00143 1.02667 1.19911 0.94502 0.92538 1.06599 1.20209 0.91100 0.98323 0.98489 0.91136 0.91469 0.91484 0.84771 0.84787 0.90166 0.91596 0.89434 0.90335 0.96014 0.94007 0.93612 0.92534 0.93534 0.81255 0.85296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.00 36.01 0.36 -0.30 16 2 C -0.11 -0.98 5.85 -104.99 -0.61 -1.60 16 3 C -0.09 -0.76 9.66 -39.52 -0.38 -1.14 16 4 C -0.10 -1.08 10.07 -39.45 -0.40 -1.48 16 5 C 0.06 0.78 7.41 -38.35 -0.28 0.50 16 6 O -0.18 -2.70 7.69 2.79 0.02 -2.67 16 7 C 0.00 -0.06 6.89 -36.91 -0.25 -0.32 16 8 C 0.61 11.89 7.54 -12.72 -0.10 11.79 16 9 O -0.50 -11.48 16.91 5.24 0.09 -11.39 16 10 N -0.59 -10.99 2.83 -163.20 -0.46 -11.45 16 11 C 0.10 1.49 6.10 -2.55 -0.02 1.48 16 12 C -0.12 -1.80 6.31 -24.76 -0.16 -1.95 16 13 C -0.11 -1.83 3.92 -88.21 -0.35 -2.18 16 14 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 15 C 0.14 2.83 6.65 -2.73 -0.02 2.81 16 16 N -0.60 -15.50 3.42 -170.82 -0.58 -16.09 16 17 C -0.23 -6.57 10.25 -15.06 -0.15 -6.73 16 18 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 19 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 20 N -0.92 -28.04 10.23 55.49 0.57 -27.47 16 21 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.18 4.61 4.63 -3.58 -0.02 4.60 16 26 C 0.11 2.27 3.82 -65.85 -0.25 2.02 16 27 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 28 C -0.13 -1.89 10.81 -37.23 -0.40 -2.29 16 29 C -0.13 -1.80 6.38 -105.19 -0.67 -2.47 16 30 C -0.06 -0.67 9.68 -39.62 -0.38 -1.06 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 33 H 0.07 0.36 8.08 -51.92 -0.42 -0.06 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.08 1.18 6.22 -51.93 -0.32 0.86 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 1.57 7.94 -51.93 -0.41 1.15 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.04 0.80 7.94 -51.93 -0.41 0.38 16 42 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.06 1.64 6.88 -51.93 -0.36 1.29 16 44 H 0.05 1.37 7.51 -51.93 -0.39 0.98 16 45 H 0.17 2.34 8.06 -52.49 -0.42 1.92 16 46 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 373.27 15.07 5.63 5.63 Total: -1.00 -34.05 373.27 -10.45 -44.50 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -6.51 Total: -0.01 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -4.18 Total: 1.39 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.48 Total: -55.01 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.11 Total: -14.07 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.05 -10.45 -44.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076606644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.102 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds