Wall clock time and date at job start Sat Apr 11 2020 06:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36286 * 119.93628 * 2 1 4 4 C 1.38908 * 121.17634 * 179.77481 * 3 2 1 5 5 C 1.38717 * 120.64769 * 0.48102 * 4 3 2 6 6 C 1.47461 * 120.37554 * 179.80243 * 5 4 3 7 7 O 1.21603 * 119.99683 * 174.02305 * 6 5 4 8 8 N 1.34777 * 120.00201 * 354.01308 * 6 5 4 9 9 C 1.46496 * 120.00173 * 180.02562 * 8 6 5 10 10 H 1.09003 * 110.88178 * 37.43418 * 9 8 6 11 11 C 1.54906 * 111.00754 * 273.55196 * 9 8 6 12 12 N 1.47417 * 104.93031 * 204.86016 * 11 9 8 13 13 C 1.36934 * 125.65218 * 204.15420 * 12 11 9 14 14 H 1.07999 * 120.00103 * 359.97438 * 13 12 11 15 15 C 1.38812 * 120.00515 * 179.97438 * 13 12 11 16 16 N 1.31619 * 119.99704 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00382 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46948 * 89.99889 * 17 15 13 19 19 H 1.48500 * 109.47219 * 210.00009 * 17 15 13 20 20 H 1.48502 * 109.47087 * 329.99949 * 17 15 13 21 21 C 1.47289 * 108.55980 * 24.15498 * 12 11 9 22 22 C 1.54326 * 107.30590 * 358.92569 * 21 12 11 23 23 H 1.08997 * 110.72445 * 96.18018 * 22 21 12 24 24 O 1.42902 * 110.87425 * 219.38455 * 22 21 12 25 25 C 1.41743 * 119.24725 * 359.51583 * 5 4 3 26 26 C 1.40139 * 121.26084 * 180.28107 * 25 5 4 27 27 C 1.36251 * 119.68918 * 179.97438 * 26 25 5 28 28 C 1.39294 * 120.93632 * 0.02562 * 27 26 25 29 29 C 1.36138 * 120.95004 * 359.97438 * 28 27 26 30 30 C 1.40553 * 119.93758 * 180.02562 * 2 1 3 31 31 H 1.09007 * 109.47186 * 269.98279 * 1 2 3 32 32 H 1.08997 * 109.47072 * 29.97894 * 1 2 3 33 33 H 1.08997 * 109.47218 * 149.98191 * 1 2 3 34 34 H 1.08000 * 119.41441 * 0.02562 * 3 2 1 35 35 H 1.08003 * 119.67763 * 180.27587 * 4 3 2 36 36 H 0.96997 * 119.99440 * 0.02562 * 8 6 5 37 37 H 1.09004 * 110.36373 * 323.75413 * 11 9 8 38 38 H 1.09003 * 110.36731 * 85.96236 * 11 9 8 39 39 H 0.97003 * 120.00287 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.86194 * 239.50429 * 21 12 11 41 41 H 1.09000 * 109.88089 * 118.35388 * 21 12 11 42 42 H 0.96696 * 113.99979 * 293.60563 * 24 22 21 43 43 H 1.07997 * 120.15347 * 0.02562 * 26 25 5 44 44 H 1.08002 * 119.53399 * 180.02562 * 27 26 25 45 45 H 1.08002 * 119.53151 * 179.97438 * 28 27 26 46 46 H 1.07998 * 120.17448 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1810 0.0000 4 6 3.5759 1.2111 0.0047 5 6 4.3087 0.0333 -0.0005 6 6 5.7828 0.0722 0.0001 7 8 6.4181 -0.9593 0.1052 8 7 6.4258 1.2510 -0.1160 9 6 7.8903 1.2896 -0.1160 10 1 8.3015 0.4339 -0.6515 11 6 8.4439 1.3587 1.3291 12 7 9.7705 1.9882 1.1979 13 6 10.8102 1.8497 2.0782 14 1 10.6937 1.2361 2.9593 15 6 12.0140 2.4980 1.8382 16 7 12.1558 3.2463 0.7647 17 14 13.4320 2.3097 3.0394 18 1 14.2651 1.1460 2.6432 19 1 14.2618 3.5411 3.0228 20 1 12.8965 2.0922 4.4073 21 6 9.7889 2.7899 -0.0376 22 6 8.4115 2.6234 -0.7134 23 1 7.7501 3.4486 -0.4495 24 8 8.5493 2.5223 -2.1321 25 6 3.6244 -1.2081 -0.0003 26 6 4.3225 -2.4232 0.0004 27 6 3.6323 -3.5980 0.0012 28 6 2.2394 -3.6102 0.0007 29 6 1.5291 -2.4488 0.0000 30 6 2.2084 -1.2180 -0.0005 31 1 -0.3634 -0.0003 1.0277 32 1 -0.3633 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6365 2.1102 0.0004 35 1 4.0902 2.1608 0.0091 36 1 5.9189 2.0737 -0.1996 37 1 7.7942 1.9700 1.9554 38 1 8.5392 0.3566 1.7472 39 1 12.9968 3.6996 0.5971 40 1 10.5737 2.4284 -0.7019 41 1 9.9588 3.8391 0.2039 42 1 8.8722 3.3300 -2.5545 43 1 5.4025 -2.4284 0.0012 44 1 4.1728 -4.5330 0.0022 45 1 1.7153 -4.5545 0.0009 46 1 0.4494 -2.4729 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077743755.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:50 Heat of formation + Delta-G solvation = -3.854622 kcal Electronic energy + Delta-G solvation = -28925.974488 eV Core-core repulsion = 24974.320906 eV Total energy + Delta-G solvation = -3951.653582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.96361 -39.37257 -37.80119 -36.77586 -35.09384 -34.17231 -33.82855 -31.74127 -30.48330 -30.10150 -28.66414 -27.68922 -26.66612 -24.47669 -23.63757 -23.10539 -22.19984 -20.68562 -20.37149 -20.05332 -17.89417 -17.53671 -17.00558 -16.84637 -16.70458 -15.73882 -15.30509 -14.95421 -14.86618 -14.62157 -14.42095 -14.22277 -14.00082 -13.64401 -13.60769 -13.16145 -12.92984 -12.90204 -12.69581 -12.47113 -12.36560 -12.11566 -12.05146 -11.55282 -11.40941 -11.30439 -11.25518 -11.09716 -10.89516 -10.81956 -10.16406 -9.92323 -9.86540 -9.84253 -9.57248 -9.27866 -8.89293 -8.80569 -8.65314 -7.96155 -6.92229 -5.77053 -3.11321 0.11066 0.85550 1.70682 2.60213 3.20646 3.25451 3.39533 3.44563 3.46168 4.02305 4.36846 4.43687 4.48203 4.56882 4.61050 4.73253 4.78201 4.88060 5.05901 5.13539 5.21715 5.24605 5.29110 5.31592 5.42546 5.46225 5.55218 5.63118 5.69320 5.74802 5.79928 5.93104 6.02170 6.04128 6.07397 6.12447 6.17697 6.41101 6.47349 6.55765 6.61212 6.69675 6.85604 6.92902 7.30295 7.44968 7.63008 7.72725 8.08885 8.15988 8.35968 9.14083 9.74351 10.37556 11.35056 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018719 B = 0.002505 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.443468 B =11177.055968 C =11829.310528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.050 4.050 3 C -0.131 4.131 4 C -0.072 4.072 5 C -0.121 4.121 6 C 0.561 3.439 7 O -0.530 6.530 8 N -0.707 5.707 9 C 0.139 3.861 10 H 0.105 0.895 11 C 0.130 3.870 12 N -0.600 5.600 13 C -0.227 4.227 14 H 0.081 0.919 15 C -0.008 4.008 16 N -0.925 5.925 17 Si 0.915 3.085 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.154 3.846 22 C 0.069 3.931 23 H 0.057 0.943 24 O -0.563 6.563 25 C -0.011 4.011 26 C -0.109 4.109 27 C -0.122 4.122 28 C -0.113 4.113 29 C -0.117 4.117 30 C -0.057 4.057 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.396 0.604 37 H 0.023 0.977 38 H 0.052 0.948 39 H 0.253 0.747 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.377 0.623 43 H 0.172 0.828 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.690 -4.548 -4.261 25.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.050 4.050 3 C -0.149 4.149 4 C -0.091 4.091 5 C -0.124 4.124 6 C 0.348 3.652 7 O -0.409 6.409 8 N -0.357 5.357 9 C 0.034 3.966 10 H 0.122 0.878 11 C 0.003 3.997 12 N -0.328 5.328 13 C -0.355 4.355 14 H 0.099 0.901 15 C -0.204 4.204 16 N -0.572 5.572 17 Si 0.746 3.254 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.206 1.206 21 C 0.028 3.972 22 C 0.009 3.991 23 H 0.075 0.925 24 O -0.368 6.368 25 C -0.012 4.012 26 C -0.126 4.126 27 C -0.140 4.140 28 C -0.131 4.131 29 C -0.135 4.135 30 C -0.057 4.057 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.231 0.769 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.224 0.776 43 H 0.189 0.811 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -24.198 -5.790 -4.050 25.208 hybrid contribution 0.718 1.056 0.477 1.363 sum -23.480 -4.734 -3.573 24.217 Atomic orbital electron populations 1.20897 0.90749 1.03221 1.02778 1.19919 0.96115 0.92300 0.96683 1.20604 0.93761 0.97876 1.02611 1.21332 0.94268 0.97259 0.96233 1.19959 0.92896 0.93580 1.05997 1.18061 0.86770 0.83830 0.76501 1.90571 1.67991 1.32221 1.50111 1.45865 1.07698 1.08541 1.73624 1.22294 0.77472 0.98780 0.98036 0.87751 1.21844 0.87956 0.97411 0.92508 1.44300 1.09007 1.55013 1.24442 1.19090 0.89915 1.25196 1.01345 0.90112 1.24815 0.97911 0.99583 0.98097 1.69916 1.25222 1.35101 1.26974 0.86063 0.82125 0.77099 0.80153 1.21467 1.21644 1.20615 1.21860 0.90647 0.96592 0.88100 1.23446 0.99221 0.95454 0.81016 0.92481 1.86470 1.89321 1.41387 1.19595 1.17869 0.91923 0.92927 0.98493 1.22309 1.03830 0.90724 0.95710 1.21054 0.94069 0.98670 1.00181 1.20926 0.94515 0.98137 0.99567 1.20991 0.99629 0.91469 1.01430 1.17906 0.92222 0.93532 1.02055 0.90585 0.91025 0.91023 0.85326 0.85358 0.76860 0.95890 0.92988 0.93647 0.92030 0.93250 0.77620 0.81118 0.85875 0.86120 0.85476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 9.52 36.01 0.34 -0.39 16 2 C -0.05 -0.47 5.89 -104.45 -0.62 -1.09 16 3 C -0.13 -1.19 9.56 -40.04 -0.38 -1.57 16 4 C -0.07 -0.76 9.51 -39.16 -0.37 -1.14 16 5 C -0.12 -1.66 5.90 -104.62 -0.62 -2.28 16 6 C 0.56 9.10 7.72 -12.50 -0.10 9.00 16 7 O -0.53 -10.20 13.13 5.27 0.07 -10.13 16 8 N -0.71 -10.78 5.18 -52.79 -0.27 -11.05 16 9 C 0.14 2.63 3.04 -65.78 -0.20 2.43 16 10 H 0.10 2.25 7.73 -51.93 -0.40 1.85 16 11 C 0.13 2.81 6.92 -2.53 -0.02 2.79 16 12 N -0.60 -15.38 3.40 -169.86 -0.58 -15.96 16 13 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 14 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 15 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 16 N -0.92 -26.78 10.34 55.49 0.57 -26.21 16 17 Si 0.92 22.15 29.55 -169.99 -5.02 17.13 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.15 3.62 5.16 -2.92 -0.02 3.60 16 22 C 0.07 1.25 3.95 -24.89 -0.10 1.15 16 23 H 0.06 0.90 8.00 -51.93 -0.42 0.49 16 24 O -0.56 -9.61 13.40 -35.23 -0.47 -10.08 16 25 C -0.01 -0.16 5.76 -106.56 -0.61 -0.77 16 26 C -0.11 -1.54 9.21 -39.58 -0.36 -1.90 16 27 C -0.12 -1.40 9.95 -39.90 -0.40 -1.80 16 28 C -0.11 -1.11 9.95 -39.94 -0.40 -1.50 16 29 C -0.12 -1.14 9.27 -39.45 -0.37 -1.51 16 30 C -0.06 -0.66 5.74 -106.86 -0.61 -1.27 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.07 0.38 6.39 -51.93 -0.33 0.05 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.13 1.06 6.42 -52.48 -0.34 0.72 16 36 H 0.40 4.79 6.58 -40.82 -0.27 4.52 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.06 1.64 7.31 -51.93 -0.38 1.26 16 41 H 0.05 1.25 7.52 -51.93 -0.39 0.86 16 42 H 0.38 4.84 9.12 45.56 0.42 5.25 16 43 H 0.17 2.75 4.87 -52.60 -0.26 2.50 16 44 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 46 H 0.13 0.88 6.34 -52.49 -0.33 0.55 16 LS Contribution 372.23 15.07 5.61 5.61 Total: -1.00 -33.94 372.23 -10.37 -44.31 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -5.20 Total: 9.48 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -5.08 Total: -3.10 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.28 Total: -53.22 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.40 Total: -20.21 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.94 -10.37 -44.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077743755.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.451 kcal (2) G-P(sol) polarization free energy of solvation -33.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds