Wall clock time and date at job start Sat Apr 11 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36286 * 119.93628 * 2 1 4 4 C 1.38908 * 121.17634 * 179.77481 * 3 2 1 5 5 C 1.38717 * 120.64769 * 0.48102 * 4 3 2 6 6 C 1.47461 * 120.37554 * 179.80243 * 5 4 3 7 7 O 1.21603 * 119.99683 * 174.02305 * 6 5 4 8 8 N 1.34777 * 120.00201 * 354.01308 * 6 5 4 9 9 C 1.46496 * 120.00173 * 180.02562 * 8 6 5 10 10 H 1.09003 * 110.88178 * 37.43418 * 9 8 6 11 11 C 1.54906 * 111.00754 * 273.55196 * 9 8 6 12 12 N 1.47417 * 104.93031 * 204.86016 * 11 9 8 13 13 C 1.36934 * 125.65218 * 204.15420 * 12 11 9 14 14 H 1.07999 * 120.00103 * 359.97438 * 13 12 11 15 15 C 1.38812 * 120.00515 * 179.97438 * 13 12 11 16 16 N 1.31619 * 119.99704 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00382 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46948 * 89.99889 * 17 15 13 19 19 H 1.48500 * 109.47219 * 210.00009 * 17 15 13 20 20 H 1.48502 * 109.47087 * 329.99949 * 17 15 13 21 21 C 1.47289 * 108.55980 * 24.15498 * 12 11 9 22 22 C 1.54326 * 107.30590 * 358.92569 * 21 12 11 23 23 H 1.08997 * 110.72445 * 96.18018 * 22 21 12 24 24 O 1.42902 * 110.87425 * 219.38455 * 22 21 12 25 25 C 1.41743 * 119.24725 * 359.51583 * 5 4 3 26 26 C 1.40139 * 121.26084 * 180.28107 * 25 5 4 27 27 C 1.36251 * 119.68918 * 179.97438 * 26 25 5 28 28 C 1.39294 * 120.93632 * 0.02562 * 27 26 25 29 29 C 1.36138 * 120.95004 * 359.97438 * 28 27 26 30 30 C 1.40553 * 119.93758 * 180.02562 * 2 1 3 31 31 H 1.09007 * 109.47186 * 269.98279 * 1 2 3 32 32 H 1.08997 * 109.47072 * 29.97894 * 1 2 3 33 33 H 1.08997 * 109.47218 * 149.98191 * 1 2 3 34 34 H 1.08000 * 119.41441 * 0.02562 * 3 2 1 35 35 H 1.08003 * 119.67763 * 180.27587 * 4 3 2 36 36 H 0.96997 * 119.99440 * 0.02562 * 8 6 5 37 37 H 1.09004 * 110.36373 * 323.75413 * 11 9 8 38 38 H 1.09003 * 110.36731 * 85.96236 * 11 9 8 39 39 H 0.97003 * 120.00287 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.86194 * 239.50429 * 21 12 11 41 41 H 1.09000 * 109.88089 * 118.35388 * 21 12 11 42 42 H 0.96696 * 113.99979 * 293.60563 * 24 22 21 43 43 H 1.07997 * 120.15347 * 0.02562 * 26 25 5 44 44 H 1.08002 * 119.53399 * 180.02562 * 27 26 25 45 45 H 1.08002 * 119.53151 * 179.97438 * 28 27 26 46 46 H 1.07998 * 120.17448 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1810 0.0000 4 6 3.5759 1.2111 0.0047 5 6 4.3087 0.0333 -0.0005 6 6 5.7828 0.0722 0.0001 7 8 6.4181 -0.9593 0.1052 8 7 6.4258 1.2510 -0.1160 9 6 7.8903 1.2896 -0.1160 10 1 8.3015 0.4339 -0.6515 11 6 8.4439 1.3587 1.3291 12 7 9.7705 1.9882 1.1979 13 6 10.8102 1.8497 2.0782 14 1 10.6937 1.2361 2.9593 15 6 12.0140 2.4980 1.8382 16 7 12.1558 3.2463 0.7647 17 14 13.4320 2.3097 3.0394 18 1 14.2651 1.1460 2.6432 19 1 14.2618 3.5411 3.0228 20 1 12.8965 2.0922 4.4073 21 6 9.7889 2.7899 -0.0376 22 6 8.4115 2.6234 -0.7134 23 1 7.7501 3.4486 -0.4495 24 8 8.5493 2.5223 -2.1321 25 6 3.6244 -1.2081 -0.0003 26 6 4.3225 -2.4232 0.0004 27 6 3.6323 -3.5980 0.0012 28 6 2.2394 -3.6102 0.0007 29 6 1.5291 -2.4488 0.0000 30 6 2.2084 -1.2180 -0.0005 31 1 -0.3634 -0.0003 1.0277 32 1 -0.3633 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6365 2.1102 0.0004 35 1 4.0902 2.1608 0.0091 36 1 5.9189 2.0737 -0.1996 37 1 7.7942 1.9700 1.9554 38 1 8.5392 0.3566 1.7472 39 1 12.9968 3.6996 0.5971 40 1 10.5737 2.4284 -0.7019 41 1 9.9588 3.8391 0.2039 42 1 8.8722 3.3300 -2.5545 43 1 5.4025 -2.4284 0.0012 44 1 4.1728 -4.5330 0.0022 45 1 1.7153 -4.5545 0.0009 46 1 0.4494 -2.4729 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077743755.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:49 Heat of formation + Delta-G solvation = -27.622693 kcal Electronic energy + Delta-G solvation = -28927.005149 eV Core-core repulsion = 24974.320906 eV Total energy + Delta-G solvation = -3952.684243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.91799 -40.63272 -39.30875 -37.57556 -36.70665 -35.66855 -34.71015 -33.62369 -31.30421 -30.98907 -30.24436 -29.08133 -27.95592 -26.30874 -24.48918 -23.93238 -23.32083 -22.37240 -21.89600 -21.26525 -19.22240 -18.77861 -18.29314 -18.16207 -17.74272 -17.28748 -16.56238 -16.27419 -16.09575 -15.83230 -15.75268 -15.38151 -15.06025 -14.88035 -14.51497 -14.38448 -14.32985 -14.17776 -13.86813 -13.69064 -13.53976 -13.18662 -13.18584 -12.95662 -12.81418 -12.76104 -12.75304 -12.25577 -12.12549 -12.10426 -11.90380 -11.84143 -11.56604 -11.04662 -10.80033 -10.69623 -10.59583 -10.26533 -9.62057 -9.00136 -8.79212 -7.91255 -5.28439 -0.74270 0.04607 0.79678 1.44138 1.46649 1.55021 1.71362 1.93733 2.22363 2.45907 3.08748 3.14671 3.29352 3.48863 3.52936 3.75793 3.80974 3.85382 3.90853 4.00874 4.06780 4.13428 4.15912 4.38706 4.39775 4.40192 4.52107 4.56995 4.67458 4.71835 4.79136 4.87805 4.92297 4.99371 5.12115 5.19568 5.25584 5.29836 5.33964 5.37532 5.41433 5.46088 5.63241 5.65200 5.67730 5.86986 6.06994 6.10638 6.45313 6.84910 7.02002 7.15889 7.65938 8.29004 9.18804 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018719 B = 0.002505 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.443468 B =11177.055968 C =11829.310528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.037 4.037 3 C -0.140 4.140 4 C -0.053 4.053 5 C -0.162 4.162 6 C 0.557 3.443 7 O -0.572 6.572 8 N -0.694 5.694 9 C 0.155 3.845 10 H 0.070 0.930 11 C 0.132 3.868 12 N -0.622 5.622 13 C -0.249 4.249 14 H 0.080 0.920 15 C -0.061 4.061 16 N -0.948 5.948 17 Si 0.981 3.019 18 H -0.288 1.288 19 H -0.288 1.288 20 H -0.269 1.269 21 C 0.161 3.839 22 C 0.093 3.907 23 H 0.098 0.902 24 O -0.569 6.569 25 C -0.031 4.031 26 C -0.152 4.152 27 C -0.118 4.118 28 C -0.123 4.123 29 C -0.105 4.105 30 C -0.080 4.080 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.165 0.835 35 H 0.152 0.848 36 H 0.415 0.585 37 H 0.041 0.959 38 H 0.031 0.969 39 H 0.250 0.750 40 H 0.021 0.979 41 H 0.030 0.970 42 H 0.397 0.603 43 H 0.139 0.861 44 H 0.133 0.867 45 H 0.153 0.847 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.860 -3.545 -4.143 29.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.037 4.037 3 C -0.157 4.157 4 C -0.072 4.072 5 C -0.165 4.165 6 C 0.347 3.653 7 O -0.454 6.454 8 N -0.346 5.346 9 C 0.048 3.952 10 H 0.088 0.912 11 C 0.005 3.995 12 N -0.349 5.349 13 C -0.377 4.377 14 H 0.097 0.903 15 C -0.254 4.254 16 N -0.596 5.596 17 Si 0.809 3.191 18 H -0.215 1.215 19 H -0.214 1.214 20 H -0.194 1.194 21 C 0.036 3.964 22 C 0.033 3.967 23 H 0.115 0.885 24 O -0.376 6.376 25 C -0.031 4.031 26 C -0.170 4.170 27 C -0.136 4.136 28 C -0.141 4.141 29 C -0.123 4.123 30 C -0.080 4.080 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.183 0.817 35 H 0.170 0.830 36 H 0.253 0.747 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.040 0.960 41 H 0.048 0.952 42 H 0.248 0.752 43 H 0.156 0.844 44 H 0.151 0.849 45 H 0.171 0.829 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -28.415 -4.761 -3.946 29.080 hybrid contribution 1.885 0.690 0.418 2.050 sum -26.531 -4.071 -3.528 27.072 Atomic orbital electron populations 1.21026 0.87806 1.04784 1.04038 1.20416 0.98140 0.91461 0.93722 1.21024 0.93080 0.99401 1.02208 1.21690 0.95280 0.96908 0.93299 1.19770 0.90993 0.95098 1.10627 1.18624 0.88185 0.83172 0.75313 1.90574 1.69223 1.33687 1.51879 1.45582 1.05904 1.09422 1.73685 1.21748 0.79661 0.98005 0.95781 0.91151 1.21899 0.86841 0.96172 0.94548 1.44568 1.09937 1.55699 1.24739 1.19427 0.91132 1.25221 1.01950 0.90250 1.25654 1.00260 0.99551 0.99935 1.70116 1.25471 1.35680 1.28338 0.85046 0.78784 0.76766 0.78519 1.21487 1.21409 1.19399 1.21676 0.92925 0.94748 0.87095 1.23130 0.96397 0.95977 0.81244 0.88465 1.86440 1.89302 1.43265 1.18630 1.18094 0.93421 0.92677 0.98954 1.22118 1.02659 0.92576 0.99637 1.21295 0.95479 0.98148 0.98684 1.21254 0.93513 0.99885 0.99462 1.21450 1.01333 0.90581 0.98906 1.18235 0.91284 0.95488 1.02958 0.89195 0.89106 0.89944 0.81713 0.83034 0.74667 0.94112 0.95063 0.94050 0.96032 0.95234 0.75230 0.84372 0.84879 0.82904 0.81916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.52 71.24 0.68 -0.17 16 2 C -0.04 -0.57 5.89 -19.75 -0.12 -0.68 16 3 C -0.14 -2.01 9.56 21.98 0.21 -1.80 16 4 C -0.05 -1.01 9.51 22.55 0.21 -0.79 16 5 C -0.16 -4.49 5.90 -19.87 -0.12 -4.60 16 6 C 0.56 18.98 7.72 86.67 0.67 19.65 16 7 O -0.57 -24.14 13.13 -4.04 -0.05 -24.20 16 8 N -0.69 -21.21 5.18 -439.18 -2.27 -23.49 16 9 C 0.15 6.01 3.04 46.38 0.14 6.15 16 10 H 0.07 3.24 7.73 -2.39 -0.02 3.22 16 11 C 0.13 5.90 6.92 86.86 0.60 6.50 16 12 N -0.62 -33.07 3.40 -691.33 -2.35 -35.42 16 13 C -0.25 -14.41 10.28 84.03 0.86 -13.55 16 14 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 15 C -0.06 -3.49 5.49 84.86 0.47 -3.03 16 16 N -0.95 -56.61 10.34 21.65 0.22 -56.39 16 17 Si 0.98 46.43 29.55 68.60 2.03 48.46 16 18 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 19 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 21 C 0.16 7.86 5.16 86.68 0.45 8.30 16 22 C 0.09 3.35 3.95 31.78 0.13 3.47 16 23 H 0.10 2.81 8.00 -2.39 -0.02 2.79 16 24 O -0.57 -19.02 13.40 -148.98 -2.00 -21.02 16 25 C -0.03 -0.87 5.76 -21.12 -0.12 -0.99 16 26 C -0.15 -4.67 9.21 22.27 0.21 -4.47 16 27 C -0.12 -2.80 9.95 22.06 0.22 -2.58 16 28 C -0.12 -2.18 9.95 22.03 0.22 -1.96 16 29 C -0.11 -1.75 9.27 22.35 0.21 -1.54 16 30 C -0.08 -1.69 5.74 -21.31 -0.12 -1.81 16 31 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.09 0.36 8.08 -2.39 -0.02 0.34 16 33 H 0.08 0.44 6.39 -2.39 -0.02 0.42 16 34 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 35 H 0.15 2.01 6.42 -2.91 -0.02 1.99 16 36 H 0.41 9.26 6.58 -92.71 -0.61 8.66 16 37 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.02 1.20 7.31 -2.39 -0.02 1.19 16 41 H 0.03 1.54 7.52 -2.39 -0.02 1.52 16 42 H 0.40 9.67 9.12 -74.06 -0.68 9.00 16 43 H 0.14 5.10 4.87 -4.68 -0.02 5.08 16 44 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 45 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 46 H 0.16 1.45 6.34 -2.91 -0.02 1.44 16 Total: -1.00 -80.24 372.23 0.11 -80.13 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: -0.25 Total: 25.83 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 4.79 Total: 6.09 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -4.40 Total: -115.29 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -2.05 Total: -45.21 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -80.24 0.11 -80.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077743755.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.504 kcal (2) G-P(sol) polarization free energy of solvation -80.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds