Wall clock time and date at job start Sat Apr 11 2020 06:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.40371 * 126.64647 * 2 1 4 4 C 1.35136 * 107.11041 * 180.22137 * 3 2 1 5 5 O 1.33926 * 108.77089 * 359.78312 * 4 3 2 6 6 C 1.34915 * 109.38453 * 359.97438 * 5 4 3 7 7 C 1.46659 * 125.98987 * 179.97438 * 6 5 4 8 8 O 1.21689 * 120.00019 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99573 * 0.02562 * 7 6 5 10 10 C 1.47431 * 125.64579 * 180.02562 * 9 7 6 11 11 C 1.55392 * 104.87127 * 204.10006 * 10 9 7 12 12 H 1.09001 * 111.02055 * 80.98222 * 11 10 9 13 13 C 1.50699 * 111.18654 * 204.97965 * 11 10 9 14 14 C 1.38236 * 119.99819 * 51.76296 * 13 11 10 15 15 C 1.38235 * 119.99730 * 179.81162 * 14 13 11 16 16 C 1.38241 * 120.00077 * 0.39927 * 15 14 13 17 17 C 1.38227 * 119.99789 * 359.85544 * 16 15 14 18 18 C 1.38233 * 120.00097 * 232.04041 * 13 11 10 19 19 C 1.55157 * 101.36576 * 323.01456 * 11 10 9 20 20 H 1.09002 * 110.72219 * 277.04408 * 19 11 10 21 21 N 1.46505 * 110.71610 * 153.94856 * 19 11 10 22 22 C 1.36938 * 119.99525 * 157.44128 * 21 19 11 23 23 H 1.08006 * 120.00198 * 0.02562 * 22 21 19 24 24 C 1.38814 * 119.99618 * 179.97438 * 22 21 19 25 25 N 1.31611 * 120.00172 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99664 * 180.02562 * 24 22 21 27 27 H 1.48508 * 109.47451 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47040 * 120.00056 * 26 24 22 29 29 H 1.48506 * 109.47158 * 239.99841 * 26 24 22 30 30 C 1.47019 * 125.65277 * 359.97438 * 9 7 6 31 31 H 1.08999 * 109.47400 * 270.16104 * 1 2 3 32 32 H 1.09007 * 109.46976 * 30.15239 * 1 2 3 33 33 H 1.09002 * 109.47482 * 150.15337 * 1 2 3 34 34 H 1.07994 * 126.44711 * 0.02580 * 3 2 1 35 35 H 1.07997 * 125.61092 * 179.78006 * 4 3 2 36 36 H 1.08999 * 110.36190 * 322.93058 * 10 9 7 37 37 H 1.08998 * 110.36491 * 85.14737 * 10 9 7 38 38 H 1.07997 * 120.00515 * 0.02562 * 14 13 11 39 39 H 1.08001 * 120.00177 * 180.23587 * 15 14 13 40 40 H 1.08001 * 119.99606 * 179.83787 * 16 15 14 41 41 H 1.08002 * 120.00066 * 179.97438 * 17 16 15 42 42 H 1.08003 * 120.00144 * 359.97438 * 18 13 11 43 43 H 0.96996 * 120.00388 * 337.43707 * 21 19 11 44 44 H 0.97004 * 120.00220 * 179.97438 * 25 24 22 45 45 H 1.09001 * 109.88251 * 59.55144 * 30 9 7 46 46 H 1.09004 * 109.88394 * 298.39057 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 -0.0050 5 8 3.6004 -0.6648 -0.0032 6 6 2.3219 -1.0955 0.0035 7 6 1.8841 -2.4952 0.0068 8 8 0.6967 -2.7613 0.0124 9 7 2.7969 -3.4868 0.0036 10 6 2.4975 -4.9304 0.0058 11 6 3.7614 -5.5990 0.6142 12 1 3.7495 -5.5399 1.7026 13 6 3.8966 -7.0277 0.1544 14 6 3.8447 -7.3276 -1.1940 15 6 3.9726 -8.6377 -1.6160 16 6 4.1441 -9.6489 -0.6891 17 6 4.1907 -9.3495 0.6595 18 6 4.0667 -8.0390 1.0814 19 6 4.8903 -4.7148 0.0216 20 1 5.1461 -5.0405 -0.9867 21 7 6.0726 -4.7352 0.8864 22 6 7.3038 -4.4306 0.3702 23 1 7.4032 -4.1750 -0.6745 24 6 8.4240 -4.4494 1.1898 25 7 8.3029 -4.7604 2.4628 26 14 10.1034 -4.0332 0.4857 27 1 9.9705 -3.7204 -0.9600 28 1 10.6604 -2.8549 1.1974 29 1 11.0145 -5.1930 0.6599 30 6 4.2562 -3.3081 -0.0037 31 1 -0.3634 0.0029 1.0276 32 1 -0.3633 0.8887 -0.5162 33 1 -0.3634 -0.8914 -0.5114 34 1 2.0307 2.1595 0.0004 35 1 4.5045 1.2915 -0.0097 36 1 1.6247 -5.1357 0.6256 37 1 2.3315 -5.2849 -1.0114 38 1 3.7077 -6.5381 -1.9180 39 1 3.9359 -8.8717 -2.6698 40 1 4.2414 -10.6728 -1.0188 41 1 4.3242 -10.1395 1.3838 42 1 4.1031 -7.8051 2.1351 43 1 5.9834 -4.9644 1.8247 44 1 9.0857 -4.7739 3.0355 45 1 4.5653 -2.7463 0.8778 46 1 4.5606 -2.7804 -0.9076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081088365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:58 Heat of formation + Delta-G solvation = 6.972190 kcal Electronic energy + Delta-G solvation = -29448.105238 eV Core-core repulsion = 25496.921142 eV Total energy + Delta-G solvation = -3951.184097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.68890 -41.29734 -40.01691 -38.56817 -35.97030 -35.07524 -33.98423 -32.69870 -31.73647 -31.48210 -29.90286 -29.03187 -28.36063 -25.99094 -25.01415 -23.68693 -23.16542 -22.42422 -22.05490 -21.14191 -20.37704 -19.23173 -18.67014 -18.00976 -17.47574 -17.31891 -16.92100 -16.61370 -16.21791 -15.88962 -15.82348 -15.35834 -15.04482 -14.79158 -14.66681 -14.30415 -14.08939 -14.04237 -14.00146 -13.93011 -13.81057 -13.52088 -13.41495 -13.20407 -12.99742 -12.77972 -12.74779 -12.58725 -12.16443 -11.98538 -11.85523 -11.75977 -11.61366 -11.27628 -11.01006 -10.66770 -9.95619 -9.72416 -9.55310 -9.49014 -9.04569 -7.94139 -5.24057 0.01164 0.51393 0.59139 1.39599 1.48525 1.49545 1.58691 1.62153 2.03058 2.08806 2.56096 2.90417 3.33642 3.41520 3.64398 3.72284 3.80609 3.83619 3.93833 4.06168 4.14013 4.21263 4.25185 4.29711 4.35778 4.50008 4.52995 4.60681 4.62339 4.67752 4.74391 4.76831 4.79887 4.89129 4.93969 5.06706 5.11582 5.17050 5.19442 5.23916 5.28166 5.49029 5.53187 5.65064 5.69096 5.79649 5.93340 6.20195 6.24731 6.30140 6.87119 7.33833 8.02471 8.28058 9.28882 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007718 B = 0.004430 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3626.782348 B = 6319.257256 C = 9372.492205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.092 4.092 3 C -0.229 4.229 4 C 0.002 3.998 5 O -0.173 6.173 6 C -0.120 4.120 7 C 0.609 3.391 8 O -0.552 6.552 9 N -0.606 5.606 10 C 0.124 3.876 11 C -0.061 4.061 12 H 0.080 0.920 13 C -0.068 4.068 14 C -0.125 4.125 15 C -0.123 4.123 16 C -0.130 4.130 17 C -0.127 4.127 18 C -0.127 4.127 19 C 0.183 3.817 20 H 0.072 0.928 21 N -0.717 5.717 22 C -0.239 4.239 23 H 0.078 0.922 24 C -0.065 4.065 25 N -0.965 5.965 26 Si 0.966 3.034 27 H -0.265 1.265 28 H -0.294 1.294 29 H -0.297 1.297 30 C 0.095 3.905 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.188 0.812 35 H 0.245 0.755 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.128 0.872 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.137 0.863 42 H 0.116 0.884 43 H 0.376 0.624 44 H 0.250 0.750 45 H 0.056 0.944 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.941 3.152 -7.502 15.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.248 4.248 4 C -0.067 4.067 5 O -0.069 6.069 6 C -0.171 4.171 7 C 0.400 3.600 8 O -0.434 6.434 9 N -0.337 5.337 10 C 0.002 3.998 11 C -0.080 4.080 12 H 0.099 0.901 13 C -0.068 4.068 14 C -0.143 4.143 15 C -0.140 4.140 16 C -0.148 4.148 17 C -0.144 4.144 18 C -0.145 4.145 19 C 0.072 3.928 20 H 0.090 0.910 21 N -0.355 5.355 22 C -0.370 4.370 23 H 0.096 0.904 24 C -0.258 4.258 25 N -0.616 5.616 26 Si 0.795 3.205 27 H -0.189 1.189 28 H -0.222 1.222 29 H -0.224 1.224 30 C -0.031 4.031 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.205 0.795 35 H 0.261 0.739 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.146 0.854 39 H 0.162 0.838 40 H 0.163 0.837 41 H 0.155 0.845 42 H 0.134 0.866 43 H 0.208 0.792 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.204 2.877 -7.634 15.521 hybrid contribution 1.255 0.407 0.571 1.437 sum -11.949 3.284 -7.064 14.264 Atomic orbital electron populations 1.20423 0.87366 1.03773 1.03121 1.21030 0.98453 0.91258 0.98783 1.22078 0.91740 1.00835 1.10128 1.25323 1.01684 0.79997 0.99729 1.84238 1.27933 1.24131 1.70589 1.21706 0.82522 0.94432 1.18477 1.16441 0.84567 0.82239 0.76785 1.90778 1.15880 1.82957 1.53808 1.48390 1.07401 1.06754 1.71166 1.22410 0.97269 0.78074 1.01999 1.21552 0.94384 0.91839 1.00266 0.90129 1.19465 0.99914 0.93233 0.94193 1.21147 1.00735 0.97594 0.94815 1.21407 0.99480 0.92384 1.00778 1.21450 0.99990 1.00409 0.92923 1.21374 0.99856 0.96218 0.97000 1.21195 1.00410 0.93434 0.99480 1.21376 0.85975 0.90482 0.94943 0.91047 1.42402 1.02288 1.81836 1.08996 1.19602 0.85428 1.37422 0.94562 0.90387 1.25448 1.01209 1.03136 0.96001 1.69810 1.29502 1.56762 1.05485 0.85192 0.80433 0.76742 0.78102 1.18903 1.22165 1.22399 1.23006 0.77629 1.01045 1.01410 0.90525 0.88844 0.91495 0.79513 0.73869 0.90033 0.89407 0.85442 0.83812 0.83744 0.84517 0.86588 0.79192 0.94067 0.92512 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.03 9.81 71.23 0.70 -1.33 16 2 C -0.09 -2.43 6.20 -19.74 -0.12 -2.55 16 3 C -0.23 -4.63 10.83 22.07 0.24 -4.39 16 4 C 0.00 0.05 12.08 67.10 0.81 0.86 16 5 O -0.17 -5.26 8.28 -5.01 -0.04 -5.30 16 6 C -0.12 -3.83 6.95 24.07 0.17 -3.66 16 7 C 0.61 21.33 7.82 86.44 0.68 22.00 16 8 O -0.55 -20.65 14.99 -4.31 -0.06 -20.72 16 9 N -0.61 -20.41 3.33 -815.54 -2.71 -23.13 16 10 C 0.12 3.76 6.33 87.02 0.55 4.31 16 11 C -0.06 -1.98 2.90 -9.98 -0.03 -2.01 16 12 H 0.08 2.82 7.83 -2.39 -0.02 2.80 16 13 C -0.07 -2.09 5.01 -19.87 -0.10 -2.19 16 14 C -0.13 -3.44 8.32 22.27 0.19 -3.25 16 15 C -0.12 -2.93 10.05 22.27 0.22 -2.71 16 16 C -0.13 -3.03 10.05 22.27 0.22 -2.81 16 17 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 18 C -0.13 -3.87 9.69 22.27 0.22 -3.66 16 19 C 0.18 6.93 3.00 46.18 0.14 7.06 16 20 H 0.07 2.70 7.19 -2.39 -0.02 2.68 16 21 N -0.72 -34.23 5.16 -317.31 -1.64 -35.87 16 22 C -0.24 -12.55 9.97 84.03 0.84 -11.71 16 23 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 24 C -0.07 -3.59 5.50 84.86 0.47 -3.13 16 25 N -0.97 -57.21 13.06 21.65 0.28 -56.93 16 26 Si 0.97 44.63 29.55 68.60 2.03 46.66 16 27 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 28 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 29 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 30 C 0.09 3.43 5.30 86.73 0.46 3.89 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.07 1.78 6.45 -2.39 -0.02 1.76 16 34 H 0.19 2.39 8.06 -2.91 -0.02 2.36 16 35 H 0.25 2.99 8.06 -2.91 -0.02 2.97 16 36 H 0.08 2.43 8.04 -2.39 -0.02 2.41 16 37 H 0.09 2.39 6.66 -2.39 -0.02 2.37 16 38 H 0.13 3.19 7.01 -2.91 -0.02 3.17 16 39 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 40 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 41 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 42 H 0.12 3.51 7.99 -2.91 -0.02 3.48 16 43 H 0.38 19.56 7.74 -92.71 -0.72 18.84 16 44 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 45 H 0.06 2.32 7.57 -2.39 -0.02 2.30 16 46 H 0.07 2.34 7.79 -2.38 -0.02 2.32 16 Total: -1.00 -68.32 382.49 4.01 -64.32 By element: Atomic # 1 Polarization: 39.03 SS G_CDS: 0.29 Total: 39.32 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 5.87 Total: -8.37 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -4.07 Total: -115.92 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.11 Total: -26.02 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -68.32 4.01 -64.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081088365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.291 kcal (2) G-P(sol) polarization free energy of solvation -68.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds