Wall clock time and date at job start Sat Apr 11 2020 06:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34188 * 125.43735 * 2 1 4 4 C 1.47022 * 105.95140 * 180.12681 * 3 2 1 5 5 C 1.47375 * 127.18982 * 179.88878 * 4 3 2 6 6 O 1.21617 * 120.00410 * 5.40379 * 5 4 3 7 7 N 1.34775 * 120.00222 * 185.40293 * 5 4 3 8 8 C 1.47028 * 125.64507 * 355.30425 * 7 5 4 9 9 C 1.54326 * 107.26978 * 178.89351 * 8 7 5 10 10 H 1.09000 * 110.71950 * 96.17184 * 9 8 7 11 11 C 1.50694 * 110.72040 * 219.44254 * 9 8 7 12 12 C 1.38238 * 119.99877 * 53.25340 * 11 9 8 13 13 C 1.38241 * 119.99829 * 179.81067 * 12 11 9 14 14 C 1.38237 * 119.99882 * 0.41736 * 13 12 11 15 15 C 1.38237 * 120.00232 * 359.81000 * 14 13 12 16 16 C 1.38231 * 119.99607 * 0.02562 * 15 14 13 17 17 C 1.55160 * 102.94233 * 337.80813 * 9 8 7 18 18 H 1.08998 * 111.00193 * 277.38875 * 17 9 8 19 19 N 1.46502 * 111.00296 * 153.57712 * 17 9 8 20 20 C 1.36941 * 120.00014 * 154.72438 * 19 17 9 21 21 H 1.07999 * 119.99841 * 359.97438 * 20 19 17 22 22 C 1.38812 * 119.99961 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00061 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99857 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46978 * 60.00047 * 24 22 20 26 26 H 1.48493 * 109.47163 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47113 * 300.00050 * 24 22 20 28 28 C 1.47427 * 125.65490 * 175.25019 * 7 5 4 29 29 C 1.36416 * 105.61602 * 359.63316 * 4 3 2 30 30 O 1.33649 * 108.40044 * 0.22081 * 29 4 3 31 31 H 1.09001 * 109.47102 * 180.27155 * 1 2 3 32 32 H 1.09005 * 109.46930 * 300.26516 * 1 2 3 33 33 H 1.08997 * 109.47438 * 60.26209 * 1 2 3 34 34 H 1.07996 * 127.02137 * 0.02562 * 3 2 1 35 35 H 1.08998 * 109.88385 * 59.47902 * 8 7 5 36 36 H 1.08995 * 110.01252 * 298.38286 * 8 7 5 37 37 H 1.07998 * 120.00355 * 359.97438 * 12 11 9 38 38 H 1.07998 * 119.99700 * 180.20530 * 13 12 11 39 39 H 1.08000 * 119.99866 * 179.79461 * 14 13 12 40 40 H 1.07988 * 119.99929 * 179.97438 * 15 14 13 41 41 H 1.08007 * 119.99834 * 179.97438 * 16 15 14 42 42 H 0.97001 * 120.00186 * 334.99378 * 19 17 9 43 43 H 0.96998 * 119.99696 * 180.02562 * 23 22 20 44 44 H 1.08999 * 110.36768 * 85.33267 * 28 7 5 45 45 H 1.09007 * 110.36224 * 323.01633 * 28 7 5 46 46 H 1.08007 * 125.79760 * 180.22760 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6710 0.6029 -0.0031 5 6 4.9024 1.4125 -0.0066 6 8 4.8348 2.6228 0.0921 7 7 6.1036 0.8118 -0.1191 8 6 6.3365 -0.6397 -0.1474 9 6 7.8551 -0.8569 -0.3156 10 1 8.3305 -1.0215 0.6513 11 6 8.1289 -2.0080 -1.2488 12 6 7.5542 -2.0304 -2.5059 13 6 7.8085 -3.0845 -3.3634 14 6 8.6306 -4.1203 -2.9607 15 6 9.2016 -4.1002 -1.7019 16 6 8.9499 -3.0445 -0.8457 17 6 8.3305 0.4814 -0.9404 18 1 8.1713 0.4875 -2.0186 19 7 9.7359 0.7412 -0.6184 20 6 10.4913 1.5344 -1.4403 21 1 10.0510 1.9681 -2.3260 22 6 11.8227 1.7810 -1.1350 23 7 12.3591 1.2529 -0.0553 24 14 12.8533 2.8625 -2.2565 25 1 12.2464 4.2156 -2.3339 26 1 14.2309 2.9688 -1.7126 27 1 12.9016 2.2633 -3.6144 28 6 7.4017 1.5010 -0.2353 29 6 3.5790 -0.7582 0.0037 30 8 2.2852 -1.0935 0.0055 31 1 -0.3633 -1.0277 0.0049 32 1 -0.3633 0.5180 0.8876 33 1 -0.3634 0.5097 -0.8923 34 1 1.9595 2.1230 0.0004 35 1 5.8031 -1.0844 -0.9876 36 1 5.9987 -1.0899 0.7860 37 1 6.9086 -1.2232 -2.8190 38 1 7.3622 -3.1003 -4.3467 39 1 8.8266 -4.9453 -3.6294 40 1 9.8434 -4.9095 -1.3872 41 1 9.3957 -3.0290 0.1380 42 1 10.1324 0.3482 0.1748 43 1 13.2894 1.4256 0.1582 44 1 7.7900 1.7478 0.7529 45 1 7.2997 2.4025 -0.8397 46 1 4.4104 -1.4476 0.0072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081110169.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:02 Heat of formation + Delta-G solvation = 29.357280 kcal Electronic energy + Delta-G solvation = -29195.182908 eV Core-core repulsion = 25244.969502 eV Total energy + Delta-G solvation = -3950.213406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.69863 -40.11385 -38.83554 -37.12328 -34.28386 -33.21619 -32.67900 -32.10899 -30.91504 -30.71486 -28.45961 -27.99938 -26.49351 -24.84460 -23.47258 -22.82530 -22.31118 -21.23254 -20.72652 -19.89809 -19.33455 -17.56692 -16.97929 -16.70164 -16.47710 -16.30425 -15.86895 -15.31855 -14.86297 -14.74494 -14.45686 -14.04650 -13.64958 -13.49026 -13.39875 -13.33343 -13.29546 -13.13518 -13.05817 -12.83442 -12.76825 -12.38697 -12.18649 -12.04488 -11.69283 -11.53504 -10.97837 -10.90714 -10.80595 -10.68351 -10.41247 -10.16244 -9.89547 -9.83821 -9.76520 -9.07934 -8.74014 -8.71651 -8.51413 -8.35466 -7.10283 -5.85795 -3.16421 1.28251 1.54448 1.61193 1.91370 2.65383 3.10285 3.41283 3.43529 3.45968 3.46779 3.94585 4.34821 4.50389 4.51112 4.69874 4.76143 4.91646 4.92874 5.05260 5.14537 5.14853 5.17652 5.23536 5.27928 5.35008 5.39052 5.47397 5.59580 5.61216 5.67617 5.71966 5.79146 5.82268 5.85514 6.04457 6.14842 6.19944 6.23916 6.26796 6.41414 6.53671 6.65275 6.68809 6.75762 6.86221 6.88725 7.20061 7.63365 7.68336 8.30478 8.34121 9.43563 9.94342 10.29615 11.35933 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010222 B = 0.003507 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.581045 B = 7982.288517 C =10083.121364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.020 4.020 3 C -0.163 4.163 4 C -0.222 4.222 5 C 0.595 3.405 6 O -0.539 6.539 7 N -0.609 5.609 8 C 0.100 3.900 9 C -0.075 4.075 10 H 0.096 0.904 11 C -0.052 4.052 12 C -0.116 4.116 13 C -0.120 4.120 14 C -0.129 4.129 15 C -0.118 4.118 16 C -0.105 4.105 17 C 0.185 3.815 18 H 0.072 0.928 19 N -0.705 5.705 20 C -0.248 4.248 21 H 0.072 0.928 22 C -0.005 4.005 23 N -0.929 5.929 24 Si 0.908 3.092 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.082 3.918 29 C 0.004 3.996 30 O -0.175 6.175 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.158 0.842 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.299 -11.541 -0.933 22.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.069 4.069 3 C -0.183 4.183 4 C -0.226 4.226 5 C 0.385 3.615 6 O -0.417 6.417 7 N -0.343 5.343 8 C -0.023 4.023 9 C -0.095 4.095 10 H 0.114 0.886 11 C -0.053 4.053 12 C -0.134 4.134 13 C -0.138 4.138 14 C -0.147 4.147 15 C -0.136 4.136 16 C -0.123 4.123 17 C 0.072 3.928 18 H 0.089 0.911 19 N -0.344 5.344 20 C -0.379 4.379 21 H 0.090 0.910 22 C -0.202 4.202 23 N -0.576 5.576 24 Si 0.738 3.262 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.212 1.212 28 C -0.043 4.043 29 C -0.066 4.066 30 O -0.071 6.071 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.176 0.824 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.222 0.778 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -19.387 -11.011 -0.994 22.318 hybrid contribution 1.087 0.643 -0.308 1.300 sum -18.300 -10.368 -1.303 21.073 Atomic orbital electron populations 1.20314 0.84769 1.04037 1.03758 1.22312 0.94131 0.83768 1.06671 1.22468 0.89983 0.99704 1.06141 1.21531 0.94632 0.93283 1.13184 1.16910 0.81147 0.86635 0.76821 1.90784 1.86471 1.13839 1.50646 1.48332 1.06601 1.07371 1.71973 1.22398 0.96920 0.81984 1.01022 1.21577 0.93396 0.95199 0.99349 0.88573 1.19518 0.96883 0.94312 0.94553 1.20963 1.00540 0.98225 0.93652 1.21042 0.98993 0.94502 0.99228 1.21062 0.98369 0.98842 0.96440 1.21082 0.99705 0.98583 0.94275 1.21049 0.97669 0.93513 1.00078 1.21393 0.85854 0.88463 0.97089 0.91053 1.42224 1.04051 1.58430 1.29671 1.19177 0.92203 1.22472 1.04036 0.91037 1.24737 0.97024 1.00606 0.97834 1.69641 1.13577 1.48129 1.26240 0.86267 0.79522 0.80451 0.79956 1.21065 1.21627 1.21152 1.23505 0.80699 0.98124 1.01968 1.25254 0.84092 0.96053 1.01195 1.83747 1.16622 1.35480 1.71236 0.90488 0.89592 0.89586 0.82443 0.90878 0.91181 0.86344 0.86502 0.86634 0.86401 0.86021 0.77810 0.93293 0.91100 0.90636 0.76425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.40 36.00 0.37 -0.06 16 2 C -0.02 -0.21 7.28 -35.74 -0.26 -0.47 16 3 C -0.16 -2.03 10.90 -37.45 -0.41 -2.44 16 4 C -0.22 -3.10 6.28 -103.28 -0.65 -3.75 16 5 C 0.60 10.19 7.84 -12.54 -0.10 10.09 16 6 O -0.54 -11.25 17.28 5.26 0.09 -11.16 16 7 N -0.61 -9.63 3.33 -171.80 -0.57 -10.20 16 8 C 0.10 1.24 4.48 -3.06 -0.01 1.23 16 9 C -0.08 -1.10 2.82 -89.94 -0.25 -1.35 16 10 H 0.10 1.42 7.82 -51.93 -0.41 1.01 16 11 C -0.05 -0.74 4.95 -104.62 -0.52 -1.26 16 12 C -0.12 -1.56 8.11 -39.58 -0.32 -1.88 16 13 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 14 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 15 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 16 C -0.11 -1.46 9.69 -39.58 -0.38 -1.85 16 17 C 0.19 3.43 3.11 -65.78 -0.20 3.23 16 18 H 0.07 1.38 7.17 -51.93 -0.37 1.01 16 19 N -0.70 -16.50 5.24 -51.35 -0.27 -16.76 16 20 C -0.25 -6.61 9.96 -15.06 -0.15 -6.76 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 23 N -0.93 -27.03 13.06 55.49 0.72 -26.31 16 24 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 C 0.08 1.52 6.58 -2.53 -0.02 1.50 16 29 C 0.00 0.04 10.63 30.08 0.32 0.36 16 30 O -0.17 -1.93 10.52 7.65 0.08 -1.85 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.07 0.79 5.29 -51.93 -0.27 0.52 16 36 H 0.07 0.72 7.15 -51.93 -0.37 0.35 16 37 H 0.12 1.50 7.29 -52.49 -0.38 1.12 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.12 1.60 7.98 -52.48 -0.42 1.18 16 42 H 0.39 9.58 7.76 -40.82 -0.32 9.27 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.08 1.52 8.08 -51.93 -0.42 1.10 16 46 H 0.22 1.88 4.50 -52.48 -0.24 1.64 16 LS Contribution 382.95 15.07 5.77 5.77 Total: -1.00 -33.02 382.95 -9.19 -42.21 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -6.13 Total: 10.65 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -3.87 Total: -9.39 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.12 Total: -53.27 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.17 Total: -13.01 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.02 -9.19 -42.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081110169.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.568 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds