Wall clock time and date at job start Sat Apr 11 2020 06:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34188 * 125.43735 * 2 1 4 4 C 1.47022 * 105.95140 * 180.12681 * 3 2 1 5 5 C 1.47375 * 127.18982 * 179.88878 * 4 3 2 6 6 O 1.21617 * 120.00410 * 5.40379 * 5 4 3 7 7 N 1.34775 * 120.00222 * 185.40293 * 5 4 3 8 8 C 1.47028 * 125.64507 * 355.30425 * 7 5 4 9 9 C 1.54326 * 107.26978 * 178.89351 * 8 7 5 10 10 H 1.09000 * 110.71950 * 96.17184 * 9 8 7 11 11 C 1.50694 * 110.72040 * 219.44254 * 9 8 7 12 12 C 1.38238 * 119.99877 * 53.25340 * 11 9 8 13 13 C 1.38241 * 119.99829 * 179.81067 * 12 11 9 14 14 C 1.38237 * 119.99882 * 0.41736 * 13 12 11 15 15 C 1.38237 * 120.00232 * 359.81000 * 14 13 12 16 16 C 1.38231 * 119.99607 * 0.02562 * 15 14 13 17 17 C 1.55160 * 102.94233 * 337.80813 * 9 8 7 18 18 H 1.08998 * 111.00193 * 277.38875 * 17 9 8 19 19 N 1.46502 * 111.00296 * 153.57712 * 17 9 8 20 20 C 1.36941 * 120.00014 * 154.72438 * 19 17 9 21 21 H 1.07999 * 119.99841 * 359.97438 * 20 19 17 22 22 C 1.38812 * 119.99961 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00061 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99857 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46978 * 60.00047 * 24 22 20 26 26 H 1.48493 * 109.47163 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47113 * 300.00050 * 24 22 20 28 28 C 1.47427 * 125.65490 * 175.25019 * 7 5 4 29 29 C 1.36416 * 105.61602 * 359.63316 * 4 3 2 30 30 O 1.33649 * 108.40044 * 0.22081 * 29 4 3 31 31 H 1.09001 * 109.47102 * 180.27155 * 1 2 3 32 32 H 1.09005 * 109.46930 * 300.26516 * 1 2 3 33 33 H 1.08997 * 109.47438 * 60.26209 * 1 2 3 34 34 H 1.07996 * 127.02137 * 0.02562 * 3 2 1 35 35 H 1.08998 * 109.88385 * 59.47902 * 8 7 5 36 36 H 1.08995 * 110.01252 * 298.38286 * 8 7 5 37 37 H 1.07998 * 120.00355 * 359.97438 * 12 11 9 38 38 H 1.07998 * 119.99700 * 180.20530 * 13 12 11 39 39 H 1.08000 * 119.99866 * 179.79461 * 14 13 12 40 40 H 1.07988 * 119.99929 * 179.97438 * 15 14 13 41 41 H 1.08007 * 119.99834 * 179.97438 * 16 15 14 42 42 H 0.97001 * 120.00186 * 334.99378 * 19 17 9 43 43 H 0.96998 * 119.99696 * 180.02562 * 23 22 20 44 44 H 1.08999 * 110.36768 * 85.33267 * 28 7 5 45 45 H 1.09007 * 110.36224 * 323.01633 * 28 7 5 46 46 H 1.08007 * 125.79760 * 180.22760 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6710 0.6029 -0.0031 5 6 4.9024 1.4125 -0.0066 6 8 4.8348 2.6228 0.0921 7 7 6.1036 0.8118 -0.1191 8 6 6.3365 -0.6397 -0.1474 9 6 7.8551 -0.8569 -0.3156 10 1 8.3305 -1.0215 0.6513 11 6 8.1289 -2.0080 -1.2488 12 6 7.5542 -2.0304 -2.5059 13 6 7.8085 -3.0845 -3.3634 14 6 8.6306 -4.1203 -2.9607 15 6 9.2016 -4.1002 -1.7019 16 6 8.9499 -3.0445 -0.8457 17 6 8.3305 0.4814 -0.9404 18 1 8.1713 0.4875 -2.0186 19 7 9.7359 0.7412 -0.6184 20 6 10.4913 1.5344 -1.4403 21 1 10.0510 1.9681 -2.3260 22 6 11.8227 1.7810 -1.1350 23 7 12.3591 1.2529 -0.0553 24 14 12.8533 2.8625 -2.2565 25 1 12.2464 4.2156 -2.3339 26 1 14.2309 2.9688 -1.7126 27 1 12.9016 2.2633 -3.6144 28 6 7.4017 1.5010 -0.2353 29 6 3.5790 -0.7582 0.0037 30 8 2.2852 -1.0935 0.0055 31 1 -0.3633 -1.0277 0.0049 32 1 -0.3633 0.5180 0.8876 33 1 -0.3634 0.5097 -0.8923 34 1 1.9595 2.1230 0.0004 35 1 5.8031 -1.0844 -0.9876 36 1 5.9987 -1.0899 0.7860 37 1 6.9086 -1.2232 -2.8190 38 1 7.3622 -3.1003 -4.3467 39 1 8.8266 -4.9453 -3.6294 40 1 9.8434 -4.9095 -1.3872 41 1 9.3957 -3.0290 0.1380 42 1 10.1324 0.3482 0.1748 43 1 13.2894 1.4256 0.1582 44 1 7.7900 1.7478 0.7529 45 1 7.2997 2.4025 -0.8397 46 1 4.4104 -1.4476 0.0072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081110169.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:01 Heat of formation + Delta-G solvation = 9.886292 kcal Electronic energy + Delta-G solvation = -29196.027234 eV Core-core repulsion = 25244.969502 eV Total energy + Delta-G solvation = -3951.057732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.60346 -41.37560 -39.99309 -38.46121 -36.04846 -34.22446 -33.89890 -33.06993 -32.56594 -31.69487 -29.81748 -29.22060 -27.40498 -26.31765 -25.09840 -23.93100 -23.32844 -22.34735 -21.86615 -21.16767 -20.49058 -19.35143 -17.98576 -17.93775 -17.63942 -17.33211 -17.02440 -16.59031 -16.31836 -15.96872 -15.79309 -15.44265 -15.02992 -14.76449 -14.65381 -14.37726 -14.17095 -14.11840 -13.99245 -13.81785 -13.78376 -13.73128 -13.40130 -13.14977 -13.06391 -12.73661 -12.72144 -12.50698 -12.25937 -11.97826 -11.86205 -11.76973 -11.62822 -11.23703 -11.02719 -10.87239 -9.84864 -9.68248 -9.57800 -9.52928 -9.03979 -7.97587 -5.26925 0.28315 0.53269 0.61729 0.99835 1.46218 1.48238 1.53811 1.69299 1.95793 2.20874 2.53849 2.92167 3.27372 3.42412 3.48301 3.61646 3.75375 3.79855 3.93222 4.05550 4.15371 4.23447 4.24579 4.27372 4.36970 4.38480 4.45957 4.48719 4.57709 4.69141 4.74152 4.75900 4.81949 4.83454 4.85828 4.89736 5.02761 5.14085 5.22129 5.24180 5.28907 5.39857 5.49489 5.67827 5.72417 5.81656 5.98551 6.22521 6.23149 6.39523 7.00543 7.31450 8.00379 8.25802 9.24515 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010222 B = 0.003507 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.581045 B = 7982.288517 C =10083.121364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.004 4.004 3 C -0.194 4.194 4 C -0.255 4.255 5 C 0.592 3.408 6 O -0.590 6.590 7 N -0.606 5.606 8 C 0.101 3.899 9 C -0.061 4.061 10 H 0.094 0.906 11 C -0.067 4.067 12 C -0.126 4.126 13 C -0.123 4.123 14 C -0.130 4.130 15 C -0.126 4.126 16 C -0.122 4.122 17 C 0.185 3.815 18 H 0.065 0.935 19 N -0.714 5.714 20 C -0.246 4.246 21 H 0.072 0.928 22 C -0.063 4.063 23 N -0.961 5.961 24 Si 0.965 3.035 25 H -0.282 1.282 26 H -0.294 1.294 27 H -0.278 1.278 28 C 0.092 3.908 29 C 0.030 3.970 30 O -0.172 6.172 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.154 0.846 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.121 0.879 42 H 0.379 0.621 43 H 0.252 0.748 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.310 -14.129 -2.015 25.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.052 4.052 3 C -0.214 4.214 4 C -0.259 4.259 5 C 0.384 3.616 6 O -0.473 6.473 7 N -0.338 5.338 8 C -0.020 4.020 9 C -0.080 4.080 10 H 0.112 0.888 11 C -0.068 4.068 12 C -0.144 4.144 13 C -0.141 4.141 14 C -0.147 4.147 15 C -0.144 4.144 16 C -0.140 4.140 17 C 0.074 3.926 18 H 0.083 0.917 19 N -0.352 5.352 20 C -0.378 4.378 21 H 0.090 0.910 22 C -0.256 4.256 23 N -0.611 5.611 24 Si 0.794 3.206 25 H -0.209 1.209 26 H -0.220 1.220 27 H -0.204 1.204 28 C -0.034 4.034 29 C -0.040 4.040 30 O -0.067 6.067 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.172 0.828 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.140 0.860 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.154 0.846 41 H 0.139 0.861 42 H 0.212 0.788 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -21.453 -13.640 -2.097 25.508 hybrid contribution 1.608 1.380 -0.003 2.119 sum -19.845 -12.260 -2.100 23.421 Atomic orbital electron populations 1.20551 0.81584 1.05551 1.05200 1.22972 0.95661 0.82646 1.03929 1.22589 0.89880 1.00524 1.08404 1.21354 0.93730 0.94406 1.16429 1.17406 0.82099 0.86374 0.75717 1.90744 1.87211 1.16141 1.53173 1.48288 1.05362 1.08645 1.71487 1.22637 0.95699 0.79925 1.03786 1.21389 0.94541 0.93111 0.99000 0.88820 1.19484 0.98001 0.94288 0.94978 1.21103 1.00836 0.98877 0.93566 1.21368 0.98761 0.94004 0.99992 1.21431 0.97437 0.99400 0.96472 1.21379 0.99840 0.98684 0.94465 1.21211 0.97968 0.94186 1.00647 1.21445 0.83482 0.90800 0.96915 0.91670 1.42286 1.05769 1.58150 1.29028 1.19490 0.92545 1.21794 1.03928 0.91034 1.25435 0.98290 1.02507 0.99379 1.69776 1.13439 1.49931 1.27915 0.85342 0.77740 0.78934 0.78534 1.20857 1.22010 1.20379 1.23087 0.82435 0.97485 1.00428 1.25577 0.84833 0.95080 0.98506 1.83801 1.16516 1.35668 1.70763 0.88891 0.88108 0.88087 0.82804 0.88391 0.87937 0.85968 0.84239 0.84030 0.84563 0.86069 0.78819 0.93901 0.92822 0.93152 0.73892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.40 71.24 0.74 0.10 16 2 C 0.00 -0.06 7.28 24.76 0.18 0.12 16 3 C -0.19 -4.71 10.90 23.65 0.26 -4.45 16 4 C -0.25 -6.91 6.28 -18.99 -0.12 -7.03 16 5 C 0.59 20.65 7.84 86.65 0.68 21.33 16 6 O -0.59 -25.92 17.28 -4.08 -0.07 -25.99 16 7 N -0.61 -19.24 3.33 -815.70 -2.71 -21.95 16 8 C 0.10 2.34 4.48 86.73 0.39 2.73 16 9 C -0.06 -1.74 2.82 -10.35 -0.03 -1.77 16 10 H 0.09 2.74 7.82 -2.39 -0.02 2.72 16 11 C -0.07 -1.82 4.95 -19.87 -0.10 -1.92 16 12 C -0.13 -3.14 8.11 22.27 0.18 -2.96 16 13 C -0.12 -2.70 10.05 22.27 0.22 -2.48 16 14 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 15 C -0.13 -2.92 10.05 22.27 0.22 -2.69 16 16 C -0.12 -3.25 9.69 22.27 0.22 -3.03 16 17 C 0.18 7.00 3.11 46.38 0.14 7.15 16 18 H 0.07 2.56 7.17 -2.39 -0.02 2.54 16 19 N -0.71 -34.36 5.24 -316.38 -1.66 -36.02 16 20 C -0.25 -13.37 9.96 84.03 0.84 -12.53 16 21 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 22 C -0.06 -3.55 5.50 84.86 0.47 -3.08 16 23 N -0.96 -57.25 13.06 21.65 0.28 -56.96 16 24 Si 0.97 46.00 29.55 68.60 2.03 48.03 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 26 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 27 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 28 C 0.09 3.54 6.58 86.85 0.57 4.11 16 29 C 0.03 0.59 10.63 67.39 0.72 1.30 16 30 O -0.17 -3.25 10.52 4.47 0.05 -3.21 16 31 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 35 H 0.10 1.83 5.29 -2.39 -0.01 1.82 16 36 H 0.10 1.78 7.15 -2.39 -0.02 1.77 16 37 H 0.12 2.88 7.29 -2.91 -0.02 2.86 16 38 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 39 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.14 2.56 8.06 -2.92 -0.02 2.54 16 41 H 0.12 3.13 7.98 -2.91 -0.02 3.10 16 42 H 0.38 19.37 7.76 -92.71 -0.72 18.65 16 43 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 44 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.05 2.16 8.08 -2.38 -0.02 2.14 16 46 H 0.25 3.22 4.50 -2.91 -0.01 3.21 16 Total: -1.00 -74.41 382.95 4.01 -70.40 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: 0.29 Total: 33.34 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 5.80 Total: -7.63 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -4.09 Total: -114.94 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.02 Total: -29.20 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -74.41 4.01 -70.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081110169.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.287 kcal (2) G-P(sol) polarization free energy of solvation -74.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds