Wall clock time and date at job start Sat Apr 11 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35135 * 126.44164 * 2 1 4 4 O 1.33928 * 108.76621 * 180.02562 * 3 2 1 5 5 C 1.34912 * 109.38949 * 359.97438 * 4 3 2 6 6 C 1.46655 * 125.98952 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99810 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00110 * 359.75730 * 6 5 4 9 9 C 1.48114 * 127.03022 * 179.97438 * 8 6 5 10 10 C 1.54598 * 103.42308 * 219.28203 * 9 8 6 11 11 H 1.09000 * 110.72695 * 81.23998 * 10 9 8 12 12 C 1.50700 * 110.83757 * 204.45201 * 10 9 8 13 13 C 1.38235 * 120.00131 * 53.28119 * 12 10 9 14 14 C 1.38230 * 119.99613 * 179.78722 * 13 12 10 15 15 C 1.38231 * 120.00331 * 0.45224 * 14 13 12 16 16 C 1.38236 * 119.99943 * 359.80253 * 15 14 13 17 17 C 1.38234 * 119.99517 * 233.56394 * 12 10 9 18 18 C 1.54618 * 102.90945 * 322.87122 * 10 9 8 19 19 H 1.09001 * 110.32737 * 262.80485 * 18 10 9 20 20 N 1.46506 * 110.32865 * 140.58811 * 18 10 9 21 21 C 1.36933 * 120.00088 * 157.92169 * 20 18 10 22 22 H 1.07999 * 119.99950 * 0.02562 * 21 20 18 23 23 C 1.38814 * 120.00175 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99547 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00022 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47427 * 90.00118 * 25 23 21 27 27 H 1.48502 * 109.46560 * 210.00035 * 25 23 21 28 28 H 1.48495 * 109.47234 * 329.99356 * 25 23 21 29 29 C 1.47480 * 127.03281 * 0.29313 * 8 6 5 30 30 C 1.36551 * 108.01969 * 0.26625 * 5 4 3 31 31 H 1.08997 * 109.47063 * 90.02279 * 1 2 3 32 32 H 1.08999 * 109.46556 * 210.02293 * 1 2 3 33 33 H 1.08997 * 109.47066 * 330.02110 * 1 2 3 34 34 H 1.07995 * 125.61624 * 0.04400 * 3 2 1 35 35 H 1.08998 * 110.66539 * 337.76712 * 9 8 6 36 36 H 1.09004 * 110.66130 * 100.88294 * 9 8 6 37 37 H 1.08001 * 119.99676 * 0.02562 * 13 12 10 38 38 H 1.08003 * 119.99976 * 180.27451 * 14 13 12 39 39 H 1.08001 * 120.00108 * 179.83211 * 15 14 13 40 40 H 1.08002 * 120.00346 * 179.97438 * 16 15 14 41 41 H 1.08003 * 120.00548 * 359.97221 * 17 12 10 42 42 H 0.96991 * 119.99659 * 337.92723 * 20 18 10 43 43 H 0.97003 * 119.99476 * 180.02562 * 24 23 21 44 44 H 1.09004 * 109.91704 * 273.88067 * 29 8 6 45 45 H 1.08994 * 109.91326 * 35.15986 * 29 8 6 46 46 H 1.07999 * 126.64435 * 179.71454 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 -0.0006 5 6 3.6261 -0.6681 -0.0004 6 6 4.8380 -1.4940 -0.0014 7 8 4.7472 -2.7076 -0.0015 8 7 6.0521 -0.9090 -0.0076 9 6 7.3689 -1.5871 -0.0089 10 6 8.2239 -0.7127 0.9369 11 1 8.0262 -0.9645 1.9789 12 6 9.6905 -0.8597 0.6234 13 6 10.1453 -0.6574 -0.6663 14 6 11.4913 -0.7879 -0.9529 15 6 12.3811 -1.1300 0.0481 16 6 11.9256 -1.3375 1.3366 17 6 10.5802 -1.2027 1.6242 18 6 7.7367 0.7196 0.6178 19 1 8.4103 1.1993 -0.0923 20 7 7.6435 1.5112 1.8470 21 6 7.6791 2.8787 1.7851 22 1 7.7754 3.3737 0.8301 23 6 7.5914 3.6288 2.9499 24 7 7.4735 3.0255 4.1137 25 14 7.6392 5.4942 2.8653 26 1 6.2577 6.0187 2.7185 27 1 8.2426 6.0308 4.1116 28 1 8.4554 5.9161 1.6987 29 6 6.3414 0.5371 -0.0078 30 6 2.3408 -1.1291 -0.0057 31 1 -0.3633 -0.0004 -1.0276 32 1 -0.3632 -0.8898 0.5142 33 1 -0.3633 0.8902 0.5135 34 1 1.9770 2.1145 0.0007 35 1 7.2800 -2.6009 0.3814 36 1 7.7959 -1.5961 -1.0118 37 1 9.4495 -0.3935 -1.4490 38 1 11.8472 -0.6255 -1.9595 39 1 13.4323 -1.2346 -0.1764 40 1 12.6207 -1.6052 2.1187 41 1 10.2243 -1.3648 2.6310 42 1 7.5567 1.0666 2.7047 43 1 7.4118 3.5496 4.9276 44 1 6.3405 0.9158 -1.0300 45 1 5.5959 1.0649 0.5870 46 1 2.0267 -2.1624 -0.0113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081165688.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:05 Heat of formation + Delta-G solvation = 25.668262 kcal Electronic energy + Delta-G solvation = -29330.352924 eV Core-core repulsion = 25379.979550 eV Total energy + Delta-G solvation = -3950.373374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.60085 -40.01872 -38.81832 -37.22088 -34.31238 -33.96476 -32.63246 -30.92685 -30.71642 -30.53243 -28.54485 -27.48097 -27.10766 -24.75044 -23.54560 -22.62561 -22.04474 -21.19672 -20.87491 -19.75546 -19.12522 -17.46682 -17.13470 -16.69424 -16.43631 -16.23197 -15.62396 -15.35490 -14.89596 -14.69929 -14.42668 -13.72585 -13.61562 -13.43549 -13.34284 -13.28840 -13.18201 -13.12644 -12.92142 -12.69130 -12.51938 -12.40655 -12.06948 -11.76270 -11.66304 -11.34796 -10.96288 -10.94002 -10.80152 -10.66783 -10.43364 -10.18666 -10.02205 -9.79425 -9.66477 -9.10476 -8.71910 -8.67055 -8.47626 -8.30526 -7.07336 -5.85262 -3.15712 1.19051 1.56029 1.61917 2.34655 2.77069 3.25896 3.33401 3.37869 3.43735 3.45195 3.97214 4.49899 4.58759 4.77810 4.87711 4.95117 4.96411 5.06952 5.16378 5.21497 5.28817 5.32850 5.48306 5.50199 5.53952 5.60847 5.64705 5.69321 5.72948 5.75338 5.79494 5.90375 5.92824 5.99757 6.09063 6.19733 6.24498 6.28470 6.34008 6.42954 6.51366 6.64296 6.69539 6.82172 6.91728 6.99466 7.21245 7.61471 7.67032 8.18559 8.31523 9.43720 9.96835 10.31870 11.36684 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007565 B = 0.004424 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3700.299091 B = 6327.994019 C = 9373.131344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.201 4.201 3 C -0.007 4.007 4 O -0.147 6.147 5 C -0.064 4.064 6 C 0.617 3.383 7 O -0.536 6.536 8 N -0.605 5.605 9 C 0.118 3.882 10 C -0.075 4.075 11 H 0.093 0.907 12 C -0.052 4.052 13 C -0.116 4.116 14 C -0.120 4.120 15 C -0.130 4.130 16 C -0.119 4.119 17 C -0.106 4.106 18 C 0.180 3.820 19 H 0.071 0.929 20 N -0.711 5.711 21 C -0.246 4.246 22 H 0.072 0.928 23 C -0.007 4.007 24 N -0.928 5.928 25 Si 0.906 3.094 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.069 3.931 30 C -0.125 4.125 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.207 0.793 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.002 -7.882 -10.193 13.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.202 4.202 3 C -0.078 4.078 4 O -0.041 6.041 5 C -0.116 4.116 6 C 0.406 3.594 7 O -0.416 6.416 8 N -0.336 5.336 9 C -0.005 4.005 10 C -0.095 4.095 11 H 0.111 0.889 12 C -0.053 4.053 13 C -0.134 4.134 14 C -0.139 4.139 15 C -0.148 4.148 16 C -0.137 4.137 17 C -0.124 4.124 18 C 0.068 3.932 19 H 0.089 0.911 20 N -0.351 5.351 21 C -0.376 4.376 22 H 0.090 0.910 23 C -0.203 4.203 24 N -0.576 5.576 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.057 4.057 30 C -0.146 4.146 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.223 0.777 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.115 0.885 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.823 -8.165 -10.206 13.372 hybrid contribution -0.205 1.118 0.395 1.203 sum -3.028 -7.047 -9.811 12.453 Atomic orbital electron populations 1.20142 0.88851 1.02720 1.02008 1.20426 0.97523 0.92423 1.09870 1.24269 0.80377 1.00059 1.03078 1.84282 1.28700 1.21476 1.69635 1.21954 0.95743 0.80813 1.13122 1.16172 0.80304 0.85823 0.77066 1.90843 1.85712 1.12190 1.52872 1.48661 1.04629 1.09615 1.70685 1.22473 0.81335 0.97115 0.99542 1.21554 0.90389 0.97064 1.00490 0.88854 1.19563 0.94429 0.97845 0.93422 1.20977 0.95667 1.00501 0.96284 1.21044 0.93398 1.00358 0.99054 1.21061 0.99273 1.01071 0.93427 1.21092 0.95591 1.00438 0.96589 1.21085 0.93144 0.99181 0.99030 1.21192 0.91888 0.89191 0.90929 0.91130 1.42449 1.86970 1.03189 1.02519 1.19206 1.43128 0.82228 0.93083 0.91012 1.24738 1.02387 0.97925 0.95287 1.69663 1.56454 1.34352 0.97109 0.86218 0.77591 0.85626 0.76911 1.21663 1.21747 1.20655 1.23672 1.02162 0.78770 1.01074 1.21743 0.90489 1.00308 1.02081 0.91536 0.91469 0.91528 0.77673 0.89723 0.90548 0.86161 0.86448 0.86616 0.86390 0.86013 0.77955 0.93389 0.92304 0.88540 0.82583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.39 36.00 0.37 -0.33 16 2 C -0.20 -2.49 6.14 -104.93 -0.64 -3.13 16 3 C -0.01 -0.10 12.00 29.63 0.36 0.26 16 4 O -0.15 -2.36 7.97 5.01 0.04 -2.32 16 5 C -0.06 -1.06 6.95 -36.80 -0.26 -1.32 16 6 C 0.62 11.07 7.86 -12.86 -0.10 10.97 16 7 O -0.54 -10.52 17.07 5.19 0.09 -10.43 16 8 N -0.60 -10.20 3.29 -171.53 -0.56 -10.76 16 9 C 0.12 1.76 6.45 -2.31 -0.01 1.75 16 10 C -0.07 -1.20 2.98 -90.08 -0.27 -1.47 16 11 H 0.09 1.62 7.54 -51.93 -0.39 1.23 16 12 C -0.05 -0.78 4.93 -104.62 -0.52 -1.30 16 13 C -0.12 -1.58 8.19 -39.59 -0.32 -1.90 16 14 C -0.12 -1.49 10.05 -39.59 -0.40 -1.89 16 15 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 16 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 17 C -0.11 -1.57 9.68 -39.58 -0.38 -1.95 16 18 C 0.18 3.35 3.13 -66.56 -0.21 3.14 16 19 H 0.07 1.32 7.15 -51.93 -0.37 0.95 16 20 N -0.71 -16.74 5.07 -52.09 -0.26 -17.01 16 21 C -0.25 -6.43 9.97 -15.06 -0.15 -6.58 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 23 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 24 N -0.93 -27.09 13.06 55.49 0.72 -26.36 16 25 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 C 0.07 1.20 6.08 -2.99 -0.02 1.19 16 30 C -0.13 -1.81 10.57 -39.39 -0.42 -2.23 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.21 1.87 8.06 -52.49 -0.42 1.44 16 35 H 0.08 1.27 7.85 -51.93 -0.41 0.86 16 36 H 0.08 1.01 6.71 -51.93 -0.35 0.66 16 37 H 0.12 1.47 7.25 -52.49 -0.38 1.09 16 38 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.12 1.74 7.98 -52.48 -0.42 1.32 16 42 H 0.39 9.85 7.54 -40.82 -0.31 9.55 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.10 1.93 6.01 -51.93 -0.31 1.62 16 46 H 0.16 2.06 8.06 -52.49 -0.42 1.63 16 LS Contribution 385.33 15.07 5.81 5.81 Total: -1.00 -31.58 385.33 -9.34 -40.93 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -6.29 Total: 12.55 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -3.86 Total: -9.02 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.10 Total: -54.13 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.13 Total: -12.75 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.58 -9.34 -40.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081165688.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.595 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds