Wall clock time and date at job start Sat Apr 11 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36290 * 119.93576 * 2 1 4 4 C 1.38910 * 121.17771 * 179.74588 * 3 2 1 5 5 C 1.38718 * 120.64615 * 0.55852 * 4 3 2 6 6 C 1.47455 * 120.37885 * 179.71819 * 5 4 3 7 7 O 1.21604 * 120.00332 * 174.02446 * 6 5 4 8 8 N 1.34778 * 119.99705 * 354.03089 * 6 5 4 9 9 C 1.46511 * 119.99891 * 179.97438 * 8 6 5 10 10 H 1.08999 * 110.91137 * 37.44644 * 9 8 6 11 11 C 1.54906 * 111.00317 * 273.54413 * 9 8 6 12 12 N 1.47424 * 104.83014 * 204.91618 * 11 9 8 13 13 C 1.36935 * 125.64593 * 204.09784 * 12 11 9 14 14 H 1.07994 * 120.00483 * 0.02562 * 13 12 11 15 15 C 1.38820 * 119.99956 * 180.02562 * 13 12 11 16 16 N 1.31620 * 119.99836 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00303 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46927 * 60.00238 * 17 15 13 19 19 H 1.48497 * 109.47414 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47429 * 300.00681 * 17 15 13 21 21 C 1.47020 * 108.70407 * 24.12966 * 12 11 9 22 22 C 1.54327 * 107.39999 * 358.86514 * 21 12 11 23 23 H 1.08998 * 110.71633 * 219.51530 * 22 21 12 24 24 O 1.42898 * 110.71830 * 96.24510 * 22 21 12 25 25 C 1.41747 * 119.24861 * 359.45152 * 5 4 3 26 26 C 1.40135 * 121.25960 * 180.29732 * 25 5 4 27 27 C 1.36255 * 119.68500 * 179.97438 * 26 25 5 28 28 C 1.39302 * 120.93875 * 0.02562 * 27 26 25 29 29 C 1.36132 * 120.94659 * 359.97438 * 28 27 26 30 30 C 1.40556 * 119.93708 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47421 * 269.97878 * 1 2 3 32 32 H 1.08999 * 109.47346 * 29.97691 * 1 2 3 33 33 H 1.08999 * 109.46988 * 149.97358 * 1 2 3 34 34 H 1.07995 * 119.41404 * 0.04588 * 3 2 1 35 35 H 1.07994 * 119.67929 * 180.28795 * 4 3 2 36 36 H 0.97000 * 120.00509 * 0.02562 * 8 6 5 37 37 H 1.09004 * 110.36357 * 86.08269 * 11 9 8 38 38 H 1.08999 * 110.36909 * 323.75591 * 11 9 8 39 39 H 0.97000 * 120.00026 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.88164 * 118.35606 * 21 12 11 41 41 H 1.08992 * 109.88548 * 239.36754 * 21 12 11 42 42 H 0.96704 * 114.00185 * 61.45330 * 24 22 21 43 43 H 1.07997 * 120.15765 * 359.95796 * 26 25 5 44 44 H 1.08005 * 119.53365 * 180.02562 * 27 26 25 45 45 H 1.07991 * 119.52383 * 180.02562 * 28 27 26 46 46 H 1.08005 * 120.17253 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1811 0.0000 4 6 3.5759 1.2112 0.0053 5 6 4.3087 0.0334 -0.0009 6 6 5.7827 0.0723 -0.0015 7 8 6.4183 -0.9592 0.1026 8 7 6.4257 1.2511 -0.1175 9 6 7.8902 1.2899 -0.1175 10 1 8.3020 0.4346 -0.6533 11 6 8.4439 1.3589 1.3276 12 7 9.7695 1.9900 1.1941 13 6 10.8104 1.8538 2.0734 14 1 10.6960 1.2404 2.9548 15 6 12.0127 2.5042 1.8317 16 7 12.1520 3.2522 0.7577 17 14 13.4324 2.3191 3.0315 18 1 13.8130 0.8870 3.1309 19 1 14.5943 3.1081 2.5492 20 1 13.0186 2.8152 4.3686 21 6 9.7886 2.7903 -0.0391 22 6 8.4129 2.6243 -0.7183 23 1 8.5238 2.5458 -1.7998 24 8 7.5456 3.7068 -0.3749 25 6 3.6245 -1.2080 -0.0009 26 6 4.3226 -2.4231 -0.0009 27 6 3.6324 -3.5979 -0.0003 28 6 2.2394 -3.6101 -0.0004 29 6 1.5292 -2.4488 -0.0005 30 6 2.2084 -1.2180 -0.0005 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3633 -0.8897 -0.5142 34 1 1.6366 2.1101 0.0008 35 1 4.0901 2.1608 0.0099 36 1 5.9188 2.0740 -0.2001 37 1 8.5412 0.3566 1.7448 38 1 7.7941 1.9701 1.9540 39 1 12.9921 3.7070 0.5890 40 1 9.9585 3.8395 0.2026 41 1 10.5753 2.4308 -0.7022 42 1 7.8675 4.5737 -0.6577 43 1 5.4026 -2.4283 -0.0015 44 1 4.1729 -4.5329 0.0001 45 1 1.7155 -4.5544 0.0005 46 1 0.4494 -2.4729 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083815789.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:10 Heat of formation + Delta-G solvation = -3.629162 kcal Electronic energy + Delta-G solvation = -29035.059348 eV Core-core repulsion = 25083.415542 eV Total energy + Delta-G solvation = -3951.643806 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.93041 -39.35615 -37.84961 -36.74729 -34.85770 -34.08562 -33.79559 -31.69177 -30.45292 -30.07896 -28.69276 -27.75090 -26.64251 -24.49530 -23.61226 -23.07684 -22.17845 -20.65049 -20.25260 -19.91076 -17.89976 -17.49069 -17.11768 -16.88861 -16.61682 -15.39620 -15.28287 -14.86763 -14.84492 -14.64968 -14.48689 -14.19377 -13.98489 -13.59648 -13.53686 -13.24267 -12.96998 -12.88238 -12.70244 -12.54494 -12.34592 -12.23564 -12.05898 -11.38797 -11.33775 -11.27761 -11.07157 -10.96886 -10.82718 -10.52417 -10.40675 -10.14339 -9.84226 -9.81816 -9.45315 -9.31134 -8.77872 -8.75866 -8.65292 -7.93223 -6.88392 -5.75545 -3.08395 0.14048 0.88314 1.72940 2.63193 3.26156 3.28790 3.41020 3.44703 3.46439 4.04764 4.38261 4.48949 4.51629 4.54313 4.63575 4.78074 4.85232 4.90605 5.09222 5.21843 5.26256 5.27377 5.33034 5.34564 5.36409 5.48144 5.53556 5.68769 5.72902 5.79002 5.85304 5.96375 6.02479 6.05869 6.11768 6.19562 6.21802 6.44289 6.50841 6.61327 6.66705 6.73377 6.90552 6.96315 7.31003 7.42639 7.70884 7.77597 8.04823 8.19082 8.42909 9.17332 9.77370 10.41724 11.36768 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019517 B = 0.002544 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.281868 B =11003.338499 C =11903.493255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.051 4.051 3 C -0.130 4.130 4 C -0.071 4.071 5 C -0.122 4.122 6 C 0.557 3.443 7 O -0.536 6.536 8 N -0.700 5.700 9 C 0.139 3.861 10 H 0.104 0.896 11 C 0.132 3.868 12 N -0.600 5.600 13 C -0.224 4.224 14 H 0.079 0.921 15 C -0.009 4.009 16 N -0.928 5.928 17 Si 0.915 3.085 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.154 3.846 22 C 0.068 3.932 23 H 0.063 0.937 24 O -0.569 6.569 25 C -0.011 4.011 26 C -0.109 4.109 27 C -0.122 4.122 28 C -0.114 4.114 29 C -0.117 4.117 30 C -0.058 4.058 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.406 0.594 37 H 0.046 0.954 38 H 0.026 0.974 39 H 0.253 0.747 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.381 0.619 43 H 0.172 0.828 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.937 -5.253 -5.637 25.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.051 4.051 3 C -0.148 4.148 4 C -0.090 4.090 5 C -0.125 4.125 6 C 0.345 3.655 7 O -0.415 6.415 8 N -0.351 5.351 9 C 0.034 3.966 10 H 0.122 0.878 11 C 0.004 3.996 12 N -0.327 5.327 13 C -0.352 4.352 14 H 0.097 0.903 15 C -0.205 4.205 16 N -0.576 5.576 17 Si 0.745 3.255 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.028 3.972 22 C 0.008 3.992 23 H 0.080 0.920 24 O -0.376 6.376 25 C -0.012 4.012 26 C -0.126 4.126 27 C -0.141 4.141 28 C -0.132 4.132 29 C -0.135 4.135 30 C -0.058 4.058 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.243 0.757 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.229 0.771 43 H 0.189 0.811 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -23.572 -6.363 -5.295 24.983 hybrid contribution 0.918 0.895 0.363 1.332 sum -22.654 -5.469 -4.932 23.821 Atomic orbital electron populations 1.20893 0.90774 1.03187 1.02766 1.19919 0.96096 0.92309 0.96789 1.20619 0.93795 0.97863 1.02518 1.21390 0.94259 0.97455 0.95858 1.19961 0.92953 0.93531 1.06069 1.18116 0.86833 0.83926 0.76670 1.90560 1.67977 1.32355 1.50630 1.45719 1.07691 1.08746 1.72911 1.22431 0.78212 0.96830 0.99138 0.87819 1.21832 0.87905 0.96789 0.93030 1.44270 1.08948 1.55046 1.24451 1.19051 0.89843 1.24906 1.01442 0.90300 1.24791 0.97924 0.99660 0.98139 1.69898 1.25388 1.35277 1.26996 0.86143 0.81636 0.77543 0.80132 1.21070 1.21590 1.21155 1.21874 0.90141 0.97110 0.88054 1.23554 0.92438 0.85986 0.97227 0.91963 1.86220 1.49480 1.17890 1.83997 1.17876 0.91917 0.92935 0.98495 1.22309 1.03820 0.90714 0.95734 1.21051 0.94067 0.98646 1.00292 1.20917 0.94517 0.98114 0.99678 1.20986 0.99614 0.91478 1.01419 1.17904 0.92238 0.93515 1.02105 0.90603 0.91034 0.91053 0.85323 0.85113 0.75700 0.93570 0.95657 0.93665 0.92903 0.92568 0.77107 0.81115 0.85922 0.86159 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 9.52 36.00 0.34 -0.42 16 2 C -0.05 -0.50 5.89 -104.45 -0.62 -1.11 16 3 C -0.13 -1.25 9.56 -40.03 -0.38 -1.63 16 4 C -0.07 -0.80 9.51 -39.16 -0.37 -1.17 16 5 C -0.12 -1.72 5.90 -104.63 -0.62 -2.34 16 6 C 0.56 9.14 7.72 -12.51 -0.10 9.05 16 7 O -0.54 -10.22 13.13 5.27 0.07 -10.15 16 8 N -0.70 -11.04 5.13 -52.66 -0.27 -11.31 16 9 C 0.14 2.60 3.20 -65.65 -0.21 2.39 16 10 H 0.10 2.03 7.73 -51.93 -0.40 1.63 16 11 C 0.13 2.92 6.92 -2.53 -0.02 2.91 16 12 N -0.60 -15.47 3.39 -170.08 -0.58 -16.05 16 13 C -0.22 -6.33 10.28 -15.06 -0.15 -6.49 16 14 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 15 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 16 N -0.93 -26.78 10.31 55.49 0.57 -26.21 16 17 Si 0.92 22.24 29.55 -169.99 -5.02 17.22 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 C 0.15 3.57 5.13 -3.06 -0.02 3.56 16 22 C 0.07 1.21 4.22 -24.76 -0.10 1.10 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 24 O -0.57 -8.88 12.15 -35.23 -0.43 -9.31 16 25 C -0.01 -0.16 5.76 -106.56 -0.61 -0.78 16 26 C -0.11 -1.54 9.21 -39.58 -0.36 -1.91 16 27 C -0.12 -1.41 9.95 -39.90 -0.40 -1.81 16 28 C -0.11 -1.13 9.95 -39.94 -0.40 -1.52 16 29 C -0.12 -1.16 9.27 -39.46 -0.37 -1.52 16 30 C -0.06 -0.68 5.74 -106.86 -0.61 -1.29 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.07 0.39 6.39 -51.93 -0.33 0.06 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.13 1.25 6.42 -52.49 -0.34 0.92 16 36 H 0.41 5.62 5.63 -40.82 -0.23 5.39 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 41 H 0.06 1.44 7.37 -51.93 -0.38 1.06 16 42 H 0.38 4.64 9.09 45.56 0.41 5.05 16 43 H 0.17 2.74 4.87 -52.60 -0.26 2.48 16 44 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 45 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.13 0.90 6.34 -52.48 -0.33 0.56 16 LS Contribution 370.43 15.07 5.58 5.58 Total: -1.00 -33.17 370.43 -10.34 -43.51 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.17 Total: 10.05 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -5.09 Total: -3.34 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.28 Total: -53.56 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.36 Total: -19.45 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.17 -10.34 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083815789.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.879 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds