Wall clock time and date at job start Sat Apr 11 2020 06:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36290 * 119.93576 * 2 1 4 4 C 1.38910 * 121.17771 * 179.74588 * 3 2 1 5 5 C 1.38718 * 120.64615 * 0.55852 * 4 3 2 6 6 C 1.47455 * 120.37885 * 179.71819 * 5 4 3 7 7 O 1.21604 * 120.00332 * 174.02446 * 6 5 4 8 8 N 1.34778 * 119.99705 * 354.03089 * 6 5 4 9 9 C 1.46511 * 119.99891 * 179.97438 * 8 6 5 10 10 H 1.08999 * 110.91137 * 37.44644 * 9 8 6 11 11 C 1.54906 * 111.00317 * 273.54413 * 9 8 6 12 12 N 1.47424 * 104.83014 * 204.91618 * 11 9 8 13 13 C 1.36935 * 125.64593 * 204.09784 * 12 11 9 14 14 H 1.07994 * 120.00483 * 0.02562 * 13 12 11 15 15 C 1.38820 * 119.99956 * 180.02562 * 13 12 11 16 16 N 1.31620 * 119.99836 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00303 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46927 * 60.00238 * 17 15 13 19 19 H 1.48497 * 109.47414 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47429 * 300.00681 * 17 15 13 21 21 C 1.47020 * 108.70407 * 24.12966 * 12 11 9 22 22 C 1.54327 * 107.39999 * 358.86514 * 21 12 11 23 23 H 1.08998 * 110.71633 * 219.51530 * 22 21 12 24 24 O 1.42898 * 110.71830 * 96.24510 * 22 21 12 25 25 C 1.41747 * 119.24861 * 359.45152 * 5 4 3 26 26 C 1.40135 * 121.25960 * 180.29732 * 25 5 4 27 27 C 1.36255 * 119.68500 * 179.97438 * 26 25 5 28 28 C 1.39302 * 120.93875 * 0.02562 * 27 26 25 29 29 C 1.36132 * 120.94659 * 359.97438 * 28 27 26 30 30 C 1.40556 * 119.93708 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47421 * 269.97878 * 1 2 3 32 32 H 1.08999 * 109.47346 * 29.97691 * 1 2 3 33 33 H 1.08999 * 109.46988 * 149.97358 * 1 2 3 34 34 H 1.07995 * 119.41404 * 0.04588 * 3 2 1 35 35 H 1.07994 * 119.67929 * 180.28795 * 4 3 2 36 36 H 0.97000 * 120.00509 * 0.02562 * 8 6 5 37 37 H 1.09004 * 110.36357 * 86.08269 * 11 9 8 38 38 H 1.08999 * 110.36909 * 323.75591 * 11 9 8 39 39 H 0.97000 * 120.00026 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.88164 * 118.35606 * 21 12 11 41 41 H 1.08992 * 109.88548 * 239.36754 * 21 12 11 42 42 H 0.96704 * 114.00185 * 61.45330 * 24 22 21 43 43 H 1.07997 * 120.15765 * 359.95796 * 26 25 5 44 44 H 1.08005 * 119.53365 * 180.02562 * 27 26 25 45 45 H 1.07991 * 119.52383 * 180.02562 * 28 27 26 46 46 H 1.08005 * 120.17253 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1811 0.0000 4 6 3.5759 1.2112 0.0053 5 6 4.3087 0.0334 -0.0009 6 6 5.7827 0.0723 -0.0015 7 8 6.4183 -0.9592 0.1026 8 7 6.4257 1.2511 -0.1175 9 6 7.8902 1.2899 -0.1175 10 1 8.3020 0.4346 -0.6533 11 6 8.4439 1.3589 1.3276 12 7 9.7695 1.9900 1.1941 13 6 10.8104 1.8538 2.0734 14 1 10.6960 1.2404 2.9548 15 6 12.0127 2.5042 1.8317 16 7 12.1520 3.2522 0.7577 17 14 13.4324 2.3191 3.0315 18 1 13.8130 0.8870 3.1309 19 1 14.5943 3.1081 2.5492 20 1 13.0186 2.8152 4.3686 21 6 9.7886 2.7903 -0.0391 22 6 8.4129 2.6243 -0.7183 23 1 8.5238 2.5458 -1.7998 24 8 7.5456 3.7068 -0.3749 25 6 3.6245 -1.2080 -0.0009 26 6 4.3226 -2.4231 -0.0009 27 6 3.6324 -3.5979 -0.0003 28 6 2.2394 -3.6101 -0.0004 29 6 1.5292 -2.4488 -0.0005 30 6 2.2084 -1.2180 -0.0005 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3633 -0.8897 -0.5142 34 1 1.6366 2.1101 0.0008 35 1 4.0901 2.1608 0.0099 36 1 5.9188 2.0740 -0.2001 37 1 8.5412 0.3566 1.7448 38 1 7.7941 1.9701 1.9540 39 1 12.9921 3.7070 0.5890 40 1 9.9585 3.8395 0.2026 41 1 10.5753 2.4308 -0.7022 42 1 7.8675 4.5737 -0.6577 43 1 5.4026 -2.4283 -0.0015 44 1 4.1729 -4.5329 0.0001 45 1 1.7155 -4.5544 0.0005 46 1 0.4494 -2.4729 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083815789.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:09 Heat of formation + Delta-G solvation = -26.115666 kcal Electronic energy + Delta-G solvation = -29036.034436 eV Core-core repulsion = 25083.415542 eV Total energy + Delta-G solvation = -3952.618894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.90462 -40.63578 -39.32982 -37.56870 -36.47870 -35.53487 -34.70150 -33.58494 -31.29825 -30.98300 -30.29253 -29.12342 -27.94781 -26.34917 -24.48093 -23.92672 -23.31111 -22.33935 -21.68919 -21.21826 -19.33922 -18.64715 -18.44047 -18.09060 -17.70038 -16.90043 -16.67290 -16.25479 -16.07978 -15.81383 -15.80191 -15.33681 -14.95042 -14.81489 -14.75953 -14.42009 -14.34523 -14.23885 -13.94769 -13.73064 -13.52173 -13.20535 -12.95885 -12.85611 -12.80279 -12.74219 -12.32848 -12.24881 -12.17012 -12.11418 -11.90501 -11.89026 -11.81595 -10.92436 -10.78596 -10.69306 -10.60006 -10.17244 -9.61779 -8.97872 -8.78664 -7.90771 -5.26749 -0.73876 0.04773 0.80418 1.43838 1.47164 1.53381 1.71616 1.98375 2.22907 2.47187 3.11248 3.16386 3.27915 3.51518 3.66062 3.74866 3.81139 3.85382 3.90605 3.92888 4.08582 4.13853 4.22787 4.39591 4.40659 4.44182 4.57442 4.63638 4.67725 4.73163 4.80026 4.87623 4.94525 5.01147 5.12729 5.20447 5.25927 5.30057 5.34051 5.38742 5.43449 5.48283 5.62314 5.65892 5.68490 5.87522 6.07675 6.12242 6.52174 6.84669 7.04503 7.19309 7.68014 8.31884 9.18988 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019517 B = 0.002544 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.281868 B =11003.338499 C =11903.493255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.037 4.037 3 C -0.140 4.140 4 C -0.055 4.055 5 C -0.162 4.162 6 C 0.554 3.446 7 O -0.572 6.572 8 N -0.690 5.690 9 C 0.152 3.848 10 H 0.091 0.909 11 C 0.134 3.866 12 N -0.621 5.621 13 C -0.249 4.249 14 H 0.075 0.925 15 C -0.059 4.059 16 N -0.947 5.947 17 Si 0.980 3.020 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.160 3.840 22 C 0.094 3.906 23 H 0.094 0.906 24 O -0.564 6.564 25 C -0.030 4.030 26 C -0.151 4.151 27 C -0.118 4.118 28 C -0.123 4.123 29 C -0.105 4.105 30 C -0.080 4.080 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.163 0.837 35 H 0.146 0.854 36 H 0.417 0.583 37 H 0.026 0.974 38 H 0.023 0.977 39 H 0.251 0.749 40 H 0.029 0.971 41 H 0.026 0.974 42 H 0.399 0.601 43 H 0.141 0.859 44 H 0.135 0.865 45 H 0.154 0.846 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.750 -4.752 -5.920 28.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.037 4.037 3 C -0.158 4.158 4 C -0.074 4.074 5 C -0.165 4.165 6 C 0.344 3.656 7 O -0.454 6.454 8 N -0.342 5.342 9 C 0.046 3.954 10 H 0.109 0.891 11 C 0.007 3.993 12 N -0.348 5.348 13 C -0.378 4.378 14 H 0.093 0.907 15 C -0.252 4.252 16 N -0.596 5.596 17 Si 0.808 3.192 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.204 1.204 21 C 0.034 3.966 22 C 0.034 3.966 23 H 0.111 0.889 24 O -0.373 6.373 25 C -0.031 4.031 26 C -0.169 4.169 27 C -0.136 4.136 28 C -0.141 4.141 29 C -0.123 4.123 30 C -0.080 4.080 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.181 0.819 35 H 0.164 0.836 36 H 0.257 0.743 37 H 0.045 0.955 38 H 0.041 0.959 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.044 0.956 42 H 0.251 0.749 43 H 0.158 0.842 44 H 0.152 0.848 45 H 0.171 0.829 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -27.429 -5.836 -5.587 28.594 hybrid contribution 1.963 0.712 0.477 2.142 sum -25.466 -5.124 -5.109 26.474 Atomic orbital electron populations 1.21023 0.87758 1.04807 1.04029 1.20412 0.98153 0.91425 0.93741 1.21005 0.93011 0.99429 1.02325 1.21668 0.95345 0.96905 0.93458 1.19792 0.91203 0.94999 1.10486 1.18636 0.88178 0.83259 0.75523 1.90561 1.69113 1.33583 1.52174 1.45519 1.06203 1.09348 1.73087 1.22014 0.80001 0.97065 0.96370 0.89119 1.21843 0.86803 0.95211 0.95455 1.44542 1.09591 1.55741 1.24884 1.19364 0.91151 1.25192 1.02111 0.90730 1.25610 1.00180 0.99499 0.99948 1.70094 1.25630 1.35640 1.28196 0.85133 0.78354 0.77529 0.78180 1.20561 1.21361 1.20388 1.21743 0.92786 0.95071 0.86990 1.23176 0.89304 0.86140 0.98018 0.88874 1.86184 1.48424 1.18513 1.84212 1.18094 0.93397 0.92648 0.98960 1.22124 1.02727 0.92446 0.99563 1.21306 0.95441 0.98165 0.98646 1.21258 0.93561 0.99843 0.99405 1.21441 1.01332 0.90554 0.98958 1.18238 0.91325 0.95454 1.02959 0.89234 0.89150 0.89822 0.81914 0.83642 0.74343 0.95543 0.95912 0.94022 0.95242 0.95574 0.74932 0.84184 0.84759 0.82870 0.81934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.52 71.24 0.68 -0.25 16 2 C -0.04 -0.60 5.89 -19.75 -0.12 -0.71 16 3 C -0.14 -2.24 9.56 21.98 0.21 -2.03 16 4 C -0.05 -1.16 9.51 22.55 0.21 -0.94 16 5 C -0.16 -4.65 5.90 -19.87 -0.12 -4.77 16 6 C 0.55 19.18 7.72 86.67 0.67 19.85 16 7 O -0.57 -23.79 13.13 -4.04 -0.05 -23.84 16 8 N -0.69 -22.12 5.13 -438.77 -2.25 -24.37 16 9 C 0.15 5.84 3.20 46.47 0.15 5.98 16 10 H 0.09 3.74 7.73 -2.39 -0.02 3.73 16 11 C 0.13 6.21 6.92 86.85 0.60 6.82 16 12 N -0.62 -33.33 3.39 -692.00 -2.35 -35.68 16 13 C -0.25 -14.61 10.28 84.04 0.86 -13.74 16 14 H 0.07 4.28 7.83 -2.91 -0.02 4.26 16 15 C -0.06 -3.40 5.49 84.86 0.47 -2.94 16 16 N -0.95 -56.16 10.31 21.65 0.22 -55.93 16 17 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 19 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 C 0.16 7.66 5.13 86.73 0.44 8.10 16 22 C 0.09 3.31 4.22 31.87 0.13 3.45 16 23 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 24 O -0.56 -16.70 12.15 -148.98 -1.81 -18.51 16 25 C -0.03 -0.87 5.76 -21.12 -0.12 -0.99 16 26 C -0.15 -4.60 9.21 22.27 0.21 -4.39 16 27 C -0.12 -2.75 9.95 22.06 0.22 -2.53 16 28 C -0.12 -2.16 9.95 22.04 0.22 -1.94 16 29 C -0.11 -1.76 9.27 22.35 0.21 -1.55 16 30 C -0.08 -1.73 5.74 -21.31 -0.12 -1.85 16 31 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.09 0.42 8.08 -2.39 -0.02 0.40 16 33 H 0.08 0.47 6.39 -2.39 -0.02 0.46 16 34 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 35 H 0.15 2.49 6.42 -2.91 -0.02 2.47 16 36 H 0.42 11.19 5.63 -92.71 -0.52 10.67 16 37 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.03 1.53 7.42 -2.39 -0.02 1.52 16 41 H 0.03 1.40 7.37 -2.39 -0.02 1.38 16 42 H 0.40 8.90 9.09 -74.05 -0.67 8.23 16 43 H 0.14 5.08 4.87 -4.68 -0.02 5.06 16 44 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 45 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 46 H 0.16 1.48 6.34 -2.91 -0.02 1.46 16 Total: -1.00 -77.20 370.43 0.43 -76.77 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -0.16 Total: 27.42 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 4.80 Total: 5.56 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -4.38 Total: -115.98 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -1.86 Total: -42.36 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -77.20 0.43 -76.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083815789.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.658 kcal (2) G-P(sol) polarization free energy of solvation -77.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds