Wall clock time and date at job start Sat Apr 11 2020 06:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38841 * 119.78049 * 2 1 4 4 C 1.37796 * 120.74173 * 180.02562 * 3 2 1 5 5 C 1.39027 * 119.85866 * 359.97043 * 4 3 2 6 6 O 1.34706 * 133.24653 * 180.02562 * 5 4 3 7 7 C 1.34951 * 110.86880 * 179.97438 * 6 5 4 8 8 C 1.46977 * 125.13572 * 180.02562 * 7 6 5 9 9 O 1.21651 * 119.99724 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99860 * 0.02703 * 8 7 6 11 11 C 1.47805 * 135.01424 * 359.97438 * 10 8 7 12 12 C 1.54647 * 85.79544 * 153.82934 * 11 10 8 13 13 H 1.08998 * 114.44222 * 140.41719 * 12 11 10 14 14 C 1.53008 * 110.83740 * 270.23214 * 12 11 10 15 15 C 1.53102 * 109.44792 * 143.88186 * 14 12 11 16 16 N 1.46613 * 108.01391 * 301.03039 * 15 14 12 17 17 C 1.36941 * 119.88899 * 237.30838 * 16 15 14 18 18 H 1.07996 * 120.00376 * 151.66498 * 17 16 15 19 19 C 1.38814 * 120.00017 * 331.65794 * 17 16 15 20 20 N 1.31620 * 119.99653 * 335.22751 * 19 17 16 21 21 Si 1.86802 * 119.99869 * 155.21653 * 19 17 16 22 22 H 1.48499 * 109.46704 * 180.02562 * 21 19 17 23 23 H 1.48495 * 109.46719 * 60.00812 * 21 19 17 24 24 H 1.48496 * 109.47322 * 300.00412 * 21 19 17 25 25 C 1.45671 * 120.22259 * 57.57501 * 16 15 14 26 26 C 1.46813 * 135.01237 * 180.02562 * 10 8 7 27 27 H 1.08996 * 111.56583 * 94.45330 * 26 10 8 28 28 C 1.35813 * 109.73397 * 0.26314 * 7 6 5 29 29 C 1.40733 * 119.15782 * 0.02752 * 5 4 3 30 30 C 1.36620 * 119.77480 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47575 * 269.98565 * 1 2 3 32 32 H 1.09007 * 109.46502 * 29.98454 * 1 2 3 33 33 H 1.08994 * 109.47233 * 149.97801 * 1 2 3 34 34 H 1.07996 * 119.62745 * 0.02562 * 3 2 1 35 35 H 1.08001 * 120.07227 * 180.02562 * 4 3 2 36 36 H 1.09006 * 113.82090 * 39.60848 * 11 10 8 37 37 H 1.09000 * 113.82193 * 268.05276 * 11 10 8 38 38 H 1.08995 * 109.47473 * 23.89452 * 14 12 11 39 39 H 1.08995 * 109.48284 * 263.87909 * 14 12 11 40 40 H 1.08999 * 109.75607 * 181.39518 * 15 14 12 41 41 H 1.09000 * 109.79521 * 60.68056 * 15 14 12 42 42 H 0.96995 * 120.00599 * 354.28155 * 20 19 17 43 43 H 1.09006 * 108.71448 * 81.49161 * 25 16 15 44 44 H 1.08995 * 108.72259 * 199.51601 * 25 16 15 45 45 H 1.07990 * 126.96338 * 179.73925 * 28 7 6 46 46 H 1.08002 * 120.14851 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.2051 0.0000 4 6 3.5744 1.2282 -0.0005 5 6 4.2867 0.0342 -0.0004 6 8 5.6022 -0.2556 -0.0004 7 6 5.8003 -1.5905 0.0002 8 6 7.1134 -2.2508 0.0010 9 8 7.1835 -3.4653 0.0011 10 7 8.2398 -1.5107 0.0016 11 6 8.5397 -0.0634 0.0013 12 6 9.8715 -0.4550 0.6827 13 1 10.7375 0.1107 0.3389 14 6 9.7201 -0.4699 2.2052 15 6 10.5627 -1.6065 2.7902 16 7 10.0961 -2.8659 2.2020 17 6 9.6587 -3.8777 3.0145 18 1 8.9225 -4.5804 2.6532 19 6 10.1617 -4.0003 4.3024 20 7 11.3477 -3.5102 4.5951 21 14 9.1553 -4.8607 5.6202 22 1 9.9098 -4.8586 6.8993 23 1 8.8893 -6.2611 5.2042 24 1 7.8669 -4.1457 5.8047 25 6 10.1017 -3.0465 0.7566 26 6 9.6775 -1.8079 0.0019 27 1 10.0861 -1.8115 -1.0085 28 6 4.6031 -2.2318 -0.0052 29 6 3.5825 -1.1843 -0.0004 30 6 2.1855 -1.1858 -0.0005 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3632 0.8902 -0.5136 33 1 -0.3633 -0.8897 -0.5141 34 1 1.6470 2.1347 0.0004 35 1 4.0998 2.1717 -0.0001 36 1 7.8762 0.5239 0.6363 37 1 8.6630 0.3605 -0.9953 38 1 8.6727 -0.6235 2.4648 39 1 10.0600 0.4817 2.6137 40 1 10.4391 -1.6373 3.8727 41 1 11.6132 -1.4518 2.5438 42 1 11.9050 -3.1376 3.8942 43 1 11.1080 -3.3240 0.4426 44 1 9.4222 -3.8601 0.5030 45 1 4.4382 -3.2990 -0.0101 46 1 1.6442 -2.1204 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084852304.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:21 Heat of formation + Delta-G solvation = 37.693510 kcal Electronic energy + Delta-G solvation = -29754.977841 eV Core-core repulsion = 25805.125921 eV Total energy + Delta-G solvation = -3949.851920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.61761 -41.95342 -39.57103 -39.12595 -37.46101 -33.97719 -33.78750 -33.16301 -32.75847 -31.30425 -30.03870 -28.62812 -27.77677 -25.81634 -25.46849 -24.15362 -22.96408 -22.61881 -22.58890 -21.46050 -19.87065 -19.46775 -18.55495 -18.35313 -17.70745 -17.27827 -16.95017 -16.36468 -16.14195 -16.02698 -15.74843 -15.46700 -15.17837 -15.11642 -14.88138 -14.55585 -14.45184 -14.27337 -14.13757 -14.11607 -13.60193 -13.36257 -13.02590 -12.89701 -12.74720 -12.65686 -12.63503 -12.56014 -12.11163 -11.96654 -11.95022 -11.82055 -11.61027 -11.38421 -11.36205 -10.93357 -10.53098 -9.88950 -9.50416 -9.32538 -8.93444 -8.29256 -5.43804 -0.54892 0.25695 0.73606 1.24591 1.49716 1.56368 1.73026 1.77067 1.98773 2.58073 2.60601 3.05528 3.12782 3.30239 3.51492 3.52694 3.70653 3.81680 3.83102 3.94367 3.98006 4.18830 4.21122 4.23199 4.34150 4.38246 4.43072 4.46591 4.59227 4.63133 4.71630 4.76085 4.78491 4.89319 4.93624 4.94307 5.02456 5.07234 5.08353 5.13899 5.22207 5.23080 5.25720 5.49814 5.53967 5.58405 5.81183 5.97723 6.37969 6.50649 6.84054 7.06895 7.77365 8.13525 8.94955 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013428 B = 0.003272 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.693486 B = 8555.387275 C = 9544.019416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.103 4.103 3 C -0.074 4.074 4 C -0.111 4.111 5 C 0.039 3.961 6 O -0.184 6.184 7 C -0.031 4.031 8 C 0.607 3.393 9 O -0.560 6.560 10 N -0.625 5.625 11 C 0.113 3.887 12 C -0.097 4.097 13 H 0.139 0.861 14 C -0.109 4.109 15 C 0.151 3.849 16 N -0.607 5.607 17 C -0.351 4.351 18 H 0.025 0.975 19 C -0.068 4.068 20 N -0.934 5.934 21 Si 1.107 2.893 22 H -0.279 1.279 23 H -0.282 1.282 24 H -0.288 1.288 25 C 0.142 3.858 26 C 0.126 3.874 27 H 0.120 0.880 28 C -0.127 4.127 29 C -0.158 4.158 30 C -0.076 4.076 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.175 0.825 35 H 0.158 0.842 36 H 0.086 0.914 37 H 0.126 0.874 38 H 0.032 0.968 39 H 0.092 0.908 40 H 0.047 0.953 41 H 0.023 0.977 42 H 0.257 0.743 43 H 0.022 0.978 44 H 0.036 0.964 45 H 0.166 0.834 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.122 16.864 -13.231 28.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.104 4.104 3 C -0.091 4.091 4 C -0.129 4.129 5 C -0.009 4.009 6 O -0.086 6.086 7 C -0.081 4.081 8 C 0.397 3.603 9 O -0.441 6.441 10 N -0.358 5.358 11 C -0.007 4.007 12 C -0.115 4.115 13 H 0.157 0.843 14 C -0.148 4.148 15 C 0.025 3.975 16 N -0.331 5.331 17 C -0.481 4.481 18 H 0.043 0.957 19 C -0.265 4.265 20 N -0.576 5.576 21 Si 0.932 3.068 22 H -0.204 1.204 23 H -0.208 1.208 24 H -0.215 1.215 25 C 0.016 3.984 26 C 0.023 3.977 27 H 0.138 0.862 28 C -0.148 4.148 29 C -0.159 4.159 30 C -0.094 4.094 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.192 0.808 35 H 0.176 0.824 36 H 0.104 0.896 37 H 0.143 0.857 38 H 0.051 0.949 39 H 0.110 0.890 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.067 0.933 43 H 0.039 0.961 44 H 0.055 0.945 45 H 0.184 0.816 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.071 15.908 -11.646 26.744 hybrid contribution 0.389 -0.767 -1.510 1.738 sum -17.682 15.141 -13.156 26.739 Atomic orbital electron populations 1.20837 0.88031 1.04253 1.03440 1.19979 0.98272 0.92061 1.00039 1.21398 0.91869 0.99482 0.96365 1.20389 0.93835 0.94416 1.04287 1.20346 0.80603 0.96955 1.03010 1.83997 1.25406 1.22646 1.76560 1.21747 0.95094 0.81259 1.09962 1.16537 0.81439 0.85246 0.77125 1.90846 1.85971 1.13887 1.53387 1.49912 1.05102 1.10692 1.70084 1.23877 0.94251 0.80096 1.02526 1.22879 0.99369 0.94367 0.94913 0.84328 1.21752 0.99253 0.99179 0.94599 1.20820 0.94641 0.84770 0.97237 1.43752 1.76288 1.12359 1.00751 1.20031 1.19237 1.09933 0.98901 0.95714 1.26987 0.97291 1.01425 1.00784 1.70887 1.07562 1.42469 1.36667 0.82957 0.74106 0.75434 0.74305 1.20439 1.20786 1.21452 1.20273 0.97602 0.96107 0.84427 1.22660 0.78184 0.96525 1.00337 0.86221 1.22913 0.89858 1.00636 1.01396 1.20058 0.95547 0.91869 1.08393 1.20518 0.90047 1.00094 0.98739 0.90187 0.89384 0.90882 0.80751 0.82390 0.89565 0.85655 0.94882 0.88971 0.93459 0.95888 0.93265 0.96065 0.94527 0.81604 0.83975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.00 71.24 0.71 -0.18 16 2 C -0.10 -1.55 5.85 -20.10 -0.12 -1.66 16 3 C -0.07 -0.97 9.66 22.31 0.22 -0.76 16 4 C -0.11 -1.99 10.07 22.35 0.23 -1.76 16 5 C 0.04 1.02 7.41 23.07 0.17 1.19 16 6 O -0.18 -5.62 9.01 -12.94 -0.12 -5.74 16 7 C -0.03 -1.09 7.02 24.00 0.17 -0.92 16 8 C 0.61 24.96 7.96 86.53 0.69 25.65 16 9 O -0.56 -27.63 15.96 -4.19 -0.07 -27.70 16 10 N -0.63 -21.99 3.35 -826.57 -2.77 -24.76 16 11 C 0.11 2.76 7.28 86.33 0.63 3.39 16 12 C -0.10 -2.65 4.39 -10.31 -0.05 -2.69 16 13 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 14 C -0.11 -3.87 5.66 30.63 0.17 -3.70 16 15 C 0.15 7.12 4.65 86.39 0.40 7.52 16 16 N -0.61 -32.61 2.85 -707.19 -2.02 -34.63 16 17 C -0.35 -21.71 9.42 84.03 0.79 -20.92 16 18 H 0.02 1.66 7.90 -2.91 -0.02 1.64 16 19 C -0.07 -4.12 4.66 84.86 0.40 -3.72 16 20 N -0.93 -58.34 12.33 21.65 0.27 -58.08 16 21 Si 1.11 55.21 29.99 68.60 2.06 57.26 16 22 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 24 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 25 C 0.14 6.61 6.19 85.92 0.53 7.14 16 26 C 0.13 4.30 4.23 43.86 0.19 4.48 16 27 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 28 C -0.13 -4.14 10.81 23.79 0.26 -3.88 16 29 C -0.16 -4.30 6.38 -20.23 -0.13 -4.43 16 30 C -0.08 -1.55 9.68 22.25 0.22 -1.33 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.09 0.40 8.08 -2.38 -0.02 0.38 16 33 H 0.07 0.54 8.08 -2.39 -0.02 0.53 16 34 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16 35 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.09 2.11 7.30 -2.38 -0.02 2.10 16 37 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.03 1.35 7.69 -2.39 -0.02 1.33 16 39 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.05 2.59 6.07 -2.39 -0.01 2.57 16 41 H 0.02 1.06 7.99 -2.39 -0.02 1.04 16 42 H 0.26 16.16 6.78 -92.71 -0.63 15.53 16 43 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.04 1.95 6.35 -2.39 -0.02 1.94 16 45 H 0.17 5.21 8.06 -2.92 -0.02 5.19 16 46 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -83.42 373.45 3.96 -79.46 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 1.14 Total: 10.78 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 5.47 Total: 3.41 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -4.52 Total: -117.46 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -0.18 Total: -33.44 kcal Atomic # 14 Polarization: 55.21 SS G_CDS: 2.06 Total: 57.26 kcal Total: -83.42 3.96 -79.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084852304.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.153 kcal (2) G-P(sol) polarization free energy of solvation -83.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds