Wall clock time and date at job start Sat Apr 11 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 115.54763 * 2 1 4 4 O 1.21278 * 119.99866 * 214.41884 * 3 2 1 5 5 N 1.34781 * 120.00101 * 34.41678 * 3 2 1 6 6 C 1.46499 * 119.99874 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.46840 * 85.00543 * 6 5 3 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.46963 * 299.99499 * 8 7 6 10 10 N 1.46496 * 109.47313 * 180.02562 * 9 8 7 11 11 C 1.34773 * 120.00354 * 84.99862 * 10 9 8 12 12 O 1.21282 * 119.99911 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00217 * 180.02562 * 11 10 9 14 14 S 1.81004 * 109.47029 * 180.02562 * 13 11 10 15 15 C 1.76198 * 99.99787 * 180.02562 * 14 13 11 16 16 H 1.08003 * 120.00403 * 0.02562 * 15 14 13 17 17 C 1.38804 * 119.99921 * 179.97438 * 15 14 13 18 18 N 1.31628 * 119.99687 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99755 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47423 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46890 * 120.00592 * 19 17 15 22 22 H 1.48501 * 109.46771 * 239.99868 * 19 17 15 23 23 C 1.52997 * 109.47092 * 60.00194 * 9 8 7 24 24 C 1.53002 * 109.46799 * 205.00309 * 6 5 3 25 25 C 1.52995 * 117.50170 * 145.66868 * 2 1 3 26 26 C 1.52998 * 117.49845 * 214.33124 * 2 1 3 27 27 H 1.08997 * 109.47112 * 85.58237 * 1 2 3 28 28 H 1.09006 * 109.46409 * 205.58382 * 1 2 3 29 29 H 1.08997 * 109.46907 * 325.57922 * 1 2 3 30 30 H 0.97002 * 119.99716 * 0.02562 * 5 3 2 31 31 H 1.09002 * 109.47391 * 325.00213 * 6 5 3 32 32 H 1.09001 * 109.47194 * 299.99493 * 7 6 5 33 33 H 1.08992 * 109.47399 * 59.99666 * 7 6 5 34 34 H 1.09000 * 109.47437 * 180.02562 * 8 7 6 35 35 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 36 36 H 1.09002 * 109.47067 * 300.00341 * 9 8 7 37 37 H 0.97007 * 119.99693 * 264.99991 * 10 9 8 38 38 H 1.09005 * 109.47169 * 300.00332 * 13 11 10 39 39 H 1.08999 * 109.47030 * 60.00081 * 13 11 10 40 40 H 0.97003 * 119.99493 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.47375 * 180.02562 * 23 9 8 42 42 H 1.09002 * 109.47497 * 59.99850 * 23 9 8 43 43 H 1.09002 * 109.47075 * 299.99543 * 24 6 5 44 44 H 1.08996 * 109.47407 * 60.00500 * 24 6 5 45 45 H 1.08996 * 117.49860 * 215.00107 * 25 2 1 46 46 H 1.09002 * 117.50190 * 0.02562 * 25 2 1 47 47 H 1.09002 * 117.49893 * 359.97438 * 26 2 1 48 48 H 1.09005 * 117.49458 * 144.99140 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 8 3.2232 1.5331 -0.5937 5 7 1.6019 2.3830 0.6597 6 6 2.2340 3.7046 0.6602 7 6 1.8152 4.4706 -0.5963 8 6 2.4758 5.8506 -0.5962 9 6 2.0339 6.6274 0.6457 10 7 2.6660 7.9490 0.6455 11 6 2.1004 8.9665 -0.0336 12 8 1.0679 8.7881 -0.6443 13 6 2.7510 10.3259 -0.0342 14 16 1.7587 11.4692 -1.0264 15 6 2.7222 12.9349 -0.8591 16 1 3.6286 12.9213 -0.2719 17 6 2.3170 14.1067 -1.4829 18 7 1.2126 14.1232 -2.1990 19 14 3.3389 15.6604 -1.3061 20 1 4.5241 15.3794 -0.4568 21 1 3.7876 16.1130 -2.6474 22 1 2.5174 16.7239 -0.6742 23 6 2.4527 5.8614 1.9021 24 6 1.7916 4.4810 1.9021 25 6 2.2365 -1.1206 0.7653 26 6 2.2365 -1.1207 -0.7654 27 1 -0.3633 0.0792 -1.0246 28 1 -0.3632 -0.9270 0.4438 29 1 -0.3633 0.8477 0.5809 30 1 0.7676 2.2441 1.1348 31 1 3.3178 3.5890 0.6709 32 1 2.1304 3.9174 -1.4811 33 1 0.7314 4.5861 -0.6071 34 1 2.1772 6.3965 -1.4911 35 1 3.5596 5.7346 -0.5856 36 1 0.9502 6.7434 0.6351 37 1 3.4917 8.0917 1.1343 38 1 2.8181 10.6970 0.9886 39 1 3.7517 10.2495 -0.4594 40 1 0.9293 14.9422 -2.6346 41 1 2.1375 6.4146 2.7869 42 1 3.5364 5.7454 1.9127 43 1 0.7077 4.5967 1.8913 44 1 2.0899 3.9354 2.7972 45 1 3.1714 -0.8745 1.2688 46 1 1.6114 -1.8583 1.2686 47 1 1.6112 -1.8583 -1.2686 48 1 3.1714 -0.8745 -1.2690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703999727.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:49 Heat of formation + Delta-G solvation = -72.271221 kcal Electronic energy + Delta-G solvation = -26594.926955 eV Core-core repulsion = 22775.750557 eV Total energy + Delta-G solvation = -3819.176397 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.74964 -39.67531 -38.20741 -36.87105 -35.03651 -33.04748 -32.42335 -31.08613 -30.07199 -29.06309 -27.65465 -25.47747 -24.12003 -23.10787 -22.94380 -21.94379 -20.55040 -20.25048 -19.55483 -17.84184 -17.43629 -16.73727 -16.30897 -16.26778 -15.51791 -15.13223 -15.00754 -14.80177 -14.66122 -14.25919 -14.14747 -13.98417 -13.61482 -13.36763 -13.14339 -13.03653 -12.83320 -12.76081 -12.58743 -12.47605 -12.05740 -11.98539 -11.78572 -11.51506 -11.42270 -11.06812 -11.03953 -11.01308 -10.76696 -10.71661 -10.65560 -10.47811 -10.06018 -9.79629 -9.38744 -9.32674 -9.07254 -8.84914 -8.22386 -6.49206 -6.21442 -3.91661 2.15399 2.71421 3.05327 3.11179 3.21872 3.28730 3.33516 3.35292 3.72274 4.12800 4.20868 4.23112 4.34799 4.36863 4.40884 4.47892 4.79773 4.81906 4.95871 5.10502 5.12214 5.13345 5.13962 5.15344 5.19030 5.20209 5.25014 5.28774 5.42879 5.45305 5.48173 5.59185 5.63927 5.69413 5.70976 5.77436 5.85449 5.90470 6.00276 6.12267 6.15548 6.16722 6.26942 6.69137 7.15235 7.60402 7.74178 7.90126 8.35905 8.64024 9.24139 10.86064 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.036629 B = 0.001661 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.228340 B =16856.754806 C =16988.839865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.170 4.170 3 C 0.550 3.450 4 O -0.537 6.537 5 N -0.722 5.722 6 C 0.143 3.857 7 C -0.124 4.124 8 C -0.127 4.127 9 C 0.146 3.854 10 N -0.736 5.736 11 C 0.533 3.467 12 O -0.517 6.517 13 C -0.154 4.154 14 S -0.061 6.061 15 C -0.535 4.535 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.122 4.122 24 C -0.121 4.121 25 C -0.150 4.150 26 C -0.144 4.144 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.400 0.600 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.397 0.603 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.098 0.902 46 H 0.104 0.896 47 H 0.103 0.897 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.864 -30.402 10.665 32.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.173 4.173 3 C 0.336 3.664 4 O -0.414 6.414 5 N -0.373 5.373 6 C 0.039 3.961 7 C -0.164 4.164 8 C -0.167 4.167 9 C 0.041 3.959 10 N -0.389 5.389 11 C 0.319 3.681 12 O -0.391 6.391 13 C -0.305 4.305 14 S 0.166 5.834 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.160 4.160 24 C -0.160 4.160 25 C -0.187 4.187 26 C -0.182 4.182 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.235 0.765 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.231 0.769 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.116 0.884 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.239 -30.443 9.108 31.777 hybrid contribution 1.807 1.286 1.242 2.542 sum 1.568 -29.157 10.349 30.979 Atomic orbital electron populations 1.21356 0.90354 1.02599 1.02816 1.21525 0.96000 0.89631 1.10171 1.19485 0.84190 0.84715 0.77968 1.90711 1.23340 1.83976 1.43363 1.46039 1.27414 1.09814 1.54062 1.21088 0.98743 0.81012 0.95224 1.21861 1.01097 0.95534 0.97872 1.21898 1.00684 0.94840 0.99251 1.20917 0.99012 0.81933 0.94075 1.46067 1.28656 1.09723 1.54451 1.20306 0.84545 0.85411 0.77839 1.90696 1.23151 1.83554 1.41748 1.23541 1.04648 0.96203 1.06075 1.85389 1.32405 1.02441 1.63190 1.22917 1.12042 0.95951 1.37422 0.90883 1.24995 0.95394 0.98715 0.94503 1.70030 1.21637 1.28176 1.30448 0.86115 0.79707 0.81575 0.78088 1.19624 1.20570 1.20570 1.21746 1.01248 0.95001 0.98044 1.21743 1.01477 0.95511 0.97225 1.23112 1.02021 0.98323 0.95276 1.23050 1.02709 0.98099 0.94299 0.91420 0.91394 0.91913 0.76513 0.89289 0.91211 0.91426 0.90595 0.91622 0.89361 0.76899 0.89270 0.89250 0.92249 0.90544 0.91049 0.90888 0.90865 0.88353 0.87758 0.87886 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 9.79 37.16 0.36 -0.15 16 2 C -0.17 -1.15 2.61 -155.66 -0.41 -1.55 16 3 C 0.55 5.26 7.35 -10.98 -0.08 5.18 16 4 O -0.54 -7.32 15.92 5.56 0.09 -7.23 16 5 N -0.72 -5.34 4.98 -53.80 -0.27 -5.61 16 6 C 0.14 1.20 2.45 -67.93 -0.17 1.03 16 7 C -0.12 -1.26 5.49 -26.73 -0.15 -1.41 16 8 C -0.13 -1.47 5.49 -26.73 -0.15 -1.62 16 9 C 0.15 1.64 2.45 -67.93 -0.17 1.47 16 10 N -0.74 -9.57 5.08 -53.81 -0.27 -9.84 16 11 C 0.53 9.82 7.81 -10.99 -0.09 9.74 16 12 O -0.52 -11.60 15.52 5.56 0.09 -11.52 16 13 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 14 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 15 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 16 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 17 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 19 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C -0.12 -0.94 5.39 -26.70 -0.14 -1.08 16 24 C -0.12 -0.79 5.40 -26.70 -0.14 -0.93 16 25 C -0.15 -0.83 9.88 -26.70 -0.26 -1.09 16 26 C -0.14 -0.94 9.77 -26.69 -0.26 -1.20 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.22 7.90 -51.93 -0.41 -0.19 16 29 H 0.06 0.22 6.39 -51.93 -0.33 -0.11 16 30 H 0.40 1.94 6.90 -40.82 -0.28 1.66 16 31 H 0.09 0.90 7.58 -51.93 -0.39 0.50 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 37 H 0.40 4.02 8.60 -40.82 -0.35 3.67 16 38 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 39 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.10 0.38 8.05 -51.93 -0.42 -0.04 16 47 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.11 0.89 7.67 -51.93 -0.40 0.49 16 LS Contribution 403.84 15.07 6.09 6.09 Total: -1.00 -36.39 403.84 -10.03 -46.42 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -8.02 Total: 2.12 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -1.23 Total: -7.51 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.19 Total: -40.96 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.17 Total: -18.75 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.39 -10.03 -46.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703999727.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.849 kcal (2) G-P(sol) polarization free energy of solvation -36.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds