Wall clock time and date at job start Sat Apr 11 2020 06:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 115.55026 * 2 1 4 4 C 1.50700 * 109.47298 * 280.06057 * 3 2 1 5 5 O 1.21280 * 119.99909 * 354.94062 * 4 3 2 6 6 N 1.34775 * 119.99772 * 174.93895 * 4 3 2 7 7 C 1.46506 * 119.99560 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.46972 * 179.97438 * 7 6 4 9 9 N 1.46497 * 109.47158 * 179.97438 * 8 7 6 10 10 C 1.34782 * 120.00033 * 269.99968 * 9 8 7 11 11 O 1.21284 * 119.99839 * 187.60047 * 10 9 8 12 12 C 1.50700 * 120.00035 * 7.60752 * 10 9 8 13 13 S 1.80991 * 109.46995 * 183.34919 * 12 10 9 14 14 C 1.76198 * 100.00015 * 179.97438 * 13 12 10 15 15 H 1.08005 * 120.00010 * 359.97438 * 14 13 12 16 16 C 1.38803 * 120.00297 * 180.02562 * 14 13 12 17 17 N 1.31631 * 119.99825 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00243 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46851 * 89.99907 * 18 16 14 20 20 H 1.48492 * 109.47296 * 209.99871 * 18 16 14 21 21 H 1.48500 * 109.46858 * 330.00325 * 18 16 14 22 22 C 1.46497 * 119.99816 * 90.00309 * 9 8 7 23 23 C 1.52999 * 117.49867 * 194.41991 * 22 9 8 24 24 C 1.53004 * 117.49774 * 125.76199 * 22 9 8 25 25 C 1.52998 * 117.52168 * 145.70621 * 2 1 3 26 26 C 1.52993 * 60.00214 * 107.47882 * 25 2 1 27 27 H 1.08996 * 109.47221 * 51.70444 * 1 2 3 28 28 H 1.09000 * 109.46934 * 171.70904 * 1 2 3 29 29 H 1.09005 * 109.46639 * 291.70391 * 1 2 3 30 30 H 1.09001 * 109.46901 * 160.06213 * 3 2 1 31 31 H 1.08991 * 109.46791 * 40.06370 * 3 2 1 32 32 H 0.96991 * 120.00339 * 0.02562 * 6 4 3 33 33 H 1.09004 * 109.46978 * 60.00218 * 7 6 4 34 34 H 1.08996 * 109.47324 * 299.99946 * 7 6 4 35 35 H 1.09004 * 109.47074 * 60.00297 * 8 7 6 36 36 H 1.09000 * 109.47578 * 300.00655 * 8 7 6 37 37 H 1.09001 * 109.46854 * 303.34437 * 12 10 9 38 38 H 1.08991 * 109.47415 * 63.34280 * 12 10 9 39 39 H 0.96999 * 119.99607 * 179.97438 * 17 16 14 40 40 H 1.08992 * 115.54915 * 340.09320 * 22 9 8 41 41 H 1.09005 * 117.49830 * 0.02562 * 23 22 9 42 42 H 1.08998 * 117.50226 * 145.01817 * 23 22 9 43 43 H 1.08999 * 117.49957 * 214.97462 * 24 22 9 44 44 H 1.08999 * 117.50199 * 359.97438 * 24 22 9 45 45 H 1.09000 * 117.50125 * 214.96859 * 25 2 1 46 46 H 1.09003 * 117.49710 * 359.97438 * 25 2 1 47 47 H 1.08999 * 117.50463 * 252.51154 * 26 25 2 48 48 H 1.09010 * 117.49914 * 107.49190 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.1826 1.9407 -1.3990 5 8 1.7816 1.2632 -2.3215 6 7 2.6218 3.1947 -1.6249 7 6 2.6142 3.7396 -2.9848 8 6 3.1580 5.1695 -2.9643 9 7 3.1510 5.7142 -4.3243 10 6 4.2280 5.5563 -5.1190 11 8 4.2791 6.1221 -6.1906 12 6 5.3688 4.6767 -4.6762 13 16 6.6964 4.7467 -5.9043 14 6 7.8643 3.6611 -5.1545 15 1 7.6351 3.1904 -4.2098 16 6 9.0795 3.4117 -5.7773 17 7 9.3591 3.9858 -6.9283 18 14 10.3179 2.2614 -4.9820 19 1 10.0757 0.8731 -5.4502 20 1 11.6928 2.6778 -5.3580 21 1 10.1696 2.3188 -3.5055 22 6 1.9733 6.4304 -4.8203 23 6 1.8801 6.6785 -6.3272 24 6 2.1862 7.8394 -5.3776 25 6 2.2370 -1.1210 0.7645 26 6 2.2364 -1.1207 -0.7654 27 1 -0.3633 0.6368 -0.8065 28 1 -0.3633 -1.0169 -0.1482 29 1 -0.3633 0.3801 0.9549 30 1 3.2182 1.2915 0.3504 31 1 1.6370 2.0473 0.6614 32 1 2.9428 3.7364 -0.8872 33 1 1.5939 3.7447 -3.3685 34 1 3.2409 3.1213 -3.6274 35 1 4.1782 5.1648 -2.5805 36 1 2.5310 5.7876 -2.3217 37 1 5.7447 5.0259 -3.7145 38 1 5.0184 3.6493 -4.5779 39 1 10.2085 3.8118 -7.3633 40 1 1.0446 6.2364 -4.2839 41 1 2.6949 6.3083 -6.9495 42 1 0.8900 6.6480 -6.7821 43 1 1.3972 8.5722 -5.2081 44 1 3.2024 8.2335 -5.3747 45 1 3.1722 -0.8751 1.2675 46 1 1.6120 -1.8586 1.2681 47 1 1.6112 -1.8582 -1.2687 48 1 3.1714 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001745529468.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:42 Heat of formation + Delta-G solvation = -12.367311 kcal Electronic energy + Delta-G solvation = -27130.984189 eV Core-core repulsion = 23314.405420 eV Total energy + Delta-G solvation = -3816.578769 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.35879 -39.95506 -37.85821 -36.32483 -35.70206 -33.81004 -32.45188 -30.50228 -29.16577 -28.78108 -27.71801 -25.52059 -23.37066 -22.75731 -22.59322 -22.19535 -21.10785 -19.36972 -18.96721 -17.71792 -17.12467 -16.77706 -16.46856 -16.14201 -15.83183 -15.25592 -14.94166 -14.82577 -14.62018 -14.32299 -14.07897 -13.90916 -13.80288 -13.28592 -13.11422 -12.93216 -12.71345 -12.57778 -12.54394 -12.33149 -12.10875 -11.68402 -11.65087 -11.46733 -11.21518 -11.08148 -11.04191 -10.90477 -10.78608 -10.53593 -10.29588 -10.10444 -9.84056 -9.75238 -9.25886 -9.10187 -9.08070 -8.38242 -8.26508 -6.53155 -6.24070 -3.94901 2.51837 2.55408 2.84953 3.05569 3.20925 3.24701 3.28482 3.51710 3.67242 3.98547 4.17686 4.34706 4.48804 4.56835 4.58381 4.68003 4.71431 4.79836 4.92004 4.96107 5.10030 5.12301 5.16194 5.18203 5.20652 5.23259 5.43862 5.48587 5.53243 5.57951 5.61412 5.66688 5.73866 5.80295 5.81457 5.82577 5.86253 5.96084 6.03298 6.07860 6.15299 6.21233 6.46894 6.84263 7.27411 7.42008 7.57201 8.08455 8.32636 8.46643 9.21432 10.83359 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007025 B = 0.003448 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3984.964099 B = 8119.758349 C =11656.166837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.115 4.115 3 C -0.104 4.104 4 C 0.512 3.488 5 O -0.525 6.525 6 N -0.732 5.732 7 C 0.099 3.901 8 C 0.106 3.894 9 N -0.590 5.590 10 C 0.536 3.464 11 O -0.501 6.501 12 C -0.153 4.153 13 S -0.058 6.058 14 C -0.535 4.535 15 H 0.072 0.928 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.918 3.082 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.069 3.931 23 C -0.192 4.192 24 C -0.187 4.187 25 C -0.179 4.179 26 C -0.152 4.152 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.400 0.600 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.269 0.731 40 H 0.124 0.876 41 H 0.142 0.858 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.291 -1.326 17.456 25.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.116 4.116 3 C -0.144 4.144 4 C 0.298 3.702 5 O -0.400 6.400 6 N -0.386 5.386 7 C -0.027 4.027 8 C -0.018 4.018 9 N -0.324 5.324 10 C 0.325 3.675 11 O -0.375 6.375 12 C -0.304 4.304 13 S 0.169 5.831 14 C -0.683 4.683 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.502 5.502 18 Si 0.744 3.256 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.197 1.197 22 C -0.035 4.035 23 C -0.229 4.229 24 C -0.226 4.226 25 C -0.216 4.216 26 C -0.189 4.189 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.234 0.766 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.141 0.859 41 H 0.159 0.841 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.117 0.883 45 H 0.112 0.888 46 H 0.112 0.888 47 H 0.112 0.888 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.341 -0.917 15.053 23.745 hybrid contribution 0.870 -1.163 2.168 2.610 sum -17.471 -2.080 17.221 24.620 Atomic orbital electron populations 1.21271 0.91850 1.02169 1.01511 1.21030 0.94852 0.89459 1.06249 1.21207 1.02752 0.96130 0.94348 1.20646 0.77122 0.81051 0.91415 1.90738 1.45572 1.58350 1.45336 1.45889 1.66934 1.15629 1.10135 1.21850 1.02412 0.94562 0.83830 1.21629 1.03201 0.93057 0.83924 1.47197 1.14975 1.56398 1.13829 1.20408 0.82273 0.80901 0.83921 1.90538 1.78087 1.46615 1.22296 1.23645 0.99431 1.01100 1.06203 1.85377 1.09396 1.61985 1.26377 1.22836 1.03435 1.32105 1.09940 0.91008 1.24984 0.97471 0.96176 0.94872 1.70013 1.23705 1.41308 1.15200 0.86182 0.79695 0.80365 0.79354 1.20215 1.20715 1.19710 1.21618 0.88804 0.95939 0.97178 1.23894 1.04276 1.01823 0.92936 1.23255 1.03162 0.91308 1.04843 1.23161 1.02110 1.00989 0.95349 1.22907 1.02440 1.00353 0.93191 0.91897 0.92445 0.92555 0.88585 0.88597 0.76626 0.91098 0.90649 0.89190 0.89665 0.89439 0.89111 0.92153 0.85865 0.84089 0.89494 0.89003 0.88341 0.88848 0.88798 0.88829 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.72 37.16 0.36 -0.54 16 2 C -0.12 -1.00 1.62 -154.51 -0.25 -1.25 16 3 C -0.10 -0.78 5.63 -27.88 -0.16 -0.94 16 4 C 0.51 5.44 7.74 -10.99 -0.09 5.35 16 5 O -0.52 -7.86 15.20 5.56 0.08 -7.77 16 6 N -0.73 -6.29 5.56 -60.29 -0.33 -6.63 16 7 C 0.10 1.05 5.99 -4.04 -0.02 1.03 16 8 C 0.11 1.03 5.31 -4.04 -0.02 1.01 16 9 N -0.59 -7.94 2.83 -166.11 -0.47 -8.41 16 10 C 0.54 9.75 7.49 -10.98 -0.08 9.67 16 11 O -0.50 -10.68 11.68 5.55 0.06 -10.62 16 12 C -0.15 -3.04 4.96 36.01 0.18 -2.86 16 13 S -0.06 -1.55 20.58 -107.50 -2.21 -3.76 16 14 C -0.53 -15.10 9.50 30.94 0.29 -14.81 16 15 H 0.07 1.92 7.80 -52.48 -0.41 1.52 16 16 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 17 N -0.87 -26.02 13.22 55.49 0.73 -25.28 16 18 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 C 0.07 0.83 6.60 -67.93 -0.45 0.38 16 23 C -0.19 -2.63 9.62 -26.69 -0.26 -2.89 16 24 C -0.19 -2.34 9.90 -26.69 -0.26 -2.60 16 25 C -0.18 -1.37 9.90 -26.74 -0.26 -1.64 16 26 C -0.15 -1.51 8.90 -26.73 -0.24 -1.75 16 27 H 0.06 0.60 8.06 -51.93 -0.42 0.18 16 28 H 0.06 0.45 8.07 -51.93 -0.42 0.03 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.10 0.61 7.95 -51.93 -0.41 0.19 16 31 H 0.10 0.49 8.13 -51.93 -0.42 0.07 16 32 H 0.40 2.10 8.47 -40.82 -0.35 1.76 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.04 6.93 -51.93 -0.36 0.68 16 35 H 0.09 0.86 6.42 -51.93 -0.33 0.53 16 36 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 37 H 0.09 1.57 7.01 -51.92 -0.36 1.21 16 38 H 0.09 1.74 6.96 -51.92 -0.36 1.38 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.14 2.48 5.15 -52.35 -0.27 2.21 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.10 1.48 7.70 -51.93 -0.40 1.08 16 45 H 0.09 0.64 8.09 -51.93 -0.42 0.22 16 46 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.09 1.06 8.14 -51.92 -0.42 0.63 16 LS Contribution 406.56 15.07 6.13 6.13 Total: -1.00 -35.47 406.56 -10.26 -45.72 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.87 Total: 4.12 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -1.35 Total: -9.82 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: -0.07 Total: -40.32 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.15 Total: -18.39 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.47 -10.26 -45.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745529468.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.357 kcal (2) G-P(sol) polarization free energy of solvation -35.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds