Wall clock time and date at job start Sat Apr 11 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00010 * 2 1 4 4 C 1.50706 * 109.47065 * 275.51041 * 3 2 1 5 5 H 1.07998 * 119.99739 * 4.68394 * 4 3 2 6 6 C 1.37872 * 120.00217 * 184.68988 * 4 3 2 7 7 N 1.31520 * 119.99754 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00335 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47516 * 59.99262 * 8 6 4 10 10 H 1.48500 * 109.47177 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47004 * 299.99429 * 8 6 4 12 12 S 1.65602 * 120.00086 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40057 * 159.36167 * 12 2 1 14 14 O 1.42101 * 106.40234 * 26.44836 * 12 2 1 15 15 N 1.65593 * 107.21937 * 272.90287 * 12 2 1 16 16 C 1.46505 * 119.99874 * 62.61614 * 15 12 2 17 17 C 1.53001 * 109.47421 * 164.34877 * 16 15 12 18 18 C 1.52998 * 109.47036 * 179.97438 * 17 16 15 19 19 C 1.52997 * 109.47212 * 60.00235 * 18 17 16 20 20 C 1.52994 * 109.47329 * 299.99662 * 18 17 16 21 21 C 1.50703 * 109.46610 * 180.02562 * 18 17 16 22 22 C 1.38241 * 119.99792 * 180.02562 * 21 18 17 23 23 C 1.38228 * 119.99902 * 179.97438 * 22 21 18 24 24 C 1.38234 * 120.00213 * 359.96008 * 23 22 21 25 25 C 1.38239 * 119.99975 * 0.27211 * 24 23 22 26 26 C 1.38228 * 119.99565 * 359.51462 * 25 24 23 27 27 H 1.08998 * 109.47049 * 269.99951 * 1 2 3 28 28 H 1.08998 * 109.47449 * 29.99922 * 1 2 3 29 29 H 1.09007 * 109.47069 * 150.00405 * 1 2 3 30 30 H 1.08997 * 109.47124 * 35.50541 * 3 2 1 31 31 H 1.08998 * 109.47266 * 155.50891 * 3 2 1 32 32 H 0.96998 * 119.99549 * 180.02562 * 7 6 4 33 33 H 0.96993 * 120.00539 * 242.61731 * 15 12 2 34 34 H 1.08998 * 109.46965 * 44.34419 * 16 15 12 35 35 H 1.08998 * 109.46816 * 284.34663 * 16 15 12 36 36 H 1.09000 * 109.46780 * 59.99456 * 17 16 15 37 37 H 1.09002 * 109.46835 * 300.00211 * 17 16 15 38 38 H 1.08996 * 109.47261 * 179.97438 * 19 18 17 39 39 H 1.09002 * 109.47056 * 299.99940 * 19 18 17 40 40 H 1.09002 * 109.47097 * 59.99346 * 19 18 17 41 41 H 1.08995 * 109.47457 * 300.00424 * 20 18 17 42 42 H 1.09001 * 109.47107 * 60.00019 * 20 18 17 43 43 H 1.08996 * 109.47140 * 180.02562 * 20 18 17 44 44 H 1.07995 * 119.99813 * 359.97438 * 22 21 18 45 45 H 1.08000 * 119.99887 * 179.97438 * 23 22 21 46 46 H 1.07998 * 120.00384 * 179.97438 * 24 23 22 47 47 H 1.08004 * 119.99885 * 179.72757 * 25 24 23 48 48 H 1.08012 * 120.00007 * 180.25182 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3305 1.7720 -1.4143 5 1 1.8470 1.2441 -2.2230 6 6 3.0694 2.9062 -1.6758 7 7 3.6578 3.5492 -0.6910 8 14 3.2349 3.5296 -3.4289 9 1 1.8890 3.8453 -3.9712 10 1 4.0731 4.7553 -3.4414 11 1 3.8738 2.4840 -4.2679 12 16 2.2930 -1.4341 0.0006 13 8 3.5984 -1.1440 -0.4800 14 8 1.4367 -2.3922 -0.6061 15 7 2.4687 -1.8980 1.5805 16 6 1.2858 -2.1874 2.3949 17 6 1.7063 -2.9517 3.6518 18 6 0.4709 -3.2533 4.5025 19 6 -0.5105 -4.1034 3.6932 20 6 -0.2035 -1.9406 4.9058 21 6 0.8854 -4.0056 5.7409 22 6 -0.0663 -4.3902 6.6669 23 6 0.3137 -5.0806 7.8025 24 6 1.6452 -5.3874 8.0117 25 6 2.5975 -4.9986 7.0881 26 6 2.2169 -4.3120 5.9504 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6546 2.0017 0.5968 31 1 3.1890 1.1158 0.4260 32 1 4.1774 4.3474 -0.8749 33 1 3.3548 -1.9781 1.9668 34 1 0.5869 -2.7931 1.8181 35 1 0.8049 -1.2523 2.6822 36 1 2.4052 -2.3459 4.2286 37 1 2.1873 -3.8867 3.3645 38 1 -1.3904 -4.3187 4.2994 39 1 -0.8101 -3.5589 2.7978 40 1 -0.0299 -5.0387 3.4060 41 1 0.4956 -1.3350 5.4823 42 1 -0.5031 -1.3960 4.0104 43 1 -1.0833 -2.1555 5.5122 44 1 -1.1067 -4.1511 6.5030 45 1 -0.4297 -5.3807 8.5261 46 1 1.9422 -5.9265 8.8992 47 1 3.6384 -5.2344 7.2538 48 1 2.9604 -4.0118 5.2267 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604376566.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:06 Heat of formation + Delta-G solvation = -86.602790 kcal Electronic energy + Delta-G solvation = -27961.160277 eV Core-core repulsion = 24141.362416 eV Total energy + Delta-G solvation = -3819.797861 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.84791 -38.37176 -38.04312 -37.19419 -36.83124 -35.50780 -34.49283 -31.89974 -30.93774 -29.64878 -29.10974 -28.11825 -26.77149 -25.24209 -24.19622 -23.36664 -22.65629 -20.53589 -19.76134 -18.91827 -18.43198 -18.11677 -18.01313 -17.24812 -16.64835 -16.07983 -16.04867 -15.89247 -15.70434 -15.13474 -14.93115 -14.68143 -14.54089 -14.49520 -14.18911 -14.05263 -13.89697 -13.51682 -13.34531 -13.31438 -13.13039 -13.02260 -12.91830 -12.85717 -12.76819 -12.47772 -12.40332 -12.36625 -12.26802 -12.14419 -11.95419 -11.76540 -11.75919 -11.34152 -11.30831 -10.59526 -10.38932 -9.76599 -9.74489 -9.52303 -8.19981 -6.31912 -0.29043 0.53263 0.57132 1.39275 1.42939 1.49920 2.07018 2.40777 2.67104 2.95311 3.11146 3.45620 3.62195 3.78061 3.99181 4.08241 4.17401 4.22001 4.24055 4.36003 4.38736 4.41263 4.51700 4.62978 4.71562 4.74330 4.79797 4.84495 4.87217 5.02387 5.04789 5.07100 5.10128 5.11451 5.20691 5.23778 5.23916 5.29102 5.39687 5.46441 5.49911 5.68480 5.70188 5.71179 5.80457 5.89180 6.10218 6.18599 6.20068 6.76578 7.36974 8.87453 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023077 B = 0.002418 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.041375 B =11575.529394 C =11662.147974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.002 6.002 3 C 0.272 3.728 4 C -0.551 4.551 5 H 0.053 0.947 6 C 0.011 3.989 7 N -0.924 5.924 8 Si 0.956 3.044 9 H -0.262 1.262 10 H -0.277 1.277 11 H -0.278 1.278 12 S 2.798 3.202 13 O -1.014 7.014 14 O -1.010 7.010 15 N -1.120 6.120 16 C 0.108 3.892 17 C -0.114 4.114 18 C -0.018 4.018 19 C -0.146 4.146 20 C -0.145 4.145 21 C -0.074 4.074 22 C -0.124 4.124 23 C -0.127 4.127 24 C -0.137 4.137 25 C -0.130 4.130 26 C -0.139 4.139 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.028 0.972 31 H 0.018 0.982 32 H 0.267 0.733 33 H 0.421 0.579 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.133 0.867 45 H 0.138 0.862 46 H 0.135 0.865 47 H 0.132 0.868 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.235 -16.353 18.646 26.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.844 5.844 3 C 0.148 3.852 4 C -0.591 4.591 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.564 5.564 8 Si 0.780 3.220 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.204 1.204 12 S 2.806 3.194 13 O -0.998 6.998 14 O -0.993 6.993 15 N -0.884 5.884 16 C -0.017 4.017 17 C -0.153 4.153 18 C -0.019 4.019 19 C -0.203 4.203 20 C -0.202 4.202 21 C -0.074 4.074 22 C -0.142 4.142 23 C -0.145 4.145 24 C -0.155 4.155 25 C -0.148 4.148 26 C -0.156 4.156 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.256 0.744 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.151 0.849 45 H 0.156 0.844 46 H 0.153 0.847 47 H 0.150 0.850 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.032 -16.643 17.832 26.011 hybrid contribution 0.795 0.726 -0.452 1.168 sum -8.237 -15.917 17.380 24.965 Atomic orbital electron populations 1.21631 0.78098 1.03634 1.02617 1.57449 1.15722 1.21838 1.89383 1.18611 0.90539 0.80233 0.95825 1.21833 1.31912 1.10578 0.94746 0.92873 1.25762 0.94778 0.96852 1.01468 1.70004 1.33808 1.19351 1.33211 0.85646 0.78767 0.77645 0.79891 1.18687 1.20163 1.20359 1.01169 0.71990 0.72521 0.73684 1.93571 1.41319 1.85229 1.79673 1.93498 1.68983 1.61071 1.75793 1.55786 1.15568 1.85202 1.31809 1.21674 0.86401 1.00693 0.92940 1.21912 0.98170 1.00744 0.94438 1.19419 0.95102 0.95443 0.91900 1.22010 0.98739 0.99449 1.00072 1.21999 1.00659 0.95419 1.02091 1.19914 0.93578 0.98078 0.95870 1.21191 0.99872 0.98859 0.94242 1.21422 0.96690 0.98566 0.97827 1.21429 0.93448 1.00623 0.99974 1.21415 1.00384 0.98492 0.94497 1.21422 0.96226 0.99594 0.98397 0.90619 0.91136 0.90666 0.95354 0.96365 0.92380 0.74393 0.90224 0.90570 0.90298 0.90541 0.91210 0.91505 0.92854 0.92823 0.91334 0.91330 0.84930 0.84434 0.84670 0.85027 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.73 10.69 127.77 1.37 4.10 16 2 N -1.00 -40.77 3.23 -543.23 -1.75 -42.52 16 3 C 0.27 13.76 5.10 85.63 0.44 14.20 16 4 C -0.55 -31.37 9.38 25.60 0.24 -31.13 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.63 5.46 84.65 0.46 1.09 16 7 N -0.92 -54.63 13.29 21.45 0.28 -54.34 16 8 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 9 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 12 S 2.80 109.85 6.08 -56.49 -0.34 109.50 16 13 O -1.01 -49.76 17.00 -128.00 -2.18 -51.94 16 14 O -1.01 -41.19 16.34 -128.00 -2.09 -43.28 16 15 N -1.12 -31.31 6.05 -187.48 -1.13 -32.44 16 16 C 0.11 2.35 5.55 86.38 0.48 2.83 16 17 C -0.11 -1.98 3.07 30.59 0.09 -1.89 16 18 C -0.02 -0.27 0.63 -52.93 -0.03 -0.31 16 19 C -0.15 -2.14 7.94 71.98 0.57 -1.57 16 20 C -0.14 -2.10 7.93 71.98 0.57 -1.53 16 21 C -0.07 -1.22 4.76 -19.86 -0.09 -1.31 16 22 C -0.12 -1.83 8.71 22.27 0.19 -1.63 16 23 C -0.13 -1.75 10.05 22.27 0.22 -1.52 16 24 C -0.14 -1.93 10.05 22.27 0.22 -1.70 16 25 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 26 C -0.14 -2.35 8.98 22.27 0.20 -2.15 16 27 H 0.08 1.83 8.07 -2.39 -0.02 1.81 16 28 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 29 H 0.07 2.25 7.05 -2.38 -0.02 2.24 16 30 H 0.03 1.44 8.11 -2.39 -0.02 1.42 16 31 H 0.02 1.01 7.51 -2.39 -0.02 0.99 16 32 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 33 H 0.42 10.35 8.66 -96.75 -0.84 9.51 16 34 H 0.08 1.73 6.08 -2.39 -0.01 1.71 16 35 H 0.08 1.53 6.36 -2.39 -0.02 1.52 16 36 H 0.08 1.32 7.51 -2.39 -0.02 1.30 16 37 H 0.08 1.31 7.51 -2.39 -0.02 1.29 16 38 H 0.07 0.85 7.39 -2.39 -0.02 0.84 16 39 H 0.07 0.98 6.43 -2.39 -0.02 0.97 16 40 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.07 0.97 6.43 -2.39 -0.02 0.95 16 43 H 0.07 0.84 7.39 -2.39 -0.02 0.82 16 44 H 0.13 1.54 7.10 -2.91 -0.02 1.52 16 45 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 46 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 47 H 0.13 1.60 8.06 -2.91 -0.02 1.57 16 48 H 0.13 2.01 5.90 -2.90 -0.02 1.99 16 Total: -1.00 -73.51 393.33 0.09 -73.42 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.12 Total: 19.00 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 5.16 Total: -24.30 kcal Atomic # 7 Polarization: -126.71 SS G_CDS: -2.60 Total: -129.31 kcal Atomic # 8 Polarization: -90.95 SS G_CDS: -4.27 Total: -95.21 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 109.85 SS G_CDS: -0.34 Total: 109.50 kcal Total: -73.51 0.09 -73.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604376566.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.187 kcal (2) G-P(sol) polarization free energy of solvation -73.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds