Wall clock time and date at job start Sat Apr 11 2020 06:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46896 * 109.47066 * 2 1 4 4 C 1.46905 * 111.00155 * 299.99633 * 3 2 1 5 5 C 1.50698 * 109.47044 * 180.02562 * 4 3 2 6 6 C 1.38297 * 119.93202 * 90.00061 * 5 4 3 7 7 C 1.38101 * 120.07230 * 180.02562 * 6 5 4 8 8 C 1.38886 * 119.92536 * 359.97438 * 7 6 5 9 9 O 1.35750 * 120.06440 * 180.02562 * 8 7 6 10 10 C 1.34828 * 117.00075 * 5.53777 * 9 8 7 11 11 H 1.07993 * 120.00518 * 354.94289 * 10 9 8 12 12 C 1.38663 * 119.99751 * 174.94575 * 10 9 8 13 13 N 1.31556 * 120.00220 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99821 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47448 * 89.99502 * 14 12 10 16 16 H 1.48501 * 109.47175 * 209.99712 * 14 12 10 17 17 H 1.48506 * 109.47415 * 329.99678 * 14 12 10 18 18 C 1.38874 * 119.86623 * 0.27854 * 8 7 6 19 19 C 1.38110 * 119.92772 * 359.48927 * 18 8 7 20 20 C 1.50705 * 109.47132 * 239.99958 * 2 1 3 21 21 N 1.34768 * 119.99898 * 155.00272 * 20 2 1 22 22 O 1.21283 * 120.00124 * 335.00064 * 20 2 1 23 23 C 1.50700 * 109.46780 * 119.99932 * 2 1 3 24 24 C 1.38237 * 120.00112 * 239.72308 * 23 2 1 25 25 C 1.38230 * 120.00041 * 179.78564 * 24 23 2 26 26 C 1.38231 * 120.00080 * 0.45021 * 25 24 23 27 27 C 1.38234 * 120.00199 * 359.80614 * 26 25 24 28 28 C 1.38234 * 120.00148 * 60.00195 * 23 2 1 29 29 H 1.09003 * 109.46721 * 60.00574 * 1 2 3 30 30 H 1.09001 * 109.46871 * 179.97438 * 1 2 3 31 31 H 1.08989 * 109.47422 * 300.00218 * 1 2 3 32 32 H 1.00902 * 110.99547 * 176.04220 * 3 2 1 33 33 H 1.09003 * 109.46647 * 59.99968 * 4 3 2 34 34 H 1.09004 * 109.46926 * 300.00194 * 4 3 2 35 35 H 1.07999 * 119.96698 * 0.02562 * 6 5 4 36 36 H 1.07992 * 120.03608 * 179.97438 * 7 6 5 37 37 H 0.96996 * 120.00178 * 179.97438 * 13 12 10 38 38 H 1.07996 * 120.03745 * 179.72497 * 18 8 7 39 39 H 1.07996 * 119.96227 * 180.23396 * 19 18 8 40 40 H 0.97004 * 120.00373 * 0.02562 * 21 20 2 41 41 H 0.97000 * 119.99966 * 179.97438 * 21 20 2 42 42 H 1.08002 * 119.99350 * 0.02562 * 24 23 2 43 43 H 1.08004 * 119.99874 * 180.27556 * 25 24 23 44 44 H 1.08007 * 120.00241 * 179.82668 * 26 25 24 45 45 H 1.07999 * 120.00599 * 179.97438 * 27 26 25 46 46 H 1.08003 * 120.00240 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5487 2.1099 -1.1878 5 6 2.0704 3.5233 -1.1532 6 6 3.2876 3.8241 -1.7367 7 6 3.7686 5.1182 -1.7063 8 6 3.0283 6.1183 -1.0892 9 8 3.4982 7.3915 -1.0581 10 6 4.6325 7.6422 -1.7424 11 1 5.1688 6.8322 -2.2143 12 6 5.1107 8.9401 -1.8402 13 7 4.4573 9.9269 -1.2658 14 14 6.6819 9.2875 -2.7889 15 1 6.3510 9.5667 -4.2094 16 1 7.3659 10.4663 -2.1990 17 1 7.5780 8.1058 -2.7124 18 6 1.8088 5.8120 -0.4996 19 6 1.3310 4.5168 -0.5376 20 6 2.0324 -0.7104 -1.2305 21 7 3.2543 -0.4247 -1.7219 22 8 1.3371 -1.5394 -1.7785 23 6 2.0323 -0.7104 1.2305 24 6 2.8317 -0.0403 2.1376 25 6 3.2888 -0.6906 3.2685 26 6 2.9541 -2.0138 3.4877 27 6 2.1590 -2.6855 2.5780 28 6 1.6983 -2.0338 1.4493 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.0262 1.4125 0.0650 33 1 0.4588 2.1245 -1.1960 34 1 1.9123 1.6106 -2.0860 35 1 3.8626 3.0461 -2.2168 36 1 4.7194 5.3524 -2.1618 37 1 4.7920 10.8347 -1.3338 38 1 1.2329 6.5866 -0.0151 39 1 0.3809 4.2788 -0.0825 40 1 3.8107 0.2380 -1.2834 41 1 3.5778 -0.8822 -2.5137 42 1 3.0960 0.9925 1.9645 43 1 3.9097 -0.1657 3.9794 44 1 3.3135 -2.5228 4.3699 45 1 1.8979 -3.7194 2.7490 46 1 1.0771 -2.5587 0.7385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731212408.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:13 Heat of formation + Delta-G solvation = -5.186086 kcal Electronic energy + Delta-G solvation = -28683.107950 eV Core-core repulsion = 24731.396631 eV Total energy + Delta-G solvation = -3951.711319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.98949 -39.10642 -38.84997 -37.17784 -35.93724 -33.79441 -32.65827 -32.05116 -31.12075 -30.23707 -29.64949 -28.58372 -25.85941 -25.06011 -23.76417 -22.53364 -22.29110 -22.01443 -20.50691 -19.63699 -18.12694 -17.96280 -17.63770 -17.06823 -16.92720 -15.84665 -15.30928 -14.99632 -14.82409 -14.60527 -14.49690 -14.40514 -14.25274 -13.84511 -13.67107 -13.62556 -13.44166 -12.88134 -12.75793 -12.74120 -12.42991 -12.21123 -12.09314 -11.98289 -11.65435 -11.40476 -11.21260 -11.17010 -10.81373 -10.72614 -10.65322 -10.48177 -10.43531 -9.94357 -9.39627 -9.11260 -9.02056 -8.88601 -8.58439 -8.23592 -7.25450 -6.50161 -4.09157 1.07805 1.21591 2.15827 2.18736 2.36488 3.08457 3.09740 3.14405 3.17033 3.59419 3.87309 3.91990 4.39050 4.56485 4.58438 4.71229 4.81433 4.92061 4.96318 5.04537 5.20765 5.23559 5.29844 5.31310 5.42004 5.55565 5.57306 5.63763 5.76324 5.78589 5.83533 5.87484 6.04131 6.15610 6.23600 6.31649 6.34709 6.36749 6.45007 6.63750 6.70543 6.79097 6.84317 6.95646 7.00038 7.12789 7.21313 7.32333 7.38671 7.76548 7.94527 7.94977 8.95326 9.65095 10.67691 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016907 B = 0.002326 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.696197 B =12034.285218 C =12364.512234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.141 3.859 3 N -0.662 5.662 4 C 0.107 3.893 5 C -0.187 4.187 6 C -0.065 4.065 7 C -0.235 4.235 8 C 0.157 3.843 9 O -0.176 6.176 10 C -0.393 4.393 11 H 0.092 0.908 12 C 0.040 3.960 13 N -0.861 5.861 14 Si 0.941 3.059 15 H -0.273 1.273 16 H -0.277 1.277 17 H -0.268 1.268 18 C -0.194 4.194 19 C -0.049 4.049 20 C 0.501 3.499 21 N -0.853 5.853 22 O -0.540 6.540 23 C -0.077 4.077 24 C -0.096 4.096 25 C -0.121 4.121 26 C -0.119 4.119 27 C -0.122 4.122 28 C -0.108 4.108 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.342 0.658 33 H 0.080 0.920 34 H 0.034 0.966 35 H 0.101 0.899 36 H 0.126 0.874 37 H 0.271 0.729 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.400 0.600 41 H 0.402 0.598 42 H 0.138 0.862 43 H 0.124 0.876 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.263 -21.763 5.028 22.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.047 3.953 3 N -0.296 5.296 4 C -0.020 4.020 5 C -0.188 4.188 6 C -0.084 4.084 7 C -0.254 4.254 8 C 0.103 3.897 9 O -0.079 6.079 10 C -0.469 4.469 11 H 0.109 0.891 12 C -0.165 4.165 13 N -0.496 5.496 14 Si 0.766 3.234 15 H -0.199 1.199 16 H -0.202 1.202 17 H -0.192 1.192 18 C -0.213 4.213 19 C -0.068 4.068 20 C 0.283 3.717 21 N -0.418 5.418 22 O -0.415 6.415 23 C -0.078 4.078 24 C -0.114 4.114 25 C -0.139 4.139 26 C -0.137 4.137 27 C -0.141 4.141 28 C -0.127 4.127 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.163 0.837 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.119 0.881 36 H 0.144 0.856 37 H 0.080 0.920 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.229 0.771 41 H 0.233 0.767 42 H 0.156 0.844 43 H 0.142 0.858 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.413 -21.557 5.334 22.468 hybrid contribution 1.941 -0.038 -1.319 2.347 sum -1.472 -21.595 4.015 22.015 Atomic orbital electron populations 1.21748 0.90196 1.03068 1.03242 1.20068 0.97878 0.87840 0.89559 1.60823 1.16307 1.09875 1.42601 1.20845 1.00466 0.91282 0.89419 1.18997 0.97753 0.93709 1.08364 1.20549 0.94653 0.95530 0.97678 1.21103 1.02710 0.93067 1.08511 1.19418 0.92015 0.85748 0.92514 1.83982 1.39618 1.21836 1.62489 1.21318 0.99481 0.94263 1.31816 0.89071 1.25298 0.99490 0.94318 0.97392 1.70033 1.38545 1.00168 1.40806 0.85714 0.79936 0.78604 0.79188 1.19864 1.20220 1.19210 1.20234 0.96195 0.96950 1.07928 1.20470 0.98273 0.91570 0.96462 1.21638 0.81329 0.82441 0.86276 1.43944 1.18655 1.45731 1.33425 1.90717 1.56213 1.33815 1.60736 1.19390 0.99025 0.93904 0.95499 1.21165 0.96148 1.00574 0.93545 1.21204 1.00245 0.94814 0.97676 1.21204 0.98286 0.94979 0.99227 1.21088 0.98484 0.99920 0.94560 1.21063 0.99758 0.94045 0.97792 0.91630 0.91105 0.90564 0.83738 0.90132 0.94749 0.88083 0.85644 0.91950 0.86530 0.86950 0.77134 0.76713 0.84414 0.85809 0.86188 0.86091 0.85788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 7.58 37.16 0.28 -1.05 16 2 C 0.14 1.48 0.74 -133.90 -0.10 1.38 16 3 N -0.66 -7.01 4.94 -103.57 -0.51 -7.52 16 4 C 0.11 1.30 5.06 -4.97 -0.03 1.28 16 5 C -0.19 -2.86 5.40 -104.58 -0.56 -3.42 16 6 C -0.07 -1.07 9.69 -39.61 -0.38 -1.45 16 7 C -0.23 -4.76 9.17 -39.39 -0.36 -5.12 16 8 C 0.16 3.64 6.65 -39.11 -0.26 3.38 16 9 O -0.18 -4.89 9.76 0.05 0.00 -4.89 16 10 C -0.39 -10.66 9.49 30.89 0.29 -10.37 16 11 H 0.09 2.28 5.20 -52.49 -0.27 2.00 16 12 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 13 N -0.86 -24.80 13.67 55.48 0.76 -24.04 16 14 Si 0.94 20.01 29.55 -169.99 -5.02 14.99 16 15 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 16 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 17 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 18 C -0.19 -3.91 9.99 -39.39 -0.39 -4.31 16 19 C -0.05 -0.82 9.69 -39.60 -0.38 -1.20 16 20 C 0.50 5.72 5.37 -10.99 -0.06 5.66 16 21 N -0.85 -7.34 8.02 31.22 0.25 -7.09 16 22 O -0.54 -7.91 16.93 5.55 0.09 -7.82 16 23 C -0.08 -0.79 4.76 -104.62 -0.50 -1.29 16 24 C -0.10 -0.94 9.14 -39.58 -0.36 -1.30 16 25 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 26 C -0.12 -0.99 10.05 -39.59 -0.40 -1.39 16 27 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 28 C -0.11 -1.09 8.82 -39.58 -0.35 -1.44 16 29 H 0.06 0.71 6.40 -51.93 -0.33 0.38 16 30 H 0.07 0.75 7.12 -51.93 -0.37 0.38 16 31 H 0.08 0.78 8.14 -51.94 -0.42 0.36 16 32 H 0.34 3.33 6.13 -39.29 -0.24 3.09 16 33 H 0.08 0.98 6.25 -51.93 -0.32 0.66 16 34 H 0.03 0.41 6.51 -51.93 -0.34 0.07 16 35 H 0.10 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.13 2.57 5.64 -52.49 -0.30 2.27 16 37 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 39 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.40 2.83 7.31 -40.82 -0.30 2.53 16 41 H 0.40 3.01 8.93 -40.82 -0.36 2.65 16 42 H 0.14 1.32 6.40 -52.49 -0.34 0.98 16 43 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 44 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 45 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.12 1.28 7.58 -52.48 -0.40 0.88 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -31.88 379.64 -8.83 -40.71 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -5.67 Total: 12.56 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -4.45 Total: -22.61 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.50 Total: -38.65 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.88 -8.83 -40.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731212408.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.519 kcal (2) G-P(sol) polarization free energy of solvation -31.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds