Wall clock time and date at job start Sat Apr 11 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47349 * 2 1 4 4 C 1.46904 * 111.00311 * 59.99626 * 3 2 1 5 5 C 1.50693 * 109.47362 * 180.02562 * 4 3 2 6 6 C 1.38299 * 119.92616 * 269.72889 * 5 4 3 7 7 C 1.38106 * 120.06877 * 179.72630 * 6 5 4 8 8 C 1.38885 * 119.92780 * 0.56473 * 7 6 5 9 9 O 1.35753 * 120.06794 * 179.68196 * 8 7 6 10 10 C 1.34828 * 116.99625 * 174.48805 * 9 8 7 11 11 H 1.08004 * 119.99995 * 5.05694 * 10 9 8 12 12 C 1.38649 * 119.99969 * 185.05845 * 10 9 8 13 13 N 1.31560 * 119.99855 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00354 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46994 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47226 * 119.99727 * 14 12 10 17 17 H 1.48499 * 109.47057 * 240.00111 * 14 12 10 18 18 C 1.38882 * 119.86023 * 359.70791 * 8 7 6 19 19 C 1.38098 * 119.93391 * 359.97438 * 18 8 7 20 20 C 1.50704 * 109.46896 * 119.99747 * 2 1 3 21 21 N 1.34778 * 119.99607 * 205.27617 * 20 2 1 22 22 O 1.21276 * 120.00422 * 24.99816 * 20 2 1 23 23 C 1.50700 * 109.47321 * 239.99535 * 2 1 3 24 24 C 1.38230 * 120.00036 * 119.72605 * 23 2 1 25 25 C 1.38234 * 120.00079 * 179.76624 * 24 23 2 26 26 C 1.38227 * 119.99910 * 0.51123 * 25 24 23 27 27 C 1.38237 * 120.00275 * 359.74101 * 26 25 24 28 28 C 1.38234 * 119.99806 * 300.00369 * 23 2 1 29 29 H 1.09001 * 109.47355 * 300.00494 * 1 2 3 30 30 H 1.08996 * 109.47073 * 60.00535 * 1 2 3 31 31 H 1.08999 * 109.47194 * 180.02562 * 1 2 3 32 32 H 1.00894 * 111.00111 * 183.95657 * 3 2 1 33 33 H 1.09002 * 109.46741 * 300.00398 * 4 3 2 34 34 H 1.08997 * 109.46881 * 59.99978 * 4 3 2 35 35 H 1.07994 * 119.97111 * 359.97438 * 6 5 4 36 36 H 1.07998 * 120.03814 * 180.27275 * 7 6 5 37 37 H 0.97002 * 119.99942 * 179.97438 * 13 12 10 38 38 H 1.07998 * 120.03214 * 179.97438 * 18 8 7 39 39 H 1.07999 * 119.96876 * 180.02562 * 19 18 8 40 40 H 0.97008 * 119.99914 * 179.72799 * 21 20 2 41 41 H 0.96995 * 120.00518 * 359.72065 * 21 20 2 42 42 H 1.08007 * 119.99948 * 0.02562 * 24 23 2 43 43 H 1.08006 * 119.99795 * 180.22949 * 25 24 23 44 44 H 1.08006 * 120.00199 * 179.72222 * 26 25 24 45 45 H 1.07999 * 120.00173 * 179.97438 * 27 26 25 46 46 H 1.07994 * 120.00282 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5487 2.1100 1.1877 5 6 2.0693 3.5237 1.1525 6 6 3.2839 3.8264 1.7405 7 6 3.7665 5.1199 1.7051 8 6 3.0252 6.1195 1.0884 9 8 3.4938 7.3931 1.0576 10 6 2.7820 8.2902 0.3460 11 1 1.8408 8.0022 -0.0988 12 6 3.2581 9.5824 0.1850 13 7 4.4043 9.9333 0.7272 14 14 2.2716 10.8255 -0.8003 15 1 1.0277 10.1862 -1.2997 16 1 1.9210 11.9787 0.0671 17 1 3.0815 11.2998 -1.9511 18 6 1.8032 5.8132 0.5038 19 6 1.3291 4.5166 0.5368 20 6 2.0323 -0.7104 1.2305 21 7 3.2520 -0.4205 1.7252 22 8 1.3370 -1.5392 1.7786 23 6 2.0324 -0.7105 -1.2304 24 6 2.8224 -0.0371 -2.1432 25 6 3.2872 -0.6902 -3.2693 26 6 2.9533 -2.0136 -3.4880 27 6 2.1589 -2.6856 -2.5779 28 6 1.6984 -2.0339 -1.4490 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.0262 1.4126 -0.0650 33 1 0.4588 2.1246 1.1958 34 1 1.9120 1.6108 2.0859 35 1 3.8575 3.0499 2.2244 36 1 4.7171 5.3549 2.1606 37 1 4.7376 10.8372 0.6143 38 1 1.2242 6.5884 0.0238 39 1 0.3791 4.2778 0.0820 40 1 3.5738 -0.8749 2.5196 41 1 3.8082 0.2424 1.2870 42 1 3.0800 0.9981 -1.9744 43 1 3.9076 -0.1651 -3.9806 44 1 3.3127 -2.5226 -4.3702 45 1 1.8976 -3.7194 -2.7490 46 1 1.0778 -2.5588 -0.7380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731212409.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:16 Heat of formation + Delta-G solvation = -5.173305 kcal Electronic energy + Delta-G solvation = -28680.402230 eV Core-core repulsion = 24728.691465 eV Total energy + Delta-G solvation = -3951.710765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.98893 -39.10424 -38.84936 -37.17849 -35.93740 -33.79647 -32.65199 -32.04668 -31.11582 -30.23440 -29.65848 -28.56818 -25.89115 -25.02727 -23.75983 -22.52129 -22.28784 -22.02815 -20.51815 -19.63806 -18.10913 -17.95787 -17.62072 -17.07127 -16.93711 -15.86523 -15.35666 -14.96373 -14.78334 -14.59622 -14.47985 -14.38320 -14.27703 -13.93457 -13.63135 -13.49584 -13.37041 -13.02159 -12.82920 -12.74910 -12.36218 -12.33174 -12.08657 -11.84134 -11.65274 -11.39114 -11.21517 -11.16889 -10.82105 -10.78195 -10.59388 -10.46649 -10.43259 -9.94602 -9.37739 -9.10732 -9.01538 -8.88162 -8.58086 -8.23631 -7.25506 -6.49770 -4.08475 1.08227 1.22039 2.14518 2.19880 2.36354 3.09281 3.11578 3.16835 3.17066 3.59755 3.87201 3.93421 4.39311 4.56587 4.58452 4.71702 4.81941 4.92183 4.96817 5.05243 5.18054 5.24603 5.29386 5.31851 5.42508 5.55677 5.57759 5.68863 5.75929 5.78568 5.82378 5.87278 6.04458 6.15388 6.23984 6.32068 6.35047 6.37026 6.44845 6.62517 6.70536 6.79526 6.85006 6.96642 7.01175 7.09408 7.22280 7.34778 7.39713 7.76262 7.94799 7.95441 8.96168 9.65253 10.68141 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016277 B = 0.002378 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.855618 B =11770.412020 C =12526.549481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.141 3.859 3 N -0.662 5.662 4 C 0.107 3.893 5 C -0.187 4.187 6 C -0.069 4.069 7 C -0.193 4.193 8 C 0.157 3.843 9 O -0.177 6.177 10 C -0.391 4.391 11 H 0.093 0.907 12 C 0.039 3.961 13 N -0.862 5.862 14 Si 0.941 3.059 15 H -0.266 1.266 16 H -0.276 1.276 17 H -0.275 1.275 18 C -0.235 4.235 19 C -0.046 4.046 20 C 0.501 3.499 21 N -0.854 5.854 22 O -0.540 6.540 23 C -0.078 4.078 24 C -0.096 4.096 25 C -0.121 4.121 26 C -0.119 4.119 27 C -0.123 4.123 28 C -0.108 4.108 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.342 0.658 33 H 0.080 0.920 34 H 0.035 0.965 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.270 0.730 38 H 0.127 0.873 39 H 0.108 0.892 40 H 0.402 0.598 41 H 0.400 0.600 42 H 0.138 0.862 43 H 0.124 0.876 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.861 -21.549 -4.675 22.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.047 3.953 3 N -0.296 5.296 4 C -0.020 4.020 5 C -0.188 4.188 6 C -0.087 4.087 7 C -0.213 4.213 8 C 0.103 3.897 9 O -0.080 6.080 10 C -0.467 4.467 11 H 0.111 0.889 12 C -0.165 4.165 13 N -0.497 5.497 14 Si 0.766 3.234 15 H -0.190 1.190 16 H -0.201 1.201 17 H -0.201 1.201 18 C -0.254 4.254 19 C -0.064 4.064 20 C 0.283 3.717 21 N -0.418 5.418 22 O -0.415 6.415 23 C -0.079 4.079 24 C -0.114 4.114 25 C -0.140 4.140 26 C -0.137 4.137 27 C -0.141 4.141 28 C -0.127 4.127 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.163 0.837 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.124 0.876 36 H 0.134 0.866 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.126 0.874 40 H 0.233 0.767 41 H 0.229 0.771 42 H 0.156 0.844 43 H 0.142 0.858 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.620 -21.488 -4.725 22.297 hybrid contribution 0.577 0.446 0.289 0.784 sum -3.043 -21.042 -4.436 21.718 Atomic orbital electron populations 1.21749 0.90209 1.03063 1.03245 1.20066 0.97858 0.87834 0.89581 1.60813 1.16310 1.09867 1.42622 1.20845 1.00468 0.91268 0.89421 1.18994 0.97848 0.93703 1.08300 1.20440 0.94860 0.95143 0.98298 1.20157 1.01423 0.91723 1.07973 1.19411 0.91756 0.85938 0.92623 1.83976 1.48636 1.13226 1.62150 1.21387 1.04140 0.90308 1.30905 0.88934 1.25300 0.96494 0.97212 0.97513 1.70048 1.18444 1.19624 1.41540 0.85644 0.79106 0.79740 0.78941 1.19036 1.20138 1.20102 1.21175 0.98435 0.97289 1.08494 1.20575 0.98055 0.92001 0.95809 1.21637 0.81306 0.82421 0.86301 1.43946 1.18888 1.45795 1.33148 1.90715 1.56134 1.33816 1.60798 1.19391 0.99123 0.93889 0.95457 1.21169 0.96158 1.00567 0.93511 1.21208 1.00199 0.94796 0.97750 1.21204 0.98287 0.94998 0.99198 1.21089 0.98502 0.99913 0.94562 1.21061 0.99716 0.94074 0.97801 0.91637 0.90575 0.91099 0.83723 0.90183 0.94710 0.87640 0.86623 0.92026 0.85563 0.87396 0.76714 0.77132 0.84384 0.85804 0.86190 0.86093 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 7.58 37.16 0.28 -1.06 16 2 C 0.14 1.49 0.75 -133.91 -0.10 1.39 16 3 N -0.66 -7.04 4.92 -103.58 -0.51 -7.55 16 4 C 0.11 1.30 5.06 -4.98 -0.03 1.28 16 5 C -0.19 -2.86 5.40 -104.58 -0.56 -3.42 16 6 C -0.07 -1.09 9.69 -39.61 -0.38 -1.47 16 7 C -0.19 -3.82 9.99 -39.39 -0.39 -4.21 16 8 C 0.16 3.63 6.65 -39.10 -0.26 3.37 16 9 O -0.18 -4.91 9.76 0.05 0.00 -4.91 16 10 C -0.39 -10.68 9.49 30.88 0.29 -10.38 16 11 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 12 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 13 N -0.86 -24.83 13.67 55.48 0.76 -24.07 16 14 Si 0.94 20.15 29.55 -169.99 -5.02 15.13 16 15 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 16 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 18 C -0.23 -4.87 9.17 -39.39 -0.36 -5.23 16 19 C -0.05 -0.79 9.69 -39.61 -0.38 -1.17 16 20 C 0.50 5.70 5.38 -10.98 -0.06 5.64 16 21 N -0.85 -7.21 8.00 31.22 0.25 -6.96 16 22 O -0.54 -7.88 16.93 5.56 0.09 -7.79 16 23 C -0.08 -0.80 4.76 -104.63 -0.50 -1.30 16 24 C -0.10 -0.94 9.14 -39.59 -0.36 -1.30 16 25 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 26 C -0.12 -1.00 10.05 -39.59 -0.40 -1.40 16 27 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 28 C -0.11 -1.09 8.82 -39.58 -0.35 -1.44 16 29 H 0.06 0.72 6.40 -51.93 -0.33 0.38 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.76 7.12 -51.93 -0.37 0.39 16 32 H 0.34 3.32 6.15 -39.29 -0.24 3.08 16 33 H 0.08 0.99 6.25 -51.93 -0.32 0.66 16 34 H 0.03 0.41 6.50 -51.93 -0.34 0.07 16 35 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 37 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 39 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.40 2.94 8.93 -40.82 -0.36 2.57 16 41 H 0.40 2.75 7.30 -40.82 -0.30 2.46 16 42 H 0.14 1.34 6.41 -52.48 -0.34 1.00 16 43 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 44 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 46 H 0.12 1.28 7.58 -52.49 -0.40 0.88 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -31.96 379.64 -8.83 -40.79 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -5.67 Total: 12.37 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -4.45 Total: -22.72 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.50 Total: -38.59 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.96 -8.83 -40.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731212409.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.612 kcal (2) G-P(sol) polarization free energy of solvation -31.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds