Wall clock time and date at job start Sat Apr 11 2020 06:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47349 * 2 1 4 4 C 1.46904 * 111.00311 * 59.99626 * 3 2 1 5 5 C 1.50693 * 109.47362 * 180.02562 * 4 3 2 6 6 C 1.38299 * 119.92616 * 269.72889 * 5 4 3 7 7 C 1.38106 * 120.06877 * 179.72630 * 6 5 4 8 8 C 1.38885 * 119.92780 * 0.56473 * 7 6 5 9 9 O 1.35753 * 120.06794 * 179.68196 * 8 7 6 10 10 C 1.34828 * 116.99625 * 174.48805 * 9 8 7 11 11 H 1.08004 * 119.99995 * 5.05694 * 10 9 8 12 12 C 1.38649 * 119.99969 * 185.05845 * 10 9 8 13 13 N 1.31560 * 119.99855 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00354 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46994 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47226 * 119.99727 * 14 12 10 17 17 H 1.48499 * 109.47057 * 240.00111 * 14 12 10 18 18 C 1.38882 * 119.86023 * 359.70791 * 8 7 6 19 19 C 1.38098 * 119.93391 * 359.97438 * 18 8 7 20 20 C 1.50704 * 109.46896 * 119.99747 * 2 1 3 21 21 N 1.34778 * 119.99607 * 205.27617 * 20 2 1 22 22 O 1.21276 * 120.00422 * 24.99816 * 20 2 1 23 23 C 1.50700 * 109.47321 * 239.99535 * 2 1 3 24 24 C 1.38230 * 120.00036 * 119.72605 * 23 2 1 25 25 C 1.38234 * 120.00079 * 179.76624 * 24 23 2 26 26 C 1.38227 * 119.99910 * 0.51123 * 25 24 23 27 27 C 1.38237 * 120.00275 * 359.74101 * 26 25 24 28 28 C 1.38234 * 119.99806 * 300.00369 * 23 2 1 29 29 H 1.09001 * 109.47355 * 300.00494 * 1 2 3 30 30 H 1.08996 * 109.47073 * 60.00535 * 1 2 3 31 31 H 1.08999 * 109.47194 * 180.02562 * 1 2 3 32 32 H 1.00894 * 111.00111 * 183.95657 * 3 2 1 33 33 H 1.09002 * 109.46741 * 300.00398 * 4 3 2 34 34 H 1.08997 * 109.46881 * 59.99978 * 4 3 2 35 35 H 1.07994 * 119.97111 * 359.97438 * 6 5 4 36 36 H 1.07998 * 120.03814 * 180.27275 * 7 6 5 37 37 H 0.97002 * 119.99942 * 179.97438 * 13 12 10 38 38 H 1.07998 * 120.03214 * 179.97438 * 18 8 7 39 39 H 1.07999 * 119.96876 * 180.02562 * 19 18 8 40 40 H 0.97008 * 119.99914 * 179.72799 * 21 20 2 41 41 H 0.96995 * 120.00518 * 359.72065 * 21 20 2 42 42 H 1.08007 * 119.99948 * 0.02562 * 24 23 2 43 43 H 1.08006 * 119.99795 * 180.22949 * 25 24 23 44 44 H 1.08006 * 120.00199 * 179.72222 * 26 25 24 45 45 H 1.07999 * 120.00173 * 179.97438 * 27 26 25 46 46 H 1.07994 * 120.00282 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5487 2.1100 1.1877 5 6 2.0693 3.5237 1.1525 6 6 3.2839 3.8264 1.7405 7 6 3.7665 5.1199 1.7051 8 6 3.0252 6.1195 1.0884 9 8 3.4938 7.3931 1.0576 10 6 2.7820 8.2902 0.3460 11 1 1.8408 8.0022 -0.0988 12 6 3.2581 9.5824 0.1850 13 7 4.4043 9.9333 0.7272 14 14 2.2716 10.8255 -0.8003 15 1 1.0277 10.1862 -1.2997 16 1 1.9210 11.9787 0.0671 17 1 3.0815 11.2998 -1.9511 18 6 1.8032 5.8132 0.5038 19 6 1.3291 4.5166 0.5368 20 6 2.0323 -0.7104 1.2305 21 7 3.2520 -0.4205 1.7252 22 8 1.3370 -1.5392 1.7786 23 6 2.0324 -0.7105 -1.2304 24 6 2.8224 -0.0371 -2.1432 25 6 3.2872 -0.6902 -3.2693 26 6 2.9533 -2.0136 -3.4880 27 6 2.1589 -2.6856 -2.5779 28 6 1.6984 -2.0339 -1.4490 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.0262 1.4126 -0.0650 33 1 0.4588 2.1246 1.1958 34 1 1.9120 1.6108 2.0859 35 1 3.8575 3.0499 2.2244 36 1 4.7171 5.3549 2.1606 37 1 4.7376 10.8372 0.6143 38 1 1.2242 6.5884 0.0238 39 1 0.3791 4.2778 0.0820 40 1 3.5738 -0.8749 2.5196 41 1 3.8082 0.2424 1.2870 42 1 3.0800 0.9981 -1.9744 43 1 3.9076 -0.1651 -3.9806 44 1 3.3127 -2.5226 -4.3702 45 1 1.8976 -3.7194 -2.7490 46 1 1.0778 -2.5588 -0.7380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731212409.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:15 Heat of formation + Delta-G solvation = -26.702314 kcal Electronic energy + Delta-G solvation = -28681.335798 eV Core-core repulsion = 24728.691465 eV Total energy + Delta-G solvation = -3952.644333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.84903 -40.71431 -39.61982 -38.62166 -37.09261 -34.59130 -34.36020 -33.29565 -31.84539 -31.74668 -30.68796 -29.60805 -27.56153 -26.30243 -24.76534 -23.58642 -23.33510 -23.01917 -21.94219 -20.46324 -19.82319 -18.85991 -18.83369 -18.31900 -17.89802 -16.71991 -16.45587 -16.32505 -16.07060 -15.72569 -15.59089 -15.51800 -15.44121 -15.18997 -14.94409 -14.64567 -14.49526 -14.25726 -14.14421 -13.63476 -13.59343 -13.35937 -13.18245 -13.04825 -12.92229 -12.75783 -12.42101 -12.31913 -12.10874 -12.06283 -11.99336 -11.77171 -11.36908 -11.13285 -10.79138 -10.75262 -9.82005 -9.75917 -9.72537 -9.46483 -8.89843 -8.46081 -6.13556 0.37710 0.52156 0.64205 0.68815 1.36480 1.43815 1.48485 1.54187 2.18650 2.38569 2.74367 2.89973 3.01922 3.30171 3.54889 3.60020 3.79986 3.92767 4.06606 4.09687 4.17807 4.19351 4.24404 4.33629 4.44919 4.58113 4.62153 4.63623 4.72378 4.77931 4.83642 4.89964 5.08406 5.10591 5.17225 5.18805 5.21648 5.33220 5.49878 5.58569 5.61429 5.66525 5.72563 5.75474 5.82613 5.88802 6.05354 6.11368 6.17068 6.25767 6.34179 6.99481 7.16302 7.80623 8.77283 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016277 B = 0.002378 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.855618 B =11770.412020 C =12526.549481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.150 3.850 3 N -0.659 5.659 4 C 0.113 3.887 5 C -0.155 4.155 6 C -0.056 4.056 7 C -0.203 4.203 8 C 0.115 3.885 9 O -0.233 6.233 10 C -0.410 4.410 11 H 0.101 0.899 12 C -0.023 4.023 13 N -0.921 5.921 14 Si 1.016 2.984 15 H -0.252 1.252 16 H -0.270 1.270 17 H -0.269 1.269 18 C -0.244 4.244 19 C -0.046 4.046 20 C 0.499 3.501 21 N -0.840 5.840 22 O -0.575 6.575 23 C -0.086 4.086 24 C -0.105 4.105 25 C -0.127 4.127 26 C -0.120 4.120 27 C -0.126 4.126 28 C -0.121 4.121 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.350 0.650 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.151 0.849 36 H 0.113 0.887 37 H 0.272 0.728 38 H 0.114 0.886 39 H 0.134 0.866 40 H 0.409 0.591 41 H 0.409 0.591 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.139 0.861 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.681 -24.141 -5.732 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.055 3.945 3 N -0.294 5.294 4 C -0.015 4.015 5 C -0.156 4.156 6 C -0.074 4.074 7 C -0.222 4.222 8 C 0.065 3.935 9 O -0.139 6.139 10 C -0.486 4.486 11 H 0.118 0.882 12 C -0.220 4.220 13 N -0.559 5.559 14 Si 0.836 3.164 15 H -0.175 1.175 16 H -0.195 1.195 17 H -0.194 1.194 18 C -0.263 4.263 19 C -0.065 4.065 20 C 0.282 3.718 21 N -0.404 5.404 22 O -0.453 6.453 23 C -0.087 4.087 24 C -0.123 4.123 25 C -0.145 4.145 26 C -0.138 4.138 27 C -0.144 4.144 28 C -0.140 4.140 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.172 0.828 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.168 0.832 36 H 0.131 0.869 37 H 0.081 0.919 38 H 0.132 0.868 39 H 0.152 0.848 40 H 0.242 0.758 41 H 0.240 0.760 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.161 0.839 45 H 0.157 0.843 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.429 -24.130 -5.780 25.205 hybrid contribution 0.801 0.807 0.648 1.309 sum -3.628 -23.323 -5.131 24.155 Atomic orbital electron populations 1.21748 0.90496 1.02918 1.03198 1.19951 0.97644 0.87277 0.89609 1.60696 1.17006 1.10098 1.41574 1.20787 1.00894 0.89186 0.90639 1.19399 0.96562 0.95012 1.04659 1.20873 0.95071 0.94354 0.97099 1.20434 1.01400 0.92693 1.07669 1.19991 0.93413 0.85467 0.94659 1.83940 1.50321 1.15123 1.64549 1.21829 1.04623 0.90997 1.31165 0.88182 1.26543 0.97686 0.99131 0.98664 1.70185 1.20904 1.20346 1.44482 0.84556 0.77852 0.76713 0.77285 1.17516 1.19472 1.19354 1.21235 0.97779 0.98710 1.08584 1.20882 0.99212 0.90764 0.95625 1.21765 0.81741 0.82048 0.86239 1.43849 1.18010 1.45464 1.33081 1.90708 1.57354 1.35462 1.61808 1.19363 0.99760 0.94041 0.95509 1.21227 0.96469 1.00639 0.93930 1.21474 1.00109 0.95210 0.97707 1.21509 0.97629 0.94914 0.99726 1.21355 0.98130 1.00849 0.94080 1.21113 1.00233 0.94241 0.98380 0.91834 0.90333 0.91439 0.82795 0.89577 0.93393 0.83184 0.86881 0.91897 0.86782 0.84784 0.75833 0.75980 0.84386 0.84272 0.83936 0.84330 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 7.58 71.98 0.55 -1.90 16 2 C 0.15 2.78 0.75 2.04 0.00 2.78 16 3 N -0.66 -11.79 4.92 -481.63 -2.37 -14.16 16 4 C 0.11 2.29 5.06 85.55 0.43 2.72 16 5 C -0.16 -4.22 5.40 -19.84 -0.11 -4.32 16 6 C -0.06 -1.59 9.69 22.25 0.22 -1.38 16 7 C -0.20 -7.95 9.99 22.39 0.22 -7.72 16 8 C 0.12 5.49 6.65 22.58 0.15 5.64 16 9 O -0.23 -13.71 9.76 -22.75 -0.22 -13.93 16 10 C -0.41 -23.53 9.49 67.92 0.64 -22.88 16 11 H 0.10 5.30 5.20 -2.91 -0.02 5.28 16 12 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 13 N -0.92 -55.95 13.67 21.61 0.30 -55.65 16 14 Si 1.02 42.48 29.55 68.60 2.03 44.50 16 15 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 16 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 17 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 18 C -0.24 -10.19 9.17 22.39 0.21 -9.98 16 19 C -0.05 -1.49 9.69 22.25 0.22 -1.28 16 20 C 0.50 10.13 5.38 87.66 0.47 10.60 16 21 N -0.84 -11.55 8.00 -173.53 -1.39 -12.94 16 22 O -0.58 -15.87 16.93 -3.02 -0.05 -15.92 16 23 C -0.09 -1.58 4.76 -19.87 -0.09 -1.67 16 24 C -0.10 -1.80 9.14 22.27 0.20 -1.59 16 25 C -0.13 -1.93 10.05 22.27 0.22 -1.70 16 26 C -0.12 -1.67 10.05 22.27 0.22 -1.45 16 27 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 28 C -0.12 -2.24 8.82 22.27 0.20 -2.05 16 29 H 0.06 1.24 6.40 -2.39 -0.02 1.23 16 30 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.36 7.12 -2.39 -0.02 1.34 16 32 H 0.35 5.46 6.15 -89.70 -0.55 4.90 16 33 H 0.09 1.77 6.25 -2.39 -0.01 1.75 16 34 H 0.05 0.90 6.50 -2.39 -0.02 0.89 16 35 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 36 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 37 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.11 4.96 5.64 -2.91 -0.02 4.94 16 39 H 0.13 3.65 8.06 -2.91 -0.02 3.62 16 40 H 0.41 4.76 8.93 -92.70 -0.83 3.93 16 41 H 0.41 4.08 7.30 -92.71 -0.68 3.40 16 42 H 0.14 2.31 6.41 -2.91 -0.02 2.29 16 43 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 44 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 45 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 46 H 0.12 2.29 7.58 -2.91 -0.02 2.27 16 Total: -1.00 -74.35 379.64 1.73 -72.62 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: -1.00 Total: 34.20 kcal Atomic # 6 Polarization: -43.17 SS G_CDS: 4.44 Total: -38.73 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -3.46 Total: -82.74 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.27 Total: -29.85 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -74.35 1.73 -72.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731212409.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.913 kcal (2) G-P(sol) polarization free energy of solvation -74.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds