Wall clock time and date at job start Sat Apr 11 2020 06:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 S 1.77230 * 127.33711 * 2 1 4 4 C 1.72213 * 94.84563 * 179.80658 * 3 2 1 5 5 O 1.21825 * 127.05509 * 180.20004 * 4 3 2 6 6 N 1.34247 * 105.88386 * 0.32079 * 4 3 2 7 7 C 1.46502 * 121.37600 * 179.88068 * 6 4 3 8 8 C 1.52999 * 109.46902 * 269.71282 * 7 6 4 9 9 C 1.50694 * 109.46909 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00192 * 354.45977 * 9 8 7 11 11 N 1.34778 * 120.00206 * 174.73727 * 9 8 7 12 12 C 1.46495 * 120.00598 * 185.28902 * 11 9 8 13 13 C 1.50704 * 109.46945 * 89.99961 * 12 11 9 14 14 H 1.07997 * 119.99759 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99765 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00433 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99786 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47035 * 59.99974 * 17 15 13 19 19 H 1.48502 * 109.46844 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46914 * 299.99991 * 17 15 13 21 21 C 1.46502 * 119.99851 * 5.29416 * 11 9 8 22 22 C 1.53000 * 109.47590 * 96.68978 * 21 11 9 23 23 C 1.53000 * 109.47325 * 174.11638 * 22 21 11 24 24 C 1.53000 * 109.46838 * 294.11427 * 22 21 11 25 25 C 1.32563 * 127.34345 * 179.97438 * 2 1 3 26 26 C 1.50697 * 121.64358 * 0.02924 * 25 2 1 27 27 H 1.08992 * 109.46972 * 270.00274 * 1 2 3 28 28 H 1.08997 * 109.46805 * 30.00708 * 1 2 3 29 29 H 1.08996 * 109.46597 * 149.99926 * 1 2 3 30 30 H 1.09000 * 109.46775 * 149.72005 * 7 6 4 31 31 H 1.08997 * 109.47191 * 29.71802 * 7 6 4 32 32 H 1.09000 * 109.46815 * 60.00748 * 8 7 6 33 33 H 1.09000 * 109.47353 * 300.00717 * 8 7 6 34 34 H 1.09002 * 109.47859 * 209.99961 * 12 11 9 35 35 H 1.09002 * 109.46920 * 330.00519 * 12 11 9 36 36 H 0.97001 * 120.00109 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.47059 * 216.69025 * 21 11 9 38 38 H 1.08999 * 109.47027 * 336.68750 * 21 11 9 39 39 H 1.08997 * 109.46877 * 54.10902 * 22 21 11 40 40 H 1.08997 * 109.47230 * 59.99904 * 23 22 21 41 41 H 1.09002 * 109.46947 * 180.02562 * 23 22 21 42 42 H 1.09006 * 109.46916 * 299.99925 * 23 22 21 43 43 H 1.08997 * 109.47350 * 304.71998 * 24 22 21 44 44 H 1.09000 * 109.47344 * 64.71670 * 24 22 21 45 45 H 1.09004 * 109.47635 * 184.72032 * 24 22 21 46 46 H 1.08997 * 109.47445 * 269.97553 * 26 25 2 47 47 H 1.09000 * 109.47222 * 29.97345 * 26 25 2 48 48 H 1.09000 * 109.47153 * 149.97388 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5820 1.4091 0.0000 4 6 4.0345 0.4840 0.0058 5 8 5.1760 0.9098 0.0114 6 7 3.6509 -0.8024 0.0002 7 6 4.6315 -1.8908 0.0002 8 6 4.9728 -2.2698 -1.4423 9 6 5.9810 -3.3898 -1.4422 10 8 6.4620 -3.7727 -0.3968 11 7 6.3524 -3.9623 -2.6044 12 6 7.2426 -5.1257 -2.5964 13 6 6.4204 -6.3869 -2.5292 14 1 5.3426 -6.3277 -2.4963 15 6 7.0443 -7.6163 -2.5099 16 7 8.3569 -7.6884 -2.5496 17 14 6.0251 -9.1797 -2.4273 18 1 5.1301 -9.2501 -3.6101 19 1 6.9276 -10.3590 -2.4191 20 1 5.2075 -9.1726 -1.1876 21 6 5.8659 -3.4211 -3.8759 22 6 6.9190 -2.4815 -4.4667 23 6 6.4766 -2.0314 -5.8605 24 6 7.0760 -1.2580 -3.5616 25 6 2.3112 -1.0539 0.0005 26 6 1.7708 -2.4606 0.0004 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3632 -0.8900 -0.5138 30 1 4.2134 -2.7565 0.5140 31 1 5.5358 -1.5651 0.5141 32 1 5.3909 -1.4042 -1.9561 33 1 4.0683 -2.5955 -1.9561 34 1 7.8421 -5.1309 -3.5068 35 1 7.9002 -5.0740 -1.7286 36 1 8.7958 -8.5534 -2.5363 37 1 5.6782 -4.2394 -4.5711 38 1 4.9413 -2.8694 -3.7059 39 1 7.8726 -3.0044 -4.5393 40 1 5.5231 -1.5085 -5.7878 41 1 7.2272 -1.3624 -6.2815 42 1 6.3648 -2.9032 -6.5053 43 1 6.1051 -0.7829 -3.4212 44 1 7.4711 -1.5695 -2.5947 45 1 7.7636 -0.5497 -4.0239 46 1 1.6405 -2.7999 1.0280 47 1 0.8097 -2.4807 -0.5134 48 1 2.4713 -3.1189 -0.5134 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734427299.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:19 Heat of formation + Delta-G solvation = -57.331128 kcal Electronic energy + Delta-G solvation = -28519.121418 eV Core-core repulsion = 24700.592872 eV Total energy + Delta-G solvation = -3818.528546 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.18994 -39.32495 -37.78735 -36.40603 -34.25519 -33.66284 -32.35868 -31.72759 -29.86581 -28.03220 -27.10821 -26.51059 -25.49691 -24.65536 -23.16463 -21.87271 -20.26115 -19.88307 -18.39453 -18.36044 -17.27923 -16.52125 -16.36469 -16.09955 -15.51119 -15.30863 -15.09250 -14.45135 -14.23016 -14.18928 -14.13932 -13.88931 -13.63948 -13.42593 -13.17380 -12.89537 -12.77413 -12.69824 -12.49405 -12.26262 -12.13116 -11.96770 -11.73483 -11.40939 -11.23047 -11.15540 -11.09770 -10.97221 -10.85578 -10.76021 -10.56807 -10.41395 -10.18351 -10.13708 -9.68317 -9.58437 -9.01300 -8.47773 -8.02001 -7.70563 -6.08673 -4.14247 0.81887 1.19449 1.60194 2.04096 2.63052 3.26764 3.27937 3.32498 3.35406 3.84967 4.31850 4.40347 4.68937 4.79222 4.84844 4.90890 5.01939 5.02949 5.07864 5.12056 5.16718 5.25291 5.30566 5.36090 5.41080 5.46130 5.51969 5.60799 5.63364 5.68429 5.72910 5.84087 5.90961 5.98454 6.04862 6.08387 6.16422 6.25469 6.44828 6.53599 6.64622 7.01284 7.22211 7.41265 7.48166 7.87003 8.18240 8.34153 8.82547 8.99263 9.50900 10.99282 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012028 B = 0.003334 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.310619 B = 8396.429621 C = 9549.564686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.214 4.214 3 S -0.012 6.012 4 C 0.482 3.518 5 O -0.470 6.470 6 N -0.529 5.529 7 C 0.117 3.883 8 C -0.168 4.168 9 C 0.515 3.485 10 O -0.544 6.544 11 N -0.592 5.592 12 C 0.247 3.753 13 C -0.529 4.529 14 H 0.056 0.944 15 C 0.062 3.938 16 N -0.893 5.893 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.115 3.885 22 C -0.117 4.117 23 C -0.142 4.142 24 C -0.147 4.147 25 C 0.104 3.896 26 C -0.105 4.105 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.032 0.968 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.044 15.241 -0.180 22.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.334 4.334 3 S 0.231 5.769 4 C 0.164 3.836 5 O -0.349 6.349 6 N -0.249 5.249 7 C -0.008 4.008 8 C -0.208 4.208 9 C 0.300 3.700 10 O -0.422 6.422 11 N -0.322 5.322 12 C 0.128 3.872 13 C -0.568 4.568 14 H 0.074 0.926 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.725 3.275 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 C -0.009 4.009 22 C -0.136 4.136 23 C -0.200 4.200 24 C -0.204 4.204 25 C -0.006 4.006 26 C -0.164 4.164 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.105 0.895 47 H 0.109 0.891 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.036 16.477 0.368 22.309 hybrid contribution -0.114 -2.272 -0.120 2.278 sum -15.150 14.205 0.248 20.770 Atomic orbital electron populations 1.20088 0.85840 1.03200 1.02738 1.23435 0.99569 0.91942 1.18486 1.85022 0.98543 1.11757 1.81610 1.21511 0.94433 0.84850 0.82793 1.90980 1.19150 1.71690 1.53076 1.46139 1.06289 1.07959 1.64511 1.21673 0.92611 0.88870 0.97630 1.22281 1.00596 1.00187 0.97780 1.19895 0.82760 0.82876 0.84421 1.90684 1.56001 1.64345 1.31165 1.48167 1.48685 1.31268 1.04124 1.19273 0.88945 0.80563 0.98462 1.21376 0.93289 0.90717 1.51428 0.92560 1.24932 0.94950 0.99092 0.95028 1.69923 1.07825 1.25373 1.50045 0.86572 0.79950 0.82365 0.78600 1.20249 1.21146 1.20198 1.21565 0.95560 0.96992 0.86825 1.21565 1.00699 0.96429 0.94931 1.21758 1.00942 1.01140 0.96136 1.21952 1.01009 0.97345 1.00109 1.19341 0.82169 0.98195 1.00939 1.20842 1.02243 0.89173 1.04190 0.90787 0.91001 0.90295 0.88028 0.87741 0.88040 0.89110 0.94995 0.93746 0.92606 0.90075 0.91650 0.90306 0.92947 0.92756 0.92402 0.93056 0.92498 0.92803 0.89461 0.89122 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.33 10.10 36.01 0.36 0.03 16 2 C -0.21 -1.93 6.72 -36.21 -0.24 -2.18 16 3 S -0.01 -0.14 22.97 -107.50 -2.47 -2.61 16 4 C 0.48 6.91 8.27 53.82 0.45 7.36 16 5 O -0.47 -8.24 17.55 5.08 0.09 -8.15 16 6 N -0.53 -6.67 2.60 -117.28 -0.31 -6.98 16 7 C 0.12 1.64 4.29 -4.04 -0.02 1.62 16 8 C -0.17 -2.45 4.28 -27.89 -0.12 -2.57 16 9 C 0.51 10.19 6.45 -10.99 -0.07 10.11 16 10 O -0.54 -13.01 15.54 5.56 0.09 -12.93 16 11 N -0.59 -11.99 2.26 -175.06 -0.40 -12.39 16 12 C 0.25 6.27 5.22 -5.19 -0.03 6.25 16 13 C -0.53 -14.52 9.39 -34.44 -0.32 -14.84 16 14 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 17 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.11 1.81 4.89 -4.04 -0.02 1.79 16 22 C -0.12 -1.65 3.11 -90.62 -0.28 -1.93 16 23 C -0.14 -1.60 9.19 37.16 0.34 -1.26 16 24 C -0.15 -2.04 7.59 37.16 0.28 -1.76 16 25 C 0.10 1.04 6.59 -82.51 -0.54 0.49 16 26 C -0.11 -0.79 9.07 36.00 0.33 -0.47 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.33 6.77 -51.93 -0.35 -0.03 16 30 H 0.10 1.35 6.83 -51.93 -0.35 1.00 16 31 H 0.10 1.68 7.69 -51.93 -0.40 1.28 16 32 H 0.10 1.47 4.79 -51.93 -0.25 1.22 16 33 H 0.09 1.14 6.74 -51.93 -0.35 0.79 16 34 H 0.03 0.83 7.94 -51.93 -0.41 0.42 16 35 H 0.04 1.29 7.35 -51.93 -0.38 0.91 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 38 H 0.07 0.87 6.10 -51.93 -0.32 0.55 16 39 H 0.08 1.27 8.01 -51.93 -0.42 0.85 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.66 6.49 -51.93 -0.34 0.32 16 44 H 0.06 0.92 6.87 -51.93 -0.36 0.57 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.09 0.48 6.69 -51.93 -0.35 0.13 16 48 H 0.08 0.71 6.22 -51.93 -0.32 0.39 16 LS Contribution 395.39 15.07 5.96 5.96 Total: -1.00 -33.38 395.39 -8.83 -42.20 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -7.52 Total: -0.23 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 0.02 Total: 4.29 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.04 Total: -44.77 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: 0.18 Total: -21.08 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -2.47 Total: -2.61 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.38 -8.83 -42.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734427299.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.131 kcal (2) G-P(sol) polarization free energy of solvation -33.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds