Wall clock time and date at job start Sat Apr 11 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 S 1.77230 * 127.33711 * 2 1 4 4 C 1.72213 * 94.84563 * 179.80658 * 3 2 1 5 5 O 1.21825 * 127.05509 * 180.20004 * 4 3 2 6 6 N 1.34247 * 105.88386 * 0.32079 * 4 3 2 7 7 C 1.46502 * 121.37600 * 179.88068 * 6 4 3 8 8 C 1.52999 * 109.46902 * 269.71282 * 7 6 4 9 9 C 1.50694 * 109.46909 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00192 * 354.45977 * 9 8 7 11 11 N 1.34778 * 120.00206 * 174.73727 * 9 8 7 12 12 C 1.46495 * 120.00598 * 185.28902 * 11 9 8 13 13 C 1.50704 * 109.46945 * 89.99961 * 12 11 9 14 14 H 1.07997 * 119.99759 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99765 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00433 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99786 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47035 * 59.99974 * 17 15 13 19 19 H 1.48502 * 109.46844 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46914 * 299.99991 * 17 15 13 21 21 C 1.46502 * 119.99851 * 5.29416 * 11 9 8 22 22 C 1.53000 * 109.47590 * 96.68978 * 21 11 9 23 23 C 1.53000 * 109.47325 * 174.11638 * 22 21 11 24 24 C 1.53000 * 109.46838 * 294.11427 * 22 21 11 25 25 C 1.32563 * 127.34345 * 179.97438 * 2 1 3 26 26 C 1.50697 * 121.64358 * 0.02924 * 25 2 1 27 27 H 1.08992 * 109.46972 * 270.00274 * 1 2 3 28 28 H 1.08997 * 109.46805 * 30.00708 * 1 2 3 29 29 H 1.08996 * 109.46597 * 149.99926 * 1 2 3 30 30 H 1.09000 * 109.46775 * 149.72005 * 7 6 4 31 31 H 1.08997 * 109.47191 * 29.71802 * 7 6 4 32 32 H 1.09000 * 109.46815 * 60.00748 * 8 7 6 33 33 H 1.09000 * 109.47353 * 300.00717 * 8 7 6 34 34 H 1.09002 * 109.47859 * 209.99961 * 12 11 9 35 35 H 1.09002 * 109.46920 * 330.00519 * 12 11 9 36 36 H 0.97001 * 120.00109 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.47059 * 216.69025 * 21 11 9 38 38 H 1.08999 * 109.47027 * 336.68750 * 21 11 9 39 39 H 1.08997 * 109.46877 * 54.10902 * 22 21 11 40 40 H 1.08997 * 109.47230 * 59.99904 * 23 22 21 41 41 H 1.09002 * 109.46947 * 180.02562 * 23 22 21 42 42 H 1.09006 * 109.46916 * 299.99925 * 23 22 21 43 43 H 1.08997 * 109.47350 * 304.71998 * 24 22 21 44 44 H 1.09000 * 109.47344 * 64.71670 * 24 22 21 45 45 H 1.09004 * 109.47635 * 184.72032 * 24 22 21 46 46 H 1.08997 * 109.47445 * 269.97553 * 26 25 2 47 47 H 1.09000 * 109.47222 * 29.97345 * 26 25 2 48 48 H 1.09000 * 109.47153 * 149.97388 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5820 1.4091 0.0000 4 6 4.0345 0.4840 0.0058 5 8 5.1760 0.9098 0.0114 6 7 3.6509 -0.8024 0.0002 7 6 4.6315 -1.8908 0.0002 8 6 4.9728 -2.2698 -1.4423 9 6 5.9810 -3.3898 -1.4422 10 8 6.4620 -3.7727 -0.3968 11 7 6.3524 -3.9623 -2.6044 12 6 7.2426 -5.1257 -2.5964 13 6 6.4204 -6.3869 -2.5292 14 1 5.3426 -6.3277 -2.4963 15 6 7.0443 -7.6163 -2.5099 16 7 8.3569 -7.6884 -2.5496 17 14 6.0251 -9.1797 -2.4273 18 1 5.1301 -9.2501 -3.6101 19 1 6.9276 -10.3590 -2.4191 20 1 5.2075 -9.1726 -1.1876 21 6 5.8659 -3.4211 -3.8759 22 6 6.9190 -2.4815 -4.4667 23 6 6.4766 -2.0314 -5.8605 24 6 7.0760 -1.2580 -3.5616 25 6 2.3112 -1.0539 0.0005 26 6 1.7708 -2.4606 0.0004 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3632 -0.8900 -0.5138 30 1 4.2134 -2.7565 0.5140 31 1 5.5358 -1.5651 0.5141 32 1 5.3909 -1.4042 -1.9561 33 1 4.0683 -2.5955 -1.9561 34 1 7.8421 -5.1309 -3.5068 35 1 7.9002 -5.0740 -1.7286 36 1 8.7958 -8.5534 -2.5363 37 1 5.6782 -4.2394 -4.5711 38 1 4.9413 -2.8694 -3.7059 39 1 7.8726 -3.0044 -4.5393 40 1 5.5231 -1.5085 -5.7878 41 1 7.2272 -1.3624 -6.2815 42 1 6.3648 -2.9032 -6.5053 43 1 6.1051 -0.7829 -3.4212 44 1 7.4711 -1.5695 -2.5947 45 1 7.7636 -0.5497 -4.0239 46 1 1.6405 -2.7999 1.0280 47 1 0.8097 -2.4807 -0.5134 48 1 2.4713 -3.1189 -0.5134 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734427299.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:18 Heat of formation + Delta-G solvation = -77.158162 kcal Electronic energy + Delta-G solvation = -28519.981183 eV Core-core repulsion = 24700.592872 eV Total energy + Delta-G solvation = -3819.388311 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.19443 -40.87842 -38.81716 -37.84620 -35.65330 -34.98111 -34.16715 -32.86146 -30.51027 -29.72421 -28.29424 -27.58054 -26.87541 -25.66643 -24.78426 -23.16310 -21.50640 -20.82306 -19.88041 -19.23970 -18.63131 -18.52838 -17.51529 -17.33740 -16.99467 -16.87118 -16.22414 -16.03886 -15.58030 -15.20477 -14.89802 -14.78549 -14.72177 -14.51245 -14.37627 -13.99624 -13.97870 -13.82936 -13.61184 -13.39708 -13.30717 -13.09485 -12.88943 -12.84434 -12.77816 -12.56968 -12.40731 -12.22041 -12.11207 -12.08377 -11.89079 -11.82666 -11.65647 -11.57085 -11.22207 -10.74335 -10.63836 -10.42466 -9.45205 -8.88740 -8.21854 -6.37589 -0.15360 0.33656 0.77517 1.08421 1.38148 1.42284 1.49625 1.65126 1.71610 2.27970 2.44528 3.08058 3.43886 3.59679 3.62973 3.76640 3.84856 3.97302 4.10917 4.17912 4.20090 4.27300 4.39442 4.48916 4.55417 4.65887 4.66836 4.68641 4.72446 4.86020 4.88667 4.92737 4.96292 4.99222 5.01974 5.09432 5.14395 5.20650 5.22704 5.33309 5.43341 5.44364 5.56351 5.74112 5.82134 6.04991 6.21770 6.66374 6.74473 7.25039 7.40328 8.85402 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012028 B = 0.003334 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.310619 B = 8396.429621 C = 9549.564686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.193 4.193 3 S 0.007 5.993 4 C 0.460 3.540 5 O -0.521 6.521 6 N -0.526 5.526 7 C 0.125 3.875 8 C -0.147 4.147 9 C 0.509 3.491 10 O -0.595 6.595 11 N -0.596 5.596 12 C 0.264 3.736 13 C -0.542 4.542 14 H 0.061 0.939 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.970 3.030 18 H -0.258 1.258 19 H -0.283 1.283 20 H -0.273 1.273 21 C 0.111 3.889 22 C -0.113 4.113 23 C -0.134 4.134 24 C -0.141 4.141 25 C 0.082 3.918 26 C -0.103 4.103 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.123 0.877 34 H 0.018 0.982 35 H -0.005 1.005 36 H 0.266 0.734 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.023 0.977 45 H 0.066 0.934 46 H 0.096 0.904 47 H 0.120 0.880 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.539 15.603 -1.426 25.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.313 4.313 3 S 0.250 5.750 4 C 0.144 3.856 5 O -0.405 6.405 6 N -0.246 5.246 7 C -0.001 4.001 8 C -0.187 4.187 9 C 0.297 3.703 10 O -0.476 6.476 11 N -0.325 5.325 12 C 0.143 3.857 13 C -0.581 4.581 14 H 0.079 0.921 15 C -0.192 4.192 16 N -0.571 5.571 17 Si 0.793 3.207 18 H -0.183 1.183 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.012 4.012 22 C -0.133 4.133 23 C -0.192 4.192 24 C -0.198 4.198 25 C -0.027 4.027 26 C -0.162 4.162 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.141 0.859 34 H 0.036 0.964 35 H 0.013 0.987 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.119 0.881 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.042 0.958 45 H 0.085 0.915 46 H 0.114 0.886 47 H 0.139 0.861 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.604 16.867 -0.915 25.878 hybrid contribution 1.234 -2.300 0.297 2.627 sum -18.370 14.567 -0.618 23.453 Atomic orbital electron populations 1.20322 0.82797 1.04794 1.04151 1.24042 1.00946 0.90112 1.16164 1.84979 0.97159 1.12116 1.80705 1.21997 0.94883 0.85678 0.83080 1.90944 1.21202 1.72929 1.55396 1.46107 1.07202 1.06980 1.64276 1.21402 0.92229 0.89515 0.96926 1.22133 0.99919 0.97909 0.98756 1.20737 0.82851 0.83362 0.83313 1.90653 1.57859 1.66141 1.32980 1.48133 1.47938 1.30115 1.06321 1.18685 0.89054 0.82573 0.95399 1.21682 0.93577 0.91570 1.51262 0.92107 1.25907 0.96099 1.02855 0.94381 1.70069 1.09743 1.26318 1.50927 0.85438 0.78377 0.77659 0.79180 1.18263 1.20825 1.19851 1.21866 0.97335 0.97377 0.84591 1.21513 0.98909 0.95870 0.96994 1.21702 1.02225 1.01612 0.93640 1.21901 1.02068 0.97497 0.98383 1.19785 0.80794 0.99879 1.02201 1.20957 1.03116 0.87047 1.05064 0.89357 0.90068 0.87922 0.87308 0.90745 0.87491 0.85897 0.96430 0.98727 0.92479 0.90512 0.88115 0.93280 0.90819 0.91741 0.92167 0.91369 0.95819 0.91468 0.88599 0.86126 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.10 71.24 0.72 0.33 16 2 C -0.19 -2.82 6.72 24.54 0.16 -2.65 16 3 S 0.01 0.14 22.97 -56.49 -1.30 -1.16 16 4 C 0.46 13.18 8.27 129.87 1.07 14.25 16 5 O -0.52 -19.09 17.55 -4.75 -0.08 -19.17 16 6 N -0.53 -12.84 2.60 -643.43 -1.68 -14.51 16 7 C 0.12 3.57 4.29 86.38 0.37 3.94 16 8 C -0.15 -4.23 4.28 29.85 0.13 -4.10 16 9 C 0.51 20.86 6.45 87.66 0.57 21.43 16 10 O -0.59 -30.28 15.54 -3.02 -0.05 -30.33 16 11 N -0.60 -24.93 2.26 -826.16 -1.87 -26.80 16 12 C 0.26 14.23 5.22 85.64 0.45 14.68 16 13 C -0.54 -30.47 9.39 25.60 0.24 -30.23 16 14 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 15 C 0.01 0.37 5.46 84.65 0.46 0.83 16 16 N -0.93 -56.28 13.29 21.45 0.28 -56.00 16 17 Si 0.97 43.63 29.54 68.60 2.03 45.65 16 18 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 C 0.11 3.41 4.89 86.38 0.42 3.83 16 22 C -0.11 -3.17 3.11 -10.79 -0.03 -3.20 16 23 C -0.13 -2.72 9.19 71.98 0.66 -2.06 16 24 C -0.14 -3.89 7.59 71.98 0.55 -3.34 16 25 C 0.08 1.41 6.59 40.71 0.27 1.68 16 26 C -0.10 -1.19 9.07 71.23 0.65 -0.55 16 27 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.10 0.25 6.77 -2.39 -0.02 0.23 16 30 H 0.11 2.92 6.83 -2.39 -0.02 2.90 16 31 H 0.07 2.58 7.69 -2.39 -0.02 2.57 16 32 H 0.11 3.02 4.79 -2.39 -0.01 3.01 16 33 H 0.12 2.76 6.74 -2.39 -0.02 2.74 16 34 H 0.02 0.98 7.94 -2.39 -0.02 0.96 16 35 H -0.01 -0.34 7.35 -2.39 -0.02 -0.36 16 36 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.08 2.45 8.12 -2.39 -0.02 2.43 16 38 H 0.10 2.38 6.10 -2.39 -0.01 2.37 16 39 H 0.05 1.66 8.01 -2.39 -0.02 1.64 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.06 1.20 8.14 -2.38 -0.02 1.19 16 43 H 0.07 1.63 6.49 -2.39 -0.02 1.62 16 44 H 0.02 0.79 6.87 -2.39 -0.02 0.77 16 45 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.12 0.66 6.69 -2.39 -0.02 0.64 16 48 H 0.07 1.01 6.22 -2.39 -0.01 0.99 16 Total: -1.00 -78.65 395.39 4.98 -73.67 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.96 Total: 13.82 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 6.68 Total: 14.83 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -3.26 Total: -97.31 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -0.13 Total: -49.50 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -1.30 Total: -1.16 kcal Total: -78.65 4.98 -73.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734427299.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.490 kcal (2) G-P(sol) polarization free energy of solvation -78.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds