Wall clock time and date at job start Sat Apr 11 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46827 * 64.19368 * 3 2 1 5 5 C 1.37103 * 119.99822 * 96.38609 * 4 3 2 6 6 H 1.07996 * 120.00045 * 157.97876 * 5 4 3 7 7 C 1.38951 * 119.99785 * 337.97778 * 5 4 3 8 8 N 1.31407 * 120.00301 * 353.30972 * 7 5 4 9 9 Si 1.86801 * 119.99751 * 173.30523 * 7 5 4 10 10 H 1.48498 * 109.47158 * 179.97438 * 9 7 5 11 11 H 1.48492 * 109.47591 * 300.00326 * 9 7 5 12 12 H 1.48511 * 109.46938 * 60.00109 * 9 7 5 13 13 C 1.34774 * 120.00221 * 276.38331 * 4 3 2 14 14 O 1.21285 * 120.00135 * 184.80752 * 13 4 3 15 15 C 1.50699 * 119.99685 * 4.79768 * 13 4 3 16 16 H 1.09000 * 110.85709 * 37.60845 * 15 13 4 17 17 C 1.54638 * 110.96674 * 161.43740 * 15 13 4 18 18 C 1.51279 * 104.19352 * 93.32454 * 17 15 13 19 19 O 1.21286 * 124.94138 * 196.21975 * 18 17 15 20 20 N 1.34418 * 110.11995 * 16.25079 * 18 17 15 21 21 C 1.39918 * 124.35132 * 180.42710 * 20 18 17 22 22 C 1.38875 * 120.07318 * 4.53848 * 21 20 18 23 23 C 1.38108 * 119.93258 * 179.72146 * 22 21 20 24 24 C 1.38286 * 120.06695 * 0.56983 * 23 22 21 25 25 C 1.50702 * 119.92544 * 179.70243 * 24 23 22 26 26 C 1.52997 * 109.46921 * 269.97574 * 25 24 23 27 27 C 1.38275 * 120.14314 * 359.68009 * 24 23 22 28 28 C 1.38117 * 120.07051 * 0.04441 * 27 24 23 29 29 C 1.46771 * 111.29876 * 0.40739 * 20 18 17 30 30 H 4.40645 * 5.51391 * 180.02562 * 4 1 2 31 31 H 1.08999 * 109.47283 * 304.19254 * 3 2 1 32 32 H 1.08996 * 109.46555 * 184.19476 * 3 2 1 33 33 H 0.97001 * 120.00500 * 180.02562 * 8 7 5 34 34 H 1.09001 * 110.48207 * 212.00581 * 17 15 13 35 35 H 1.08999 * 110.48602 * 334.64400 * 17 15 13 36 36 H 1.08002 * 120.02924 * 359.97371 * 22 21 20 37 37 H 1.07995 * 119.96678 * 180.25498 * 23 22 21 38 38 H 1.08998 * 109.47252 * 29.98305 * 25 24 23 39 39 H 1.08998 * 109.46870 * 149.97956 * 25 24 23 40 40 H 1.08994 * 109.47561 * 299.99952 * 26 25 24 41 41 H 1.08998 * 109.47036 * 60.00484 * 26 25 24 42 42 H 1.09004 * 109.47027 * 179.97438 * 26 25 24 43 43 H 1.08006 * 119.96859 * 180.02562 * 27 24 23 44 44 H 1.08000 * 120.03416 * 179.97438 * 28 27 24 45 45 H 1.08994 * 110.24740 * 223.97860 * 29 20 18 46 46 H 1.09002 * 110.31812 * 102.01931 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.6004 -1.2435 5 6 3.4872 0.1999 -2.2994 6 1 4.1598 -0.1723 -3.0580 7 6 2.9792 1.4898 -2.3935 8 7 2.0614 1.8979 -1.5462 9 14 3.6011 2.6437 -3.7243 10 1 2.9054 3.9507 -3.6109 11 1 5.0633 2.8450 -3.5613 12 1 3.3286 2.0525 -5.0591 13 6 3.2375 -1.9400 -1.3495 14 8 3.7231 -2.4341 -2.3450 15 6 2.7492 -2.8240 -0.2309 16 1 1.8388 -2.4212 0.2129 17 6 2.5305 -4.2727 -0.7258 18 6 3.8377 -4.9702 -0.4206 19 8 4.1865 -6.0307 -0.8949 20 7 4.5563 -4.2442 0.4531 21 6 5.8189 -4.6094 0.9329 22 6 6.4509 -5.7421 0.4368 23 6 7.6997 -6.0967 0.9082 24 6 8.3156 -5.3318 1.8818 25 6 9.6753 -5.7254 2.3987 26 6 9.5135 -6.6611 3.5984 27 6 7.6867 -4.2063 2.3815 28 6 6.4403 -3.8431 1.9101 29 6 3.8464 -3.0189 0.8389 30 1 -1.0499 0.0001 -0.0002 31 1 3.0097 -0.5767 0.8500 32 1 3.0088 1.0257 0.0752 33 1 1.7064 2.7982 -1.6121 34 1 1.7113 -4.7422 -0.1812 35 1 2.3332 -4.2839 -1.7977 36 1 5.9681 -6.3428 -0.3199 37 1 8.1935 -6.9752 0.5198 38 1 10.2294 -6.2364 1.6114 39 1 10.2199 -4.8324 2.7053 40 1 8.9595 -6.1500 4.3857 41 1 8.9689 -7.5541 3.2918 42 1 10.4970 -6.9462 3.9720 43 1 8.1705 -3.6106 3.1416 44 1 5.9495 -2.9642 2.3012 45 1 4.5303 -2.1702 0.8368 46 1 3.3956 -3.1369 1.8243 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798805373.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:49 Heat of formation + Delta-G solvation = 11.866104 kcal Electronic energy + Delta-G solvation = -29401.083846 eV Core-core repulsion = 25450.111965 eV Total energy + Delta-G solvation = -3950.971881 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.40147 -40.54483 -39.71184 -37.68544 -37.08422 -35.36018 -33.99548 -33.00355 -32.87873 -31.92553 -29.44451 -28.98131 -28.12871 -26.80289 -25.01672 -24.45653 -23.14303 -22.20140 -20.83786 -20.57980 -19.65413 -18.85100 -18.69677 -18.08016 -17.17129 -17.05868 -16.48123 -16.24161 -16.15498 -15.93443 -15.72480 -15.21258 -14.84618 -14.70164 -14.64985 -14.48015 -14.31565 -14.18906 -14.05178 -13.99957 -13.72007 -13.36910 -13.15184 -12.86336 -12.83166 -12.68445 -12.61193 -12.46650 -12.30505 -12.16782 -11.88620 -11.68393 -11.28104 -11.16852 -10.97999 -10.72978 -10.55836 -10.34403 -9.91534 -9.80049 -8.81871 -8.28298 -5.98857 0.24334 0.43784 1.35872 1.41521 1.45907 1.49446 1.76823 1.85522 2.12090 2.33472 2.43818 2.84696 3.00974 3.06977 3.14678 3.39186 3.69601 3.85762 3.91884 3.93048 4.01130 4.08296 4.25910 4.31342 4.43935 4.46234 4.49884 4.56541 4.60463 4.62410 4.71261 4.74614 4.81782 4.83919 5.08428 5.11144 5.13226 5.13978 5.27663 5.37651 5.44327 5.45535 5.52246 5.57305 5.72813 5.99630 6.06484 6.11502 6.44695 6.91046 7.13429 7.20287 7.40116 7.94455 8.66532 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014095 B = 0.003017 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.067976 B = 9277.705407 C = 9889.716655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.150 4.150 3 C 0.231 3.769 4 N -0.446 5.446 5 C -0.345 4.345 6 H 0.069 0.931 7 C 0.007 3.993 8 N -0.875 5.875 9 Si 0.981 3.019 10 H -0.270 1.270 11 H -0.270 1.270 12 H -0.285 1.285 13 C 0.448 3.552 14 O -0.626 6.626 15 C -0.106 4.106 16 H 0.142 0.858 17 C -0.127 4.127 18 C 0.519 3.481 19 O -0.553 6.553 20 N -0.557 5.557 21 C 0.141 3.859 22 C -0.183 4.183 23 C -0.097 4.097 24 C -0.112 4.112 25 C -0.079 4.079 26 C -0.144 4.144 27 C -0.089 4.089 28 C -0.156 4.156 29 C 0.110 3.890 30 H 0.231 0.769 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.272 0.728 34 H 0.153 0.847 35 H 0.091 0.909 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.155 0.845 44 H 0.147 0.853 45 H 0.088 0.912 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.783 -7.648 15.707 18.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.152 4.152 3 C 0.109 3.891 4 N -0.164 5.164 5 C -0.473 4.473 6 H 0.087 0.913 7 C -0.196 4.196 8 N -0.513 5.513 9 Si 0.806 3.194 10 H -0.194 1.194 11 H -0.195 1.195 12 H -0.211 1.211 13 C 0.238 3.762 14 O -0.513 6.513 15 C -0.128 4.128 16 H 0.159 0.841 17 C -0.167 4.167 18 C 0.310 3.690 19 O -0.432 6.432 20 N -0.279 5.279 21 C 0.048 3.952 22 C -0.203 4.203 23 C -0.115 4.115 24 C -0.113 4.113 25 C -0.116 4.116 26 C -0.201 4.201 27 C -0.107 4.107 28 C -0.176 4.176 29 C -0.011 4.011 30 H 0.247 0.753 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.170 0.830 35 H 0.110 0.890 36 H 0.144 0.856 37 H 0.153 0.847 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.173 0.827 44 H 0.164 0.836 45 H 0.107 0.893 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.098 -8.191 15.014 18.157 hybrid contribution -0.247 0.783 -1.551 1.755 sum 5.851 -7.408 13.463 16.443 Atomic orbital electron populations 1.25137 0.96325 1.03559 1.01482 1.23387 0.94839 0.97896 0.99042 1.18502 0.84640 1.00779 0.85164 1.43787 1.55611 1.03934 1.13042 1.19487 1.27733 0.95720 1.04329 0.91347 1.25877 0.95176 0.98732 0.99789 1.70021 1.25524 1.19269 1.36440 0.85179 0.78650 0.77457 0.78131 1.19446 1.19459 1.21081 1.20617 0.83717 0.82973 0.88908 1.90538 1.50662 1.74609 1.35519 1.22244 1.01177 0.94510 0.94862 0.84053 1.22248 0.95936 0.93651 1.04897 1.21410 0.87330 0.83600 0.76687 1.90540 1.75003 1.23675 1.54024 1.45869 1.16159 1.23200 1.42689 1.18101 0.84776 0.96007 0.96310 1.21589 0.97366 0.98294 1.03084 1.21078 0.93611 0.99999 0.96813 1.20194 0.98159 0.95768 0.97196 1.20535 0.91755 1.00797 0.98508 1.21736 1.02323 0.98877 0.97169 1.21168 0.93656 0.96376 0.99506 1.21067 0.97372 1.01168 0.98028 1.22466 0.93619 0.85934 0.99104 0.75252 0.88395 0.87994 0.91728 0.82961 0.89050 0.85601 0.84717 0.90782 0.89739 0.92491 0.93404 0.91024 0.82725 0.83552 0.89335 0.84466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -8.49 19.25 74.32 1.43 -7.06 16 2 C -0.15 -5.76 10.30 31.13 0.32 -5.44 16 3 C 0.23 8.97 4.81 84.58 0.41 9.37 16 4 N -0.45 -21.10 2.60 -645.42 -1.68 -22.78 16 5 C -0.34 -18.63 9.35 84.04 0.79 -17.85 16 6 H 0.07 4.06 7.35 -2.91 -0.02 4.04 16 7 C 0.01 0.36 5.19 84.93 0.44 0.80 16 8 N -0.87 -42.60 8.92 21.66 0.19 -42.41 16 9 Si 0.98 41.33 29.56 68.60 2.03 43.35 16 10 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 11 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 C 0.45 20.45 6.68 87.66 0.59 21.04 16 14 O -0.63 -34.95 15.51 -3.05 -0.05 -34.99 16 15 C -0.11 -3.36 2.53 -10.48 -0.03 -3.39 16 16 H 0.14 3.77 6.42 -2.39 -0.02 3.75 16 17 C -0.13 -4.04 6.08 30.59 0.19 -3.85 16 18 C 0.52 19.16 7.90 87.90 0.69 19.85 16 19 O -0.55 -23.73 14.81 -3.05 -0.05 -23.78 16 20 N -0.56 -18.01 3.14 -627.69 -1.97 -19.98 16 21 C 0.14 4.46 6.60 38.15 0.25 4.71 16 22 C -0.18 -6.07 9.29 22.39 0.21 -5.86 16 23 C -0.10 -2.54 9.69 22.25 0.22 -2.32 16 24 C -0.11 -2.42 5.14 -19.84 -0.10 -2.53 16 25 C -0.08 -1.19 6.06 29.85 0.18 -1.01 16 26 C -0.14 -1.87 9.89 71.98 0.71 -1.16 16 27 C -0.09 -1.85 9.69 22.25 0.22 -1.63 16 28 C -0.16 -3.84 9.40 22.39 0.21 -3.62 16 29 C 0.11 2.86 5.04 86.83 0.44 3.30 16 30 H 0.23 6.03 7.80 -4.42 -0.03 6.00 16 31 H 0.10 2.84 6.16 -2.39 -0.01 2.83 16 32 H 0.10 4.38 6.26 -2.39 -0.01 4.36 16 33 H 0.27 12.72 8.31 -92.71 -0.77 11.95 16 34 H 0.15 3.38 8.14 -2.39 -0.02 3.36 16 35 H 0.09 3.45 7.36 -2.39 -0.02 3.43 16 36 H 0.13 4.86 5.24 -2.91 -0.02 4.85 16 37 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.07 1.06 8.08 -2.39 -0.02 1.04 16 39 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 40 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 44 H 0.15 2.87 6.99 -2.91 -0.02 2.85 16 45 H 0.09 2.35 7.01 -2.39 -0.02 2.33 16 46 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -74.74 380.63 6.63 -68.11 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 1.00 Total: 29.10 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 7.15 Total: 3.36 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -3.46 Total: -85.16 kcal Atomic # 8 Polarization: -58.68 SS G_CDS: -0.09 Total: -58.77 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Total: -74.74 6.63 -68.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798805373.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.977 kcal (2) G-P(sol) polarization free energy of solvation -74.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds