Wall clock time and date at job start Sat Apr 11 2020 06:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46966 * 2 1 4 4 C 1.53001 * 109.46759 * 240.00251 * 2 1 3 5 5 C 1.52995 * 109.46977 * 120.00663 * 2 1 3 6 6 N 1.46898 * 109.47465 * 89.71826 * 5 2 1 7 7 C 1.46893 * 111.00280 * 75.31939 * 6 5 2 8 8 C 1.50696 * 109.47287 * 83.60507 * 7 6 5 9 9 H 1.08004 * 119.99761 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00388 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00364 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99828 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47350 * 90.00005 * 12 10 8 14 14 H 1.48495 * 109.47394 * 210.00225 * 12 10 8 15 15 H 1.48507 * 109.47072 * 329.99809 * 12 10 8 16 16 C 1.46908 * 110.99397 * 311.36388 * 6 5 2 17 17 C 1.50700 * 109.47039 * 277.94531 * 16 6 5 18 18 C 1.38246 * 120.00368 * 258.60699 * 17 16 6 19 19 C 1.38217 * 120.00277 * 180.02562 * 18 17 16 20 20 C 1.38258 * 119.99915 * 359.95815 * 19 18 17 21 21 C 1.38218 * 119.99728 * 0.06939 * 20 19 18 22 22 S 1.76196 * 119.99751 * 179.97438 * 21 20 19 23 23 N 1.65603 * 107.21918 * 269.95309 * 22 21 20 24 24 O 1.42104 * 106.40250 * 23.49160 * 22 21 20 25 25 O 1.42098 * 106.40427 * 156.41640 * 22 21 20 26 26 C 1.38217 * 119.99428 * 78.59389 * 17 16 6 27 27 H 1.09000 * 109.46939 * 293.31162 * 1 2 3 28 28 H 1.09004 * 109.46712 * 53.31355 * 1 2 3 29 29 H 1.09003 * 109.47025 * 173.31090 * 1 2 3 30 30 H 1.09008 * 109.46410 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47208 * 299.99772 * 3 2 1 32 32 H 1.09002 * 109.46556 * 60.00461 * 3 2 1 33 33 H 1.09002 * 109.47506 * 277.16559 * 4 2 1 34 34 H 1.09007 * 109.47262 * 37.16818 * 4 2 1 35 35 H 1.09003 * 109.47316 * 157.16369 * 4 2 1 36 36 H 1.08997 * 109.47181 * 329.70895 * 5 2 1 37 37 H 1.09002 * 109.47091 * 209.71298 * 5 2 1 38 38 H 1.09002 * 109.47204 * 203.60149 * 7 6 5 39 39 H 1.09004 * 109.47021 * 323.59932 * 7 6 5 40 40 H 0.97001 * 120.00086 * 180.02562 * 11 10 8 41 41 H 1.08999 * 109.46499 * 157.95293 * 16 6 5 42 42 H 1.08996 * 109.46907 * 37.95423 * 16 6 5 43 43 H 1.08005 * 120.00137 * 359.97438 * 18 17 16 44 44 H 1.08001 * 120.00395 * 179.97438 * 19 18 17 45 45 H 1.07999 * 120.00015 * 179.97438 * 20 19 18 46 46 H 0.97004 * 119.99948 * 359.97438 * 23 22 21 47 47 H 0.96996 * 120.00606 * 179.97438 * 23 22 21 48 48 H 1.07996 * 120.00258 * 359.71485 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7214 1.2491 6 7 2.1968 -2.1527 0.9583 7 6 3.3940 -2.3962 0.1427 8 6 4.6035 -2.4787 1.0378 9 1 4.4938 -2.3615 2.1058 10 6 5.8502 -2.7027 0.4933 11 7 6.9057 -2.7752 1.2745 12 14 6.0399 -2.9046 -1.3541 13 1 6.2810 -1.5774 -1.9750 14 1 7.1896 -3.8004 -1.6386 15 1 4.8000 -3.4968 -1.9172 16 6 0.9963 -2.6918 0.3054 17 6 -0.0415 -3.0141 1.3496 18 6 -0.2302 -4.3219 1.7561 19 6 -1.1823 -4.6176 2.7133 20 6 -1.9455 -3.6053 3.2650 21 6 -1.7573 -2.2978 2.8581 22 16 -2.7304 -1.0078 3.5606 23 7 -4.0830 -0.8458 2.6190 24 8 -3.1754 -1.4833 4.8237 25 8 -1.9840 0.1907 3.4002 26 6 -0.8045 -2.0021 1.9009 27 1 -0.3633 0.4067 0.9438 28 1 -0.3633 0.6140 -0.8242 29 1 -0.3633 -1.0207 -0.1197 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9562 0.8901 33 1 2.0402 -1.7969 -1.0733 34 1 1.3890 -0.4912 -2.0928 35 1 3.0541 -0.3893 -1.4721 36 1 1.3245 -0.5917 2.0611 37 1 3.0026 -0.3028 1.5429 38 1 3.2791 -3.3344 -0.4002 39 1 3.5223 -1.5790 -0.5672 40 1 7.7828 -2.9324 0.8913 41 1 1.2560 -3.5986 -0.2407 42 1 0.5966 -1.9519 -0.3880 43 1 0.3659 -5.1128 1.3251 44 1 -1.3300 -5.6393 3.0306 45 1 -2.6898 -3.8363 4.0126 46 1 -4.2059 -1.4165 1.8443 47 1 -4.7524 -0.1802 2.8421 48 1 -0.6538 -0.9798 1.5869 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876691595.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:14 Heat of formation + Delta-G solvation = -9.365256 kcal Electronic energy + Delta-G solvation = -29409.714514 eV Core-core repulsion = 25593.265924 eV Total energy + Delta-G solvation = -3816.448590 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.79736 -39.69796 -38.21634 -36.90729 -35.67850 -34.55552 -34.03273 -33.02300 -32.32662 -29.87641 -29.04673 -28.32690 -27.29991 -25.29041 -24.21590 -22.88058 -21.85715 -20.44414 -19.98504 -19.11611 -18.72939 -18.31845 -17.54411 -17.20746 -16.85045 -16.65721 -16.47281 -16.22066 -15.63614 -15.53216 -15.44505 -14.87071 -14.56577 -14.43644 -14.27306 -13.91166 -13.39135 -13.22447 -13.21315 -13.17047 -13.11365 -13.07468 -12.92780 -12.81621 -12.62767 -12.46867 -12.23623 -12.09889 -11.99079 -11.93573 -11.71899 -11.55313 -11.47698 -11.33065 -11.20931 -11.05880 -10.68731 -10.32414 -9.83604 -8.71625 -8.23535 -6.24126 -0.59761 -0.16667 0.32184 1.34522 1.36616 1.46641 2.16715 2.36543 2.42986 2.77768 3.10190 3.39115 3.51011 3.83418 3.84183 3.88256 3.93938 4.02124 4.09053 4.22466 4.33751 4.44357 4.50257 4.54793 4.60870 4.68021 4.76172 4.79500 4.87820 4.93697 4.97639 5.00764 5.03394 5.06916 5.13510 5.21188 5.24609 5.29944 5.31842 5.38117 5.44893 5.47113 5.56690 5.67011 5.88413 6.05883 6.37554 6.44900 6.72679 6.81754 7.37606 8.94373 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015818 B = 0.003675 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.669750 B = 7616.627644 C = 8410.152020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.135 4.135 4 C -0.175 4.175 5 C 0.065 3.935 6 N -0.536 5.536 7 C 0.145 3.855 8 C -0.508 4.508 9 H 0.024 0.976 10 C 0.003 3.997 11 N -0.956 5.956 12 Si 0.944 3.056 13 H -0.266 1.266 14 H -0.287 1.287 15 H -0.240 1.240 16 C 0.049 3.951 17 C -0.094 4.094 18 C -0.057 4.057 19 C -0.139 4.139 20 C -0.031 4.031 21 C -0.678 4.678 22 S 2.722 3.278 23 N -1.231 6.231 24 O -0.997 6.997 25 O -0.996 6.996 26 C -0.052 4.052 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.025 0.975 39 H 0.042 0.958 40 H 0.264 0.736 41 H 0.078 0.922 42 H 0.104 0.896 43 H 0.137 0.863 44 H 0.159 0.841 45 H 0.157 0.843 46 H 0.430 0.570 47 H 0.430 0.570 48 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.873 1.645 -5.666 26.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.100 4.100 3 C -0.193 4.193 4 C -0.231 4.231 5 C -0.063 4.063 6 N -0.258 5.258 7 C 0.019 3.981 8 C -0.546 4.546 9 H 0.042 0.958 10 C -0.193 4.193 11 N -0.598 5.598 12 Si 0.767 3.233 13 H -0.191 1.191 14 H -0.213 1.213 15 H -0.164 1.164 16 C -0.077 4.077 17 C -0.096 4.096 18 C -0.076 4.076 19 C -0.157 4.157 20 C -0.051 4.051 21 C -0.767 4.767 22 S 2.812 3.188 23 N -0.912 5.912 24 O -0.986 6.986 25 O -0.985 6.985 26 C -0.071 4.071 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.043 0.957 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.121 0.879 43 H 0.155 0.845 44 H 0.176 0.824 45 H 0.175 0.825 46 H 0.260 0.740 47 H 0.263 0.737 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -25.256 1.845 -4.340 25.692 hybrid contribution 1.041 -0.306 -1.425 1.791 sum -24.215 1.539 -5.765 24.939 Atomic orbital electron populations 1.22817 0.93464 1.03245 1.02945 1.21129 0.96834 0.96494 0.95563 1.21848 1.00158 0.94840 1.02454 1.22916 1.00518 1.02129 0.97548 1.22301 1.00131 0.87176 0.96704 1.61904 1.01943 1.14919 1.47032 1.20817 0.87580 0.96741 0.92933 1.21419 0.91834 1.47209 0.94187 0.95804 1.25852 0.95240 0.94958 1.03220 1.70083 0.99626 1.52477 1.37604 0.85770 0.78864 0.78905 0.79779 1.19140 1.21305 1.16364 1.22061 0.89704 1.01566 0.94369 1.20117 0.96449 0.93884 0.99142 1.21708 0.94980 0.96449 0.94449 1.21583 0.96134 1.00988 0.97010 1.21208 0.97513 0.90588 0.95777 1.30430 1.17283 1.14333 1.14637 1.00625 0.72970 0.72602 0.72600 1.52612 1.40190 1.52555 1.45796 1.93558 1.81594 1.81767 1.41648 1.93572 1.72279 1.46461 1.86191 1.21859 0.91540 1.01700 0.91972 0.91430 0.90177 0.89970 0.94209 0.90891 0.92328 0.90462 0.90657 0.93529 0.91622 0.93410 0.95694 0.94116 0.92755 0.90409 0.87904 0.84523 0.82368 0.82498 0.73988 0.73731 0.82156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.75 6.36 71.98 0.46 -3.29 16 2 C -0.10 -2.81 0.77 -52.18 -0.04 -2.85 16 3 C -0.14 -3.65 8.19 71.98 0.59 -3.06 16 4 C -0.17 -5.02 6.20 71.98 0.45 -4.58 16 5 C 0.07 2.43 4.85 86.30 0.42 2.85 16 6 N -0.54 -21.21 4.46 -905.39 -4.04 -25.25 16 7 C 0.15 6.59 2.46 85.56 0.21 6.80 16 8 C -0.51 -29.55 9.51 25.60 0.24 -29.31 16 9 H 0.02 1.59 8.06 -2.91 -0.02 1.57 16 10 C 0.00 0.19 5.47 84.65 0.46 0.65 16 11 N -0.96 -60.94 13.96 21.45 0.30 -60.64 16 12 Si 0.94 43.30 27.47 68.60 1.88 45.18 16 13 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 14 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 15 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16 16 C 0.05 1.47 3.70 85.56 0.32 1.79 16 17 C -0.09 -2.58 5.31 -19.87 -0.11 -2.69 16 18 C -0.06 -1.40 9.67 22.27 0.22 -1.18 16 19 C -0.14 -2.79 10.05 22.27 0.22 -2.57 16 20 C -0.03 -0.64 9.52 22.27 0.21 -0.43 16 21 C -0.68 -15.18 5.94 22.27 0.13 -15.05 16 22 S 2.72 55.79 6.28 -56.49 -0.35 55.44 16 23 N -1.23 -12.15 9.55 37.02 0.35 -11.80 16 24 O -1.00 -26.09 17.28 -128.00 -2.21 -28.30 16 25 O -1.00 -27.50 17.28 -128.00 -2.21 -29.71 16 26 C -0.05 -1.32 7.17 22.27 0.16 -1.17 16 27 H 0.07 1.57 6.44 -2.39 -0.02 1.56 16 28 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.08 1.70 3.55 -2.39 -0.01 1.70 16 30 H 0.04 1.21 8.09 -2.38 -0.02 1.19 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 2.39 2.69 -2.39 -0.01 2.39 16 34 H 0.07 1.68 7.94 -2.38 -0.02 1.66 16 35 H 0.05 1.51 6.76 -2.39 -0.02 1.49 16 36 H 0.07 2.38 6.17 -2.39 -0.01 2.37 16 37 H 0.05 2.10 7.37 -2.39 -0.02 2.08 16 38 H 0.03 1.12 6.43 -2.39 -0.02 1.10 16 39 H 0.04 1.78 3.29 -2.39 -0.01 1.77 16 40 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 41 H 0.08 2.26 7.23 -2.39 -0.02 2.25 16 42 H 0.10 2.63 2.35 -2.39 -0.01 2.63 16 43 H 0.14 3.08 8.03 -2.91 -0.02 3.05 16 44 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 45 H 0.16 2.49 7.62 -2.91 -0.02 2.47 16 46 H 0.43 2.05 8.92 -96.74 -0.86 1.19 16 47 H 0.43 2.63 8.96 -96.74 -0.87 1.76 16 48 H 0.16 4.02 2.26 -2.91 -0.01 4.02 16 Total: -1.00 -80.89 365.16 -3.09 -83.98 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: -0.76 Total: 25.18 kcal Atomic # 6 Polarization: -58.02 SS G_CDS: 3.94 Total: -54.07 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -3.39 Total: -97.69 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -4.42 Total: -58.02 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.88 Total: 45.18 kcal Atomic # 16 Polarization: 55.79 SS G_CDS: -0.35 Total: 55.44 kcal Total: -80.89 -3.09 -83.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876691595.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.619 kcal (2) G-P(sol) polarization free energy of solvation -80.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds