Wall clock time and date at job start Sat Apr 11 2020 06:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47071 * 2 1 4 4 N 1.46894 * 109.47154 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46831 * 300.00215 * 3 2 1 6 6 C 1.53000 * 109.47180 * 299.99705 * 5 3 2 7 7 C 1.53000 * 109.46998 * 60.00032 * 3 2 1 8 8 N 1.46503 * 109.47132 * 64.99632 * 7 3 2 9 9 S 1.65597 * 119.99916 * 164.99803 * 8 7 3 10 10 O 1.42100 * 106.40221 * 311.46434 * 9 8 7 11 11 O 1.42100 * 106.40331 * 178.54440 * 9 8 7 12 12 C 1.76198 * 107.21897 * 65.00477 * 9 8 7 13 13 C 1.38233 * 120.00076 * 90.00038 * 12 9 8 14 14 C 1.38237 * 120.00111 * 179.97438 * 13 12 9 15 15 C 1.38231 * 119.99929 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99766 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47151 * 90.00279 * 16 15 14 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99694 * 180.27762 * 17 16 15 20 20 N 1.31523 * 119.99908 * 179.72112 * 19 17 16 21 21 Si 1.86800 * 120.00405 * 359.71709 * 19 17 16 22 22 H 1.48500 * 109.47210 * 90.00069 * 21 19 17 23 23 H 1.48504 * 109.47424 * 210.00300 * 21 19 17 24 24 H 1.48502 * 109.46888 * 330.00390 * 21 19 17 25 25 C 1.38233 * 120.00119 * 0.25187 * 15 14 13 26 26 C 1.38231 * 119.99963 * 269.97887 * 12 9 8 27 27 H 1.08997 * 109.46955 * 299.99489 * 1 2 3 28 28 H 1.08991 * 109.47208 * 60.00097 * 1 2 3 29 29 H 1.09000 * 109.46866 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46989 * 239.99955 * 2 1 3 31 31 H 1.08999 * 109.47099 * 120.00195 * 2 1 3 32 32 H 1.00897 * 111.00096 * 56.04022 * 4 3 2 33 33 H 1.00896 * 111.00253 * 180.02562 * 4 3 2 34 34 H 1.08997 * 109.46929 * 60.00071 * 5 3 2 35 35 H 1.09000 * 109.46755 * 179.97438 * 5 3 2 36 36 H 1.08997 * 109.46574 * 180.02562 * 6 5 3 37 37 H 1.09000 * 109.46772 * 300.00593 * 6 5 3 38 38 H 1.08999 * 109.46769 * 60.00430 * 6 5 3 39 39 H 1.09002 * 109.47144 * 305.00416 * 7 3 2 40 40 H 1.08995 * 109.47238 * 184.99823 * 7 3 2 41 41 H 0.96993 * 120.00102 * 345.00526 * 8 7 3 42 42 H 1.08000 * 120.00181 * 359.97438 * 13 12 9 43 43 H 1.08003 * 119.99517 * 179.97438 * 14 13 12 44 44 H 1.09000 * 109.47088 * 329.99418 * 16 15 14 45 45 H 1.09007 * 109.46560 * 209.99923 * 16 15 14 46 46 H 0.96995 * 120.00181 * 179.97438 * 20 19 17 47 47 H 1.08002 * 120.00409 * 179.72430 * 25 15 14 48 48 H 1.08004 * 120.00378 * 359.97438 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 1.5299 2.1637 -1.2493 6 6 2.0400 1.4425 -2.4985 7 6 1.5300 2.1638 1.2493 8 7 2.1141 1.5461 2.4424 9 16 2.0459 2.3311 3.8989 10 8 2.4852 3.6611 3.6588 11 8 2.6589 1.4696 4.8482 12 6 0.3469 2.4425 4.3523 13 6 -0.2364 1.4366 5.0998 14 6 -1.5692 1.5243 5.4560 15 6 -2.3188 2.6176 5.0642 16 6 -3.7720 2.7128 5.4520 17 6 -3.8931 3.4220 6.7762 18 1 -3.0064 3.7686 7.2861 19 6 -5.1353 3.6227 7.3396 20 7 -5.2406 4.2367 8.4979 21 14 -6.6689 3.0226 6.4578 22 1 -6.9741 1.6336 6.8853 23 1 -7.8126 3.9073 6.7961 24 1 -6.4390 3.0498 4.9910 25 6 -1.7371 3.6207 4.3118 26 6 -0.4026 3.5360 3.9608 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8702 0.9165 -0.7821 33 1 3.8706 2.3845 -0.0002 34 1 0.4400 2.1637 -1.2492 35 1 1.8929 3.1915 -1.2490 36 1 1.6769 1.9566 -3.3884 37 1 3.1300 1.4426 -2.4984 38 1 1.6766 0.4149 -2.4985 39 1 0.4437 2.0868 1.2952 40 1 1.8184 3.2140 1.2057 41 1 2.5409 0.6774 2.3793 42 1 0.3492 0.5822 5.4056 43 1 -2.0249 0.7381 6.0397 44 1 -4.1919 1.7105 5.5367 45 1 -4.3155 3.2712 4.6897 46 1 -6.1146 4.3782 8.8941 47 1 -2.3239 4.4728 4.0018 48 1 0.0532 4.3224 3.3774 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886883764.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:21 Heat of formation + Delta-G solvation = -68.290712 kcal Electronic energy + Delta-G solvation = -28034.005205 eV Core-core repulsion = 24215.001416 eV Total energy + Delta-G solvation = -3819.003790 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.43292 -38.86901 -37.06246 -35.69406 -34.34224 -33.67134 -32.02436 -31.73169 -30.98207 -30.62703 -27.95782 -27.52693 -24.31793 -23.49406 -23.48518 -22.39661 -20.72515 -19.45452 -19.04619 -17.82928 -17.29281 -16.91245 -16.45301 -16.37257 -15.43550 -15.37849 -15.14608 -15.03269 -14.55370 -14.31929 -14.26828 -13.85654 -13.50535 -13.16388 -13.07917 -12.83764 -12.77455 -12.60242 -12.47735 -12.35872 -11.98246 -11.90237 -11.87278 -11.84519 -11.76571 -11.64433 -11.26607 -11.07521 -10.94023 -10.90952 -10.70491 -10.52488 -10.24091 -10.09448 -9.56723 -9.46657 -9.03818 -8.70599 -8.62358 -8.43628 -6.18667 -4.20192 0.56456 1.28631 1.74458 3.14450 3.19694 3.28140 3.28794 3.80749 4.03748 4.13941 4.21442 4.30193 4.44282 4.46216 4.60122 4.76121 4.93899 5.03531 5.09195 5.17457 5.19150 5.20828 5.23541 5.26607 5.35212 5.42470 5.51547 5.58430 5.67352 5.72385 5.75237 5.77544 5.83376 5.84759 5.93765 6.07685 6.17401 6.25897 6.46050 6.70161 6.71847 6.79827 6.81017 7.01127 7.11206 7.30395 7.30722 7.53642 8.34559 8.85188 9.39535 10.93894 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015048 B = 0.002893 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.306408 B = 9677.382033 C =10754.998789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.113 4.113 3 C 0.115 3.885 4 N -0.836 5.836 5 C -0.157 4.157 6 C -0.155 4.155 7 C 0.128 3.872 8 N -1.104 6.104 9 S 2.699 3.301 10 O -0.966 6.966 11 O -0.966 6.966 12 C -0.701 4.701 13 C -0.020 4.020 14 C -0.143 4.143 15 C 0.030 3.970 16 C 0.006 3.994 17 C -0.520 4.520 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.894 5.894 21 Si 0.879 3.121 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.265 1.265 25 C -0.143 4.143 26 C -0.025 4.025 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.341 0.659 33 H 0.344 0.656 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.420 0.580 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.029 0.971 45 H 0.033 0.967 46 H 0.266 0.734 47 H 0.129 0.871 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.050 -7.943 -22.603 27.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.151 4.151 3 C 0.021 3.979 4 N -0.367 5.367 5 C -0.197 4.197 6 C -0.212 4.212 7 C 0.001 3.999 8 N -0.865 5.865 9 S 2.791 3.209 10 O -0.956 6.956 11 O -0.957 6.957 12 C -0.790 4.790 13 C -0.040 4.040 14 C -0.162 4.162 15 C 0.030 3.970 16 C -0.031 4.031 17 C -0.557 4.557 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.532 5.532 21 Si 0.706 3.294 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.190 1.190 25 C -0.162 4.162 26 C -0.044 4.044 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.256 0.744 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.047 0.953 45 H 0.051 0.949 46 H 0.076 0.924 47 H 0.147 0.853 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 14.506 -7.752 -21.264 26.883 hybrid contribution -1.644 -0.127 -1.230 2.057 sum 12.862 -7.879 -22.493 27.083 Atomic orbital electron populations 1.21941 0.95235 1.02154 1.02492 1.21547 0.96084 0.94832 1.02613 1.20969 0.88312 0.95779 0.92843 1.58796 1.06007 1.20564 1.51308 1.22350 1.02555 0.99718 0.95124 1.21824 1.00866 1.01066 0.97449 1.21361 0.97679 0.96942 0.83960 1.55288 1.73416 1.34786 1.23004 1.01522 0.73932 0.73282 0.72136 1.93548 1.79893 1.37159 1.85014 1.93566 1.75145 1.67347 1.59613 1.30455 1.25572 1.05137 1.17841 1.20770 0.94978 0.95832 0.92382 1.21219 0.93823 0.99573 1.01622 1.20681 0.97961 0.90818 0.87557 1.18979 0.87752 0.98059 0.98280 1.20825 0.94815 1.37717 1.02386 0.90664 1.24989 0.98904 0.94501 0.94652 1.69891 1.24618 1.41698 1.17004 0.86789 0.82879 0.79079 0.80662 1.20042 1.21080 1.18950 1.21207 0.94770 0.99633 1.00605 1.20774 0.93880 0.94454 0.95296 0.91732 0.92399 0.92489 0.91644 0.90997 0.84488 0.84234 0.90586 0.91605 0.92516 0.92916 0.92038 0.90813 0.90580 0.74381 0.85126 0.85311 0.95286 0.94855 0.92374 0.85329 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.22 37.16 0.34 -0.74 16 2 C -0.11 -0.71 4.77 -26.73 -0.13 -0.84 16 3 C 0.12 0.74 0.43 -131.60 -0.06 0.68 16 4 N -0.84 -5.11 8.42 0.74 0.01 -5.10 16 5 C -0.16 -0.87 4.79 -26.73 -0.13 -1.00 16 6 C -0.15 -0.72 9.22 37.16 0.34 -0.37 16 7 C 0.13 1.08 5.06 -4.04 -0.02 1.06 16 8 N -1.10 -10.87 5.62 -10.61 -0.06 -10.93 16 9 S 2.70 37.24 5.74 -107.50 -0.62 36.62 16 10 O -0.97 -15.58 16.75 -57.17 -0.96 -16.54 16 11 O -0.97 -15.91 17.28 -57.17 -0.99 -16.89 16 12 C -0.70 -10.78 5.95 -39.59 -0.24 -11.01 16 13 C -0.02 -0.32 9.52 -39.58 -0.38 -0.70 16 14 C -0.14 -2.58 9.70 -39.58 -0.38 -2.97 16 15 C 0.03 0.60 5.07 -104.62 -0.53 0.07 16 16 C 0.01 0.14 4.17 -29.03 -0.12 0.02 16 17 C -0.52 -14.28 9.65 -34.44 -0.33 -14.62 16 18 H 0.08 2.29 7.98 -52.49 -0.42 1.87 16 19 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 20 N -0.89 -26.84 13.96 55.43 0.77 -26.06 16 21 Si 0.88 20.58 27.46 -169.99 -4.67 15.91 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.26 -5.87 6.55 56.52 0.37 -5.50 16 25 C -0.14 -2.55 9.70 -39.58 -0.38 -2.93 16 26 C -0.02 -0.39 9.52 -39.58 -0.38 -0.76 16 27 H 0.06 0.50 6.32 -51.93 -0.33 0.17 16 28 H 0.06 0.35 6.43 -51.93 -0.33 0.02 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 31 H 0.07 0.50 6.90 -51.93 -0.36 0.14 16 32 H 0.34 1.63 7.31 -39.29 -0.29 1.34 16 33 H 0.34 2.06 9.00 -39.29 -0.35 1.71 16 34 H 0.08 0.43 6.43 -51.93 -0.33 0.10 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.05 0.21 6.76 -51.93 -0.35 -0.14 16 38 H 0.06 0.29 6.43 -51.93 -0.33 -0.05 16 39 H 0.07 0.59 6.17 -51.93 -0.32 0.27 16 40 H 0.08 0.66 7.75 -51.93 -0.40 0.26 16 41 H 0.42 3.68 7.33 -34.46 -0.25 3.43 16 42 H 0.13 1.82 7.62 -52.49 -0.40 1.42 16 43 H 0.13 2.18 8.06 -52.48 -0.42 1.76 16 44 H 0.03 0.63 7.51 -51.93 -0.39 0.24 16 45 H 0.03 0.73 7.15 -51.93 -0.37 0.36 16 46 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.13 2.14 8.06 -52.49 -0.42 1.72 16 48 H 0.13 1.74 7.62 -52.48 -0.40 1.34 16 LS Contribution 388.23 15.07 5.85 5.85 Total: -1.00 -33.79 388.23 -10.40 -44.18 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -7.25 Total: 5.16 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: -2.49 Total: -32.19 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.72 Total: -42.10 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -1.95 Total: -33.43 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Atomic # 16 Polarization: 37.24 SS G_CDS: -0.62 Total: 36.62 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.79 -10.40 -44.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886883764.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.109 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds