Wall clock time and date at job start Sat Apr 11 2020 06:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47071 * 2 1 4 4 N 1.46894 * 109.47154 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46831 * 300.00215 * 3 2 1 6 6 C 1.53000 * 109.47180 * 299.99705 * 5 3 2 7 7 C 1.53000 * 109.46998 * 60.00032 * 3 2 1 8 8 N 1.46503 * 109.47132 * 64.99632 * 7 3 2 9 9 S 1.65597 * 119.99916 * 164.99803 * 8 7 3 10 10 O 1.42100 * 106.40221 * 311.46434 * 9 8 7 11 11 O 1.42100 * 106.40331 * 178.54440 * 9 8 7 12 12 C 1.76198 * 107.21897 * 65.00477 * 9 8 7 13 13 C 1.38233 * 120.00076 * 90.00038 * 12 9 8 14 14 C 1.38237 * 120.00111 * 179.97438 * 13 12 9 15 15 C 1.38231 * 119.99929 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99766 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47151 * 90.00279 * 16 15 14 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99694 * 180.27762 * 17 16 15 20 20 N 1.31523 * 119.99908 * 179.72112 * 19 17 16 21 21 Si 1.86800 * 120.00405 * 359.71709 * 19 17 16 22 22 H 1.48500 * 109.47210 * 90.00069 * 21 19 17 23 23 H 1.48504 * 109.47424 * 210.00300 * 21 19 17 24 24 H 1.48502 * 109.46888 * 330.00390 * 21 19 17 25 25 C 1.38233 * 120.00119 * 0.25187 * 15 14 13 26 26 C 1.38231 * 119.99963 * 269.97887 * 12 9 8 27 27 H 1.08997 * 109.46955 * 299.99489 * 1 2 3 28 28 H 1.08991 * 109.47208 * 60.00097 * 1 2 3 29 29 H 1.09000 * 109.46866 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46989 * 239.99955 * 2 1 3 31 31 H 1.08999 * 109.47099 * 120.00195 * 2 1 3 32 32 H 1.00897 * 111.00096 * 56.04022 * 4 3 2 33 33 H 1.00896 * 111.00253 * 180.02562 * 4 3 2 34 34 H 1.08997 * 109.46929 * 60.00071 * 5 3 2 35 35 H 1.09000 * 109.46755 * 179.97438 * 5 3 2 36 36 H 1.08997 * 109.46574 * 180.02562 * 6 5 3 37 37 H 1.09000 * 109.46772 * 300.00593 * 6 5 3 38 38 H 1.08999 * 109.46769 * 60.00430 * 6 5 3 39 39 H 1.09002 * 109.47144 * 305.00416 * 7 3 2 40 40 H 1.08995 * 109.47238 * 184.99823 * 7 3 2 41 41 H 0.96993 * 120.00102 * 345.00526 * 8 7 3 42 42 H 1.08000 * 120.00181 * 359.97438 * 13 12 9 43 43 H 1.08003 * 119.99517 * 179.97438 * 14 13 12 44 44 H 1.09000 * 109.47088 * 329.99418 * 16 15 14 45 45 H 1.09007 * 109.46560 * 209.99923 * 16 15 14 46 46 H 0.96995 * 120.00181 * 179.97438 * 20 19 17 47 47 H 1.08002 * 120.00409 * 179.72430 * 25 15 14 48 48 H 1.08004 * 120.00378 * 359.97438 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 1.5299 2.1637 -1.2493 6 6 2.0400 1.4425 -2.4985 7 6 1.5300 2.1638 1.2493 8 7 2.1141 1.5461 2.4424 9 16 2.0459 2.3311 3.8989 10 8 2.4852 3.6611 3.6588 11 8 2.6589 1.4696 4.8482 12 6 0.3469 2.4425 4.3523 13 6 -0.2364 1.4366 5.0998 14 6 -1.5692 1.5243 5.4560 15 6 -2.3188 2.6176 5.0642 16 6 -3.7720 2.7128 5.4520 17 6 -3.8931 3.4220 6.7762 18 1 -3.0064 3.7686 7.2861 19 6 -5.1353 3.6227 7.3396 20 7 -5.2406 4.2367 8.4979 21 14 -6.6689 3.0226 6.4578 22 1 -6.9741 1.6336 6.8853 23 1 -7.8126 3.9073 6.7961 24 1 -6.4390 3.0498 4.9910 25 6 -1.7371 3.6207 4.3118 26 6 -0.4026 3.5360 3.9608 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8702 0.9165 -0.7821 33 1 3.8706 2.3845 -0.0002 34 1 0.4400 2.1637 -1.2492 35 1 1.8929 3.1915 -1.2490 36 1 1.6769 1.9566 -3.3884 37 1 3.1300 1.4426 -2.4984 38 1 1.6766 0.4149 -2.4985 39 1 0.4437 2.0868 1.2952 40 1 1.8184 3.2140 1.2057 41 1 2.5409 0.6774 2.3793 42 1 0.3492 0.5822 5.4056 43 1 -2.0249 0.7381 6.0397 44 1 -4.1919 1.7105 5.5367 45 1 -4.3155 3.2712 4.6897 46 1 -6.1146 4.3782 8.8941 47 1 -2.3239 4.4728 4.0018 48 1 0.0532 4.3224 3.3774 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886883764.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:20 Heat of formation + Delta-G solvation = -93.167775 kcal Electronic energy + Delta-G solvation = -28035.083956 eV Core-core repulsion = 24215.001416 eV Total energy + Delta-G solvation = -3820.082540 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.25351 -39.96009 -38.29060 -36.93094 -35.54575 -35.08779 -33.54065 -32.51603 -31.96076 -31.42237 -29.69966 -28.14882 -25.27814 -24.84694 -23.99875 -23.71426 -22.29914 -20.48968 -19.68351 -19.03060 -18.95734 -18.32107 -17.32494 -17.02901 -16.71511 -16.46029 -15.99964 -15.89305 -15.81085 -15.50418 -15.33198 -14.96667 -14.60807 -14.45934 -14.20276 -14.03655 -13.64502 -13.58680 -13.49568 -13.41537 -13.29223 -13.17936 -13.11082 -12.78866 -12.56210 -12.51739 -12.40520 -12.19046 -12.06927 -11.92790 -11.76745 -11.72007 -11.57777 -11.47976 -11.21898 -10.82862 -10.33782 -9.95624 -9.92637 -9.50037 -8.33699 -6.41062 -0.57759 -0.06660 0.39896 1.36109 1.37792 1.49288 2.09252 2.32481 2.56846 2.84235 3.00712 3.34512 3.60285 3.69194 3.88070 3.93185 3.98693 4.05602 4.08624 4.32523 4.41624 4.46760 4.48492 4.55786 4.59973 4.68196 4.78892 4.79389 4.84946 4.85879 4.93357 4.99908 5.03546 5.10950 5.13496 5.17977 5.27537 5.29490 5.32891 5.33401 5.41324 5.49366 5.59947 5.78126 5.94432 6.19074 6.20287 6.37312 6.65655 6.70376 7.22889 8.82829 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015048 B = 0.002893 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.306408 B = 9677.382033 C =10754.998789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.111 4.111 3 C 0.122 3.878 4 N -0.842 5.842 5 C -0.155 4.155 6 C -0.152 4.152 7 C 0.116 3.884 8 N -1.087 6.087 9 S 2.724 3.276 10 O -0.986 6.986 11 O -0.991 6.991 12 C -0.698 4.698 13 C -0.021 4.021 14 C -0.154 4.154 15 C -0.002 4.002 16 C 0.012 3.988 17 C -0.526 4.526 18 H 0.026 0.974 19 C 0.008 3.992 20 N -0.948 5.948 21 Si 0.954 3.046 22 H -0.264 1.264 23 H -0.284 1.284 24 H -0.240 1.240 25 C -0.152 4.152 26 C -0.022 4.022 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.350 0.650 33 H 0.346 0.654 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.428 0.572 42 H 0.152 0.848 43 H 0.133 0.867 44 H 0.039 0.961 45 H 0.042 0.958 46 H 0.269 0.731 47 H 0.135 0.865 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.451 -9.121 -25.470 30.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.149 4.149 3 C 0.028 3.972 4 N -0.374 5.374 5 C -0.195 4.195 6 C -0.210 4.210 7 C -0.010 4.010 8 N -0.850 5.850 9 S 2.814 3.186 10 O -0.976 6.976 11 O -0.981 6.981 12 C -0.785 4.785 13 C -0.040 4.040 14 C -0.173 4.173 15 C -0.002 4.002 16 C -0.025 4.025 17 C -0.564 4.564 18 H 0.044 0.956 19 C -0.189 4.189 20 N -0.588 5.588 21 Si 0.776 3.224 22 H -0.189 1.189 23 H -0.210 1.210 24 H -0.164 1.164 25 C -0.171 4.171 26 C -0.041 4.041 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.165 0.835 33 H 0.159 0.841 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.266 0.734 42 H 0.170 0.830 43 H 0.151 0.849 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.153 0.847 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 14.915 -8.944 -24.144 29.755 hybrid contribution -1.594 0.254 -0.362 1.654 sum 13.321 -8.690 -24.506 29.214 Atomic orbital electron populations 1.21940 0.95523 1.02125 1.02269 1.21541 0.95783 0.94743 1.02869 1.20873 0.88573 0.95649 0.92121 1.58783 1.05752 1.20863 1.51970 1.22321 1.02478 0.99730 0.94989 1.21807 1.01305 1.00970 0.96896 1.21638 0.98156 0.97235 0.84005 1.54925 1.73162 1.34999 1.21965 1.00740 0.72804 0.72637 0.72372 1.93524 1.79902 1.38648 1.85505 1.93529 1.75404 1.67799 1.61393 1.30835 1.26408 1.04561 1.16729 1.21015 0.94367 0.96727 0.91938 1.21346 0.94729 0.99407 1.01827 1.20576 0.96981 0.92697 0.89979 1.18823 0.90242 0.97768 0.95655 1.21069 0.93220 1.37725 1.04382 0.95608 1.26020 1.02920 0.94577 0.95381 1.70062 1.25703 1.43787 1.19221 0.85607 0.77591 0.78653 0.80514 1.18918 1.20996 1.16362 1.21350 0.95853 0.99361 1.00562 1.21039 0.93084 0.95060 0.94928 0.92849 0.91714 0.92464 0.90547 0.91598 0.83483 0.84081 0.90714 0.91600 0.92428 0.92243 0.91891 0.90243 0.90545 0.73350 0.82998 0.84909 0.94278 0.93993 0.92226 0.84718 0.82750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.22 71.98 0.66 -1.19 16 2 C -0.11 -1.16 4.77 30.60 0.15 -1.01 16 3 C 0.12 1.29 0.43 3.53 0.00 1.29 16 4 N -0.84 -8.37 8.42 -151.57 -1.28 -9.64 16 5 C -0.16 -1.37 4.79 30.59 0.15 -1.22 16 6 C -0.15 -1.05 9.22 71.98 0.66 -0.38 16 7 C 0.12 1.72 5.06 86.38 0.44 2.15 16 8 N -1.09 -19.25 5.62 -187.49 -1.05 -20.30 16 9 S 2.72 70.81 5.74 -56.49 -0.32 70.49 16 10 O -0.99 -30.18 16.75 -128.00 -2.14 -32.32 16 11 O -0.99 -31.20 17.28 -128.00 -2.21 -33.41 16 12 C -0.70 -20.53 5.95 22.27 0.13 -20.39 16 13 C -0.02 -0.66 9.52 22.27 0.21 -0.45 16 14 C -0.15 -5.53 9.70 22.27 0.22 -5.31 16 15 C 0.00 -0.08 5.07 -19.87 -0.10 -0.18 16 16 C 0.01 0.55 4.17 29.10 0.12 0.67 16 17 C -0.53 -29.81 9.65 25.60 0.25 -29.56 16 18 H 0.03 1.66 7.98 -2.91 -0.02 1.63 16 19 C 0.01 0.48 5.47 84.65 0.46 0.95 16 20 N -0.95 -58.80 13.96 21.45 0.30 -58.50 16 21 Si 0.95 42.27 27.46 68.60 1.88 44.16 16 22 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 H -0.24 -9.62 6.55 99.48 0.65 -8.97 16 25 C -0.15 -5.36 9.70 22.27 0.22 -5.14 16 26 C -0.02 -0.66 9.52 22.27 0.21 -0.45 16 27 H 0.05 0.73 6.32 -2.39 -0.02 0.72 16 28 H 0.06 0.65 6.43 -2.39 -0.02 0.63 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.65 6.43 -2.39 -0.02 0.63 16 31 H 0.07 0.78 6.90 -2.39 -0.02 0.76 16 32 H 0.35 2.46 7.31 -89.70 -0.66 1.81 16 33 H 0.35 3.39 9.00 -89.70 -0.81 2.58 16 34 H 0.07 0.69 6.43 -2.39 -0.02 0.67 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.06 0.33 6.76 -2.39 -0.02 0.31 16 38 H 0.06 0.42 6.43 -2.39 -0.02 0.41 16 39 H 0.08 1.12 6.17 -2.39 -0.01 1.10 16 40 H 0.08 1.16 7.75 -2.39 -0.02 1.14 16 41 H 0.43 6.58 7.33 -96.76 -0.71 5.87 16 42 H 0.15 3.99 7.62 -2.91 -0.02 3.97 16 43 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 44 H 0.04 1.66 7.51 -2.39 -0.02 1.64 16 45 H 0.04 1.79 7.15 -2.38 -0.02 1.78 16 46 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16 47 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 48 H 0.15 3.82 7.62 -2.91 -0.02 3.80 16 Total: -1.00 -74.07 388.23 -2.28 -76.35 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: -1.23 Total: 23.41 kcal Atomic # 6 Polarization: -64.01 SS G_CDS: 3.78 Total: -60.23 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -2.03 Total: -88.44 kcal Atomic # 8 Polarization: -61.37 SS G_CDS: -4.36 Total: -65.73 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.88 Total: 44.16 kcal Atomic # 16 Polarization: 70.81 SS G_CDS: -0.32 Total: 70.49 kcal Total: -74.07 -2.28 -76.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886883764.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.820 kcal (2) G-P(sol) polarization free energy of solvation -74.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds