Wall clock time and date at job start Sat Apr 11 2020 06:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47129 * 2 1 4 4 C 1.52993 * 109.47054 * 239.99920 * 2 1 3 5 5 C 1.53007 * 109.47208 * 293.94749 * 4 2 1 6 6 H 1.09003 * 109.46608 * 54.66677 * 5 4 2 7 7 C 1.52997 * 109.46956 * 174.66620 * 5 4 2 8 8 N 1.46905 * 109.47168 * 176.41013 * 7 5 4 9 9 N 1.46496 * 109.47153 * 294.66641 * 5 4 2 10 10 S 1.65600 * 119.99646 * 117.71199 * 9 5 4 11 11 O 1.42102 * 106.39993 * 178.28619 * 10 9 5 12 12 O 1.42096 * 106.40424 * 311.20085 * 10 9 5 13 13 C 1.76197 * 107.21826 * 64.74559 * 10 9 5 14 14 C 1.38235 * 120.00072 * 273.91115 * 13 10 9 15 15 C 1.38237 * 119.99995 * 179.76935 * 14 13 10 16 16 C 1.38230 * 120.00056 * 0.48292 * 15 14 13 17 17 C 1.50699 * 120.00199 * 179.76922 * 16 15 14 18 18 C 1.50700 * 109.47173 * 270.02623 * 17 16 15 19 19 H 1.08002 * 119.99820 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00104 * 180.02562 * 18 17 16 21 21 N 1.31508 * 120.00138 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99863 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47063 * 90.00014 * 22 20 18 24 24 H 1.48493 * 109.47361 * 210.00377 * 22 20 18 25 25 H 1.48504 * 109.46953 * 330.00246 * 22 20 18 26 26 C 1.38234 * 119.99925 * 359.79595 * 16 15 14 27 27 C 1.38236 * 120.00352 * 359.95219 * 26 16 15 28 28 H 1.09002 * 109.46711 * 59.99838 * 1 2 3 29 29 H 1.08994 * 109.47545 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47455 * 300.00594 * 1 2 3 31 31 H 1.08998 * 109.46723 * 119.99665 * 2 1 3 32 32 H 1.09003 * 109.47262 * 295.06429 * 3 2 1 33 33 H 1.09000 * 109.47447 * 55.06445 * 3 2 1 34 34 H 1.09000 * 109.47242 * 175.06233 * 3 2 1 35 35 H 1.09000 * 109.47584 * 53.95431 * 4 2 1 36 36 H 1.09004 * 109.47115 * 173.95069 * 4 2 1 37 37 H 1.09005 * 109.47117 * 296.40649 * 7 5 4 38 38 H 1.08999 * 109.47678 * 56.41132 * 7 5 4 39 39 H 1.00905 * 110.99719 * 61.51092 * 8 7 5 40 40 H 1.00895 * 110.99947 * 185.46858 * 8 7 5 41 41 H 0.96998 * 120.00028 * 297.70687 * 9 5 4 42 42 H 1.08001 * 119.99723 * 359.97438 * 14 13 10 43 43 H 1.07997 * 119.99421 * 180.25417 * 15 14 13 44 44 H 1.09002 * 109.46826 * 30.02067 * 17 16 15 45 45 H 1.09002 * 109.47079 * 150.02242 * 17 16 15 46 46 H 0.96997 * 120.00462 * 179.97438 * 21 20 18 47 47 H 1.08006 * 120.00133 * 179.97438 * 26 16 15 48 48 H 1.08004 * 120.00467 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6579 -2.2010 -1.1754 6 1 0.5822 -2.2914 -1.0244 7 6 2.0496 -2.8945 -2.4818 8 7 1.7618 -4.3314 -2.3788 9 7 2.3628 -2.8322 -0.0570 10 16 1.5048 -3.4835 1.2007 11 8 2.4602 -4.0456 2.0897 12 8 0.5613 -2.4973 1.5961 13 6 0.5734 -4.8320 0.5536 14 6 -0.6684 -4.6069 -0.0103 15 6 -1.3970 -5.6642 -0.5223 16 6 -0.8882 -6.9480 -0.4612 17 6 -1.6848 -8.1014 -1.0146 18 6 -2.5657 -8.6689 0.0683 19 1 -2.5500 -8.2378 1.0585 20 6 -3.3910 -9.7392 -0.2045 21 7 -4.1594 -10.2348 0.7406 22 14 -3.4176 -10.4853 -1.9169 23 1 -2.4021 -11.5654 -2.0020 24 1 -4.7639 -11.0489 -2.1904 25 1 -3.1079 -9.4345 -2.9195 26 6 0.3511 -7.1739 0.1079 27 6 1.0820 -6.1160 0.6152 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.7507 1.9302 -0.9309 33 1 1.6063 1.9812 0.8425 34 1 3.1264 1.4438 0.0885 35 1 1.5910 -0.2738 -2.1359 36 1 3.1246 -0.6284 -1.3050 37 1 1.4776 -2.4675 -3.3055 38 1 3.1143 -2.7495 -2.6651 39 1 0.7765 -4.4932 -2.2333 40 1 2.0931 -4.8258 -3.1935 41 1 3.3321 -2.8687 -0.0533 42 1 -1.0679 -3.6044 -0.0539 43 1 -2.3654 -5.4876 -0.9665 44 1 -2.3041 -7.7520 -1.8408 45 1 -1.0045 -8.8744 -1.3721 46 1 -4.7403 -10.9875 0.5486 47 1 0.7485 -8.1771 0.1560 48 1 2.0505 -6.2924 1.0595 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886883956.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:27 Heat of formation + Delta-G solvation = -73.830109 kcal Electronic energy + Delta-G solvation = -28653.297371 eV Core-core repulsion = 24834.053375 eV Total energy + Delta-G solvation = -3819.243996 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.87675 -38.48482 -36.94847 -35.68278 -35.14707 -33.63905 -32.88175 -31.69568 -30.56196 -29.20964 -27.91534 -27.23655 -25.10135 -23.45466 -22.40424 -21.59894 -20.68762 -20.10035 -19.49860 -17.85436 -17.20277 -16.89827 -16.55344 -15.81118 -15.33172 -15.24597 -15.01004 -14.54327 -14.49069 -14.25414 -14.00247 -13.80862 -13.48314 -13.38979 -13.09775 -12.72548 -12.66159 -12.53956 -12.37955 -11.96168 -11.93088 -11.85370 -11.82231 -11.73078 -11.67865 -11.46450 -11.02721 -10.88398 -10.84465 -10.75932 -10.62395 -10.49138 -10.20957 -10.06058 -9.57580 -9.47339 -8.81053 -8.69402 -8.53262 -8.34999 -6.17585 -4.18696 0.63094 1.38602 1.82059 3.14242 3.20133 3.28422 3.28930 3.85418 4.10784 4.21875 4.30980 4.51200 4.57997 4.69816 4.80850 4.96974 5.02524 5.08240 5.12779 5.20426 5.25872 5.29741 5.36660 5.48206 5.56629 5.59492 5.64034 5.68420 5.76235 5.82980 5.86500 5.89370 6.01718 6.09634 6.24508 6.30029 6.31833 6.39557 6.53016 6.74603 6.78434 6.83648 6.91464 7.03031 7.27708 7.35662 7.36930 7.56034 8.36146 8.86819 9.40912 10.95075 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018912 B = 0.002982 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.224878 B = 9386.698165 C = 9628.065519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.122 4.122 5 C 0.156 3.844 6 H 0.089 0.911 7 C 0.050 3.950 8 N -0.845 5.845 9 N -1.097 6.097 10 S 2.694 3.306 11 O -0.972 6.972 12 O -0.961 6.961 13 C -0.680 4.680 14 C -0.030 4.030 15 C -0.145 4.145 16 C 0.029 3.971 17 C 0.007 3.993 18 C -0.519 4.519 19 H 0.075 0.925 20 C 0.072 3.928 21 N -0.895 5.895 22 Si 0.879 3.121 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.265 1.265 26 C -0.141 4.141 27 C -0.007 4.007 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.034 0.966 38 H 0.076 0.924 39 H 0.344 0.656 40 H 0.342 0.658 41 H 0.415 0.585 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.031 0.969 45 H 0.028 0.972 46 H 0.266 0.734 47 H 0.126 0.874 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.193 19.826 -8.254 25.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.162 4.162 5 C 0.047 3.953 6 H 0.107 0.893 7 C -0.083 4.083 8 N -0.375 5.375 9 N -0.854 5.854 10 S 2.787 3.213 11 O -0.963 6.963 12 O -0.951 6.951 13 C -0.770 4.770 14 C -0.049 4.049 15 C -0.164 4.164 16 C 0.029 3.971 17 C -0.030 4.030 18 C -0.556 4.556 19 H 0.093 0.907 20 C -0.131 4.131 21 N -0.533 5.533 22 Si 0.706 3.294 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.190 1.190 26 C -0.160 4.160 27 C -0.027 4.027 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.158 0.842 40 H 0.155 0.845 41 H 0.249 0.751 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.050 0.950 45 H 0.046 0.954 46 H 0.076 0.924 47 H 0.144 0.856 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 14.337 20.017 -6.700 25.517 hybrid contribution -0.634 -1.032 -2.198 2.510 sum 13.703 18.984 -8.898 25.047 Atomic orbital electron populations 1.21867 0.94766 1.02754 1.00941 1.21084 0.96578 0.95618 0.98268 1.21847 1.00601 0.96335 1.01618 1.21991 1.01612 0.93878 0.98722 1.20865 0.96659 0.91720 0.86009 0.89285 1.22171 1.01428 0.89096 0.95566 1.58615 1.23805 1.08473 1.46634 1.55348 1.18444 1.73474 1.38134 1.01655 0.73358 0.73684 0.72610 1.93556 1.61615 1.79406 1.61689 1.93578 1.63107 1.58203 1.80191 1.30249 1.10336 1.14980 1.21390 1.20666 0.91974 0.99104 0.93163 1.21132 1.00145 0.92390 1.02714 1.20595 0.92153 0.95171 0.89230 1.18956 0.95076 0.91621 0.97350 1.20841 1.22023 1.15454 0.97315 0.90683 1.24991 0.94845 0.96260 0.96987 1.69886 1.25545 1.24961 1.32895 0.86790 0.77633 0.79872 0.85094 1.20079 1.21145 1.18995 1.21162 0.95381 0.98922 1.00485 1.20673 0.98237 0.90960 0.92825 0.93602 0.91422 0.92700 0.90718 0.92926 0.92692 0.93027 0.90878 0.91249 0.94767 0.90577 0.84193 0.84526 0.75128 0.85822 0.85675 0.95037 0.95406 0.92409 0.85631 0.85420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.48 37.16 0.32 -1.10 16 2 C -0.10 -0.85 2.62 -90.62 -0.24 -1.09 16 3 C -0.15 -1.09 9.19 37.16 0.34 -0.75 16 4 C -0.12 -0.85 4.34 -26.73 -0.12 -0.97 16 5 C 0.16 1.26 2.44 -67.93 -0.17 1.09 16 6 H 0.09 0.78 5.35 -51.93 -0.28 0.51 16 7 C 0.05 0.35 6.46 -3.82 -0.02 0.33 16 8 N -0.84 -7.39 9.13 -10.37 -0.09 -7.48 16 9 N -1.10 -10.28 4.51 -4.89 -0.02 -10.30 16 10 S 2.69 36.15 5.60 -107.50 -0.60 35.55 16 11 O -0.97 -15.99 17.19 -57.17 -0.98 -16.97 16 12 O -0.96 -14.28 14.02 -57.17 -0.80 -15.09 16 13 C -0.68 -10.09 5.47 -39.58 -0.22 -10.31 16 14 C -0.03 -0.44 8.19 -39.58 -0.32 -0.76 16 15 C -0.14 -2.46 9.70 -39.58 -0.38 -2.84 16 16 C 0.03 0.56 5.07 -104.63 -0.53 0.03 16 17 C 0.01 0.16 4.17 -29.04 -0.12 0.04 16 18 C -0.52 -14.17 9.65 -34.44 -0.33 -14.50 16 19 H 0.08 2.27 7.98 -52.49 -0.42 1.86 16 20 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 21 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 22 Si 0.88 20.55 27.47 -169.99 -4.67 15.88 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -5.85 6.54 56.52 0.37 -5.48 16 26 C -0.14 -2.49 9.70 -39.58 -0.38 -2.88 16 27 C -0.01 -0.12 9.53 -39.58 -0.38 -0.49 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.73 5.15 -51.93 -0.27 0.46 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.78 6.71 -51.93 -0.35 0.43 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.34 3.40 7.74 -39.29 -0.30 3.09 16 40 H 0.34 2.60 9.08 -39.29 -0.36 2.25 16 41 H 0.41 3.21 8.96 -34.47 -0.31 2.90 16 42 H 0.12 1.55 7.45 -52.49 -0.39 1.16 16 43 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 44 H 0.03 0.69 7.14 -51.93 -0.37 0.31 16 45 H 0.03 0.60 7.51 -51.93 -0.39 0.21 16 46 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.13 2.14 8.06 -52.48 -0.42 1.72 16 48 H 0.13 1.87 7.53 -52.48 -0.40 1.47 16 LS Contribution 391.42 15.07 5.90 5.90 Total: -1.00 -32.92 391.42 -10.80 -43.73 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -7.65 Total: 7.15 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: -2.65 Total: -32.31 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.66 Total: -43.84 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -1.78 Total: -32.06 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Atomic # 16 Polarization: 36.15 SS G_CDS: -0.60 Total: 35.55 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.92 -10.80 -43.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886883956.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.105 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds