Wall clock time and date at job start Sat Apr 11 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47129 * 2 1 4 4 C 1.52993 * 109.47054 * 239.99920 * 2 1 3 5 5 C 1.53007 * 109.47208 * 293.94749 * 4 2 1 6 6 H 1.09003 * 109.46608 * 54.66677 * 5 4 2 7 7 C 1.52997 * 109.46956 * 174.66620 * 5 4 2 8 8 N 1.46905 * 109.47168 * 176.41013 * 7 5 4 9 9 N 1.46496 * 109.47153 * 294.66641 * 5 4 2 10 10 S 1.65600 * 119.99646 * 117.71199 * 9 5 4 11 11 O 1.42102 * 106.39993 * 178.28619 * 10 9 5 12 12 O 1.42096 * 106.40424 * 311.20085 * 10 9 5 13 13 C 1.76197 * 107.21826 * 64.74559 * 10 9 5 14 14 C 1.38235 * 120.00072 * 273.91115 * 13 10 9 15 15 C 1.38237 * 119.99995 * 179.76935 * 14 13 10 16 16 C 1.38230 * 120.00056 * 0.48292 * 15 14 13 17 17 C 1.50699 * 120.00199 * 179.76922 * 16 15 14 18 18 C 1.50700 * 109.47173 * 270.02623 * 17 16 15 19 19 H 1.08002 * 119.99820 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00104 * 180.02562 * 18 17 16 21 21 N 1.31508 * 120.00138 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99863 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47063 * 90.00014 * 22 20 18 24 24 H 1.48493 * 109.47361 * 210.00377 * 22 20 18 25 25 H 1.48504 * 109.46953 * 330.00246 * 22 20 18 26 26 C 1.38234 * 119.99925 * 359.79595 * 16 15 14 27 27 C 1.38236 * 120.00352 * 359.95219 * 26 16 15 28 28 H 1.09002 * 109.46711 * 59.99838 * 1 2 3 29 29 H 1.08994 * 109.47545 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47455 * 300.00594 * 1 2 3 31 31 H 1.08998 * 109.46723 * 119.99665 * 2 1 3 32 32 H 1.09003 * 109.47262 * 295.06429 * 3 2 1 33 33 H 1.09000 * 109.47447 * 55.06445 * 3 2 1 34 34 H 1.09000 * 109.47242 * 175.06233 * 3 2 1 35 35 H 1.09000 * 109.47584 * 53.95431 * 4 2 1 36 36 H 1.09004 * 109.47115 * 173.95069 * 4 2 1 37 37 H 1.09005 * 109.47117 * 296.40649 * 7 5 4 38 38 H 1.08999 * 109.47678 * 56.41132 * 7 5 4 39 39 H 1.00905 * 110.99719 * 61.51092 * 8 7 5 40 40 H 1.00895 * 110.99947 * 185.46858 * 8 7 5 41 41 H 0.96998 * 120.00028 * 297.70687 * 9 5 4 42 42 H 1.08001 * 119.99723 * 359.97438 * 14 13 10 43 43 H 1.07997 * 119.99421 * 180.25417 * 15 14 13 44 44 H 1.09002 * 109.46826 * 30.02067 * 17 16 15 45 45 H 1.09002 * 109.47079 * 150.02242 * 17 16 15 46 46 H 0.96997 * 120.00462 * 179.97438 * 21 20 18 47 47 H 1.08006 * 120.00133 * 179.97438 * 26 16 15 48 48 H 1.08004 * 120.00467 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6579 -2.2010 -1.1754 6 1 0.5822 -2.2914 -1.0244 7 6 2.0496 -2.8945 -2.4818 8 7 1.7618 -4.3314 -2.3788 9 7 2.3628 -2.8322 -0.0570 10 16 1.5048 -3.4835 1.2007 11 8 2.4602 -4.0456 2.0897 12 8 0.5613 -2.4973 1.5961 13 6 0.5734 -4.8320 0.5536 14 6 -0.6684 -4.6069 -0.0103 15 6 -1.3970 -5.6642 -0.5223 16 6 -0.8882 -6.9480 -0.4612 17 6 -1.6848 -8.1014 -1.0146 18 6 -2.5657 -8.6689 0.0683 19 1 -2.5500 -8.2378 1.0585 20 6 -3.3910 -9.7392 -0.2045 21 7 -4.1594 -10.2348 0.7406 22 14 -3.4176 -10.4853 -1.9169 23 1 -2.4021 -11.5654 -2.0020 24 1 -4.7639 -11.0489 -2.1904 25 1 -3.1079 -9.4345 -2.9195 26 6 0.3511 -7.1739 0.1079 27 6 1.0820 -6.1160 0.6152 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.7507 1.9302 -0.9309 33 1 1.6063 1.9812 0.8425 34 1 3.1264 1.4438 0.0885 35 1 1.5910 -0.2738 -2.1359 36 1 3.1246 -0.6284 -1.3050 37 1 1.4776 -2.4675 -3.3055 38 1 3.1143 -2.7495 -2.6651 39 1 0.7765 -4.4932 -2.2333 40 1 2.0931 -4.8258 -3.1935 41 1 3.3321 -2.8687 -0.0533 42 1 -1.0679 -3.6044 -0.0539 43 1 -2.3654 -5.4876 -0.9665 44 1 -2.3041 -7.7520 -1.8408 45 1 -1.0045 -8.8744 -1.3721 46 1 -4.7403 -10.9875 0.5486 47 1 0.7485 -8.1771 0.1560 48 1 2.0505 -6.2924 1.0595 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886883956.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:26 Heat of formation + Delta-G solvation = -97.738830 kcal Electronic energy + Delta-G solvation = -28654.334131 eV Core-core repulsion = 24834.053375 eV Total energy + Delta-G solvation = -3820.280756 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.18326 -39.21458 -38.10202 -36.86105 -35.82034 -35.47523 -33.61248 -33.47282 -31.86695 -29.87660 -29.63431 -27.89916 -25.68601 -25.21280 -23.68475 -22.27206 -22.22774 -20.74406 -20.55176 -19.00894 -18.96073 -18.31433 -17.35078 -16.73845 -16.59992 -16.29504 -15.96511 -15.86745 -15.66854 -15.24953 -15.18898 -14.71132 -14.57633 -14.38579 -14.21485 -14.07358 -13.94210 -13.58025 -13.47088 -13.33230 -13.11154 -13.05874 -12.87599 -12.67642 -12.53310 -12.47804 -12.36139 -12.15042 -12.01363 -11.86617 -11.70212 -11.66510 -11.41654 -11.38202 -11.27156 -10.81508 -10.32033 -9.84707 -9.80369 -9.39622 -8.32165 -6.38924 -0.47140 0.06866 0.50769 1.36657 1.38105 1.49534 2.13748 2.33479 2.65433 2.94777 3.02483 3.43677 3.54210 3.93225 3.98436 4.02886 4.08931 4.16219 4.18922 4.34763 4.42023 4.45707 4.54768 4.58660 4.63993 4.83011 4.87999 4.91731 4.92513 4.94819 4.99096 5.04837 5.12200 5.14177 5.20325 5.21294 5.25632 5.36182 5.39642 5.47266 5.52419 5.64633 5.67118 5.86920 6.03613 6.22048 6.23941 6.40745 6.65188 6.68224 7.24878 8.84455 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018912 B = 0.002982 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.224878 B = 9386.698165 C = 9628.065519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.102 4.102 3 C -0.145 4.145 4 C -0.116 4.116 5 C 0.150 3.850 6 H 0.083 0.917 7 C 0.054 3.946 8 N -0.858 5.858 9 N -1.080 6.080 10 S 2.714 3.286 11 O -1.002 7.002 12 O -0.974 6.974 13 C -0.675 4.675 14 C -0.021 4.021 15 C -0.149 4.149 16 C 0.000 4.000 17 C 0.013 3.987 18 C -0.524 4.524 19 H 0.025 0.975 20 C 0.007 3.993 21 N -0.949 5.949 22 Si 0.954 3.046 23 H -0.266 1.266 24 H -0.285 1.285 25 H -0.239 1.239 26 C -0.150 4.150 27 C -0.010 4.010 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.337 0.663 40 H 0.348 0.652 41 H 0.426 0.574 42 H 0.149 0.851 43 H 0.131 0.869 44 H 0.041 0.959 45 H 0.036 0.964 46 H 0.268 0.732 47 H 0.125 0.875 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.796 21.628 -11.010 28.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C -0.202 4.202 4 C -0.156 4.156 5 C 0.042 3.958 6 H 0.101 0.899 7 C -0.079 4.079 8 N -0.388 5.388 9 N -0.842 5.842 10 S 2.805 3.195 11 O -0.992 6.992 12 O -0.964 6.964 13 C -0.763 4.763 14 C -0.040 4.040 15 C -0.168 4.168 16 C 0.000 4.000 17 C -0.024 4.024 18 C -0.562 4.562 19 H 0.044 0.956 20 C -0.190 4.190 21 N -0.589 5.589 22 Si 0.776 3.224 23 H -0.191 1.191 24 H -0.211 1.211 25 H -0.163 1.163 26 C -0.169 4.169 27 C -0.030 4.030 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.149 0.851 40 H 0.161 0.839 41 H 0.262 0.738 42 H 0.167 0.833 43 H 0.149 0.851 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.077 0.923 47 H 0.143 0.857 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 15.963 21.825 -9.467 28.649 hybrid contribution -1.080 -1.439 -1.239 2.185 sum 14.883 20.386 -10.706 27.417 Atomic orbital electron populations 1.21897 0.95668 1.01980 1.01111 1.21109 0.95883 0.96582 0.98450 1.21826 1.01024 0.95380 1.01981 1.21966 1.02689 0.92503 0.98399 1.21096 0.96256 0.92639 0.85796 0.89939 1.22189 1.02469 0.88093 0.95127 1.58646 1.23234 1.09677 1.47271 1.54998 1.18828 1.72513 1.37816 1.01020 0.72774 0.72948 0.72775 1.93514 1.62259 1.79995 1.63434 1.93568 1.63849 1.58103 1.80858 1.30604 1.10481 1.15302 1.19887 1.20882 0.91538 0.99662 0.91897 1.21236 1.00546 0.92138 1.02901 1.20428 0.92928 0.95154 0.91497 1.18797 0.94762 0.92880 0.95952 1.21102 1.22908 1.15386 0.96805 0.95627 1.26020 0.94265 0.96812 1.01885 1.70060 1.27036 1.26040 1.35781 0.85610 0.77719 0.79510 0.79534 1.19102 1.21109 1.16254 1.21217 0.95316 0.99554 1.00811 1.20807 0.98631 0.90950 0.92585 0.91933 0.92624 0.94089 0.92728 0.91683 0.93458 0.92240 0.88985 0.89706 0.93221 0.89263 0.85058 0.83865 0.73782 0.83347 0.85101 0.94074 0.94592 0.92300 0.85706 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.48 71.98 0.61 -2.05 16 2 C -0.10 -1.57 2.62 -10.80 -0.03 -1.60 16 3 C -0.14 -1.83 9.19 71.98 0.66 -1.16 16 4 C -0.12 -1.22 4.34 30.59 0.13 -1.09 16 5 C 0.15 1.99 2.44 44.99 0.11 2.10 16 6 H 0.08 1.24 5.35 -2.39 -0.01 1.23 16 7 C 0.05 0.58 6.46 86.30 0.56 1.13 16 8 N -0.86 -12.97 9.13 -186.71 -1.70 -14.67 16 9 N -1.08 -17.90 4.51 -169.39 -0.76 -18.66 16 10 S 2.71 69.54 5.60 -56.49 -0.32 69.22 16 11 O -1.00 -32.06 17.19 -128.00 -2.20 -34.26 16 12 O -0.97 -27.99 14.02 -128.00 -1.79 -29.79 16 13 C -0.68 -19.34 5.47 22.27 0.12 -19.21 16 14 C -0.02 -0.59 8.19 22.27 0.18 -0.40 16 15 C -0.15 -5.00 9.70 22.27 0.22 -4.78 16 16 C 0.00 0.01 5.07 -19.87 -0.10 -0.09 16 17 C 0.01 0.59 4.17 29.10 0.12 0.71 16 18 C -0.52 -29.56 9.65 25.60 0.25 -29.31 16 19 H 0.03 1.64 7.98 -2.91 -0.02 1.62 16 20 C 0.01 0.42 5.47 84.66 0.46 0.89 16 21 N -0.95 -58.93 13.96 21.45 0.30 -58.63 16 22 Si 0.95 42.27 27.47 68.60 1.88 44.16 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 25 H -0.24 -9.53 6.54 99.48 0.65 -8.88 16 26 C -0.15 -5.34 9.70 22.27 0.22 -5.13 16 27 C -0.01 -0.33 9.53 22.27 0.21 -0.11 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 1.11 5.15 -2.39 -0.01 1.10 16 30 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 1.06 6.71 -2.39 -0.02 1.05 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.34 5.97 7.74 -89.69 -0.69 5.27 16 40 H 0.35 4.51 9.08 -89.70 -0.81 3.69 16 41 H 0.43 5.50 8.96 -96.75 -0.87 4.64 16 42 H 0.15 3.45 7.45 -2.91 -0.02 3.42 16 43 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 44 H 0.04 1.73 7.14 -2.39 -0.02 1.72 16 45 H 0.04 1.52 7.51 -2.39 -0.02 1.51 16 46 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 47 H 0.12 4.33 8.06 -2.91 -0.02 4.30 16 48 H 0.14 3.99 7.53 -2.91 -0.02 3.96 16 Total: -1.00 -73.43 391.42 -2.32 -75.75 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -1.45 Total: 27.00 kcal Atomic # 6 Polarization: -63.85 SS G_CDS: 3.72 Total: -60.12 kcal Atomic # 7 Polarization: -89.79 SS G_CDS: -2.17 Total: -91.96 kcal Atomic # 8 Polarization: -60.05 SS G_CDS: -3.99 Total: -64.05 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.88 Total: 44.16 kcal Atomic # 16 Polarization: 69.54 SS G_CDS: -0.32 Total: 69.22 kcal Total: -73.43 -2.32 -75.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886883956.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.986 kcal (2) G-P(sol) polarization free energy of solvation -73.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds