Wall clock time and date at job start Sat Apr 11 2020 06:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 H 1.09002 * 109.46829 * 305.00193 * 5 4 2 7 7 C 1.53001 * 109.47035 * 185.00124 * 5 4 2 8 8 N 1.46894 * 109.47084 * 184.99786 * 7 5 4 9 9 N 1.46501 * 109.47107 * 65.00275 * 5 4 2 10 10 S 1.65601 * 119.99708 * 214.99982 * 9 5 4 11 11 O 1.42103 * 106.40194 * 178.53659 * 10 9 5 12 12 O 1.42102 * 106.40175 * 311.45985 * 10 9 5 13 13 C 1.76204 * 107.21656 * 64.99908 * 10 9 5 14 14 C 1.38229 * 120.00164 * 269.72143 * 13 10 9 15 15 C 1.38230 * 120.00119 * 179.74767 * 14 13 10 16 16 C 1.38234 * 120.00182 * 0.52801 * 15 14 13 17 17 C 1.50698 * 120.00421 * 179.76816 * 16 15 14 18 18 C 1.50697 * 109.47059 * 269.98205 * 17 16 15 19 19 H 1.08004 * 120.00309 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99869 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00149 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00047 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.46960 * 89.99842 * 22 20 18 24 24 H 1.48498 * 109.46792 * 210.00011 * 22 20 18 25 25 H 1.48500 * 109.46797 * 329.99751 * 22 20 18 26 26 C 1.38236 * 119.99569 * 359.74929 * 16 15 14 27 27 C 1.38233 * 119.99754 * 90.00257 * 13 10 9 28 28 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 31 31 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 32 32 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 33 33 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 34 34 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 36 36 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 37 37 H 1.09002 * 109.47233 * 305.00183 * 7 5 4 38 38 H 1.08999 * 109.46982 * 64.99870 * 7 5 4 39 39 H 1.00896 * 111.00187 * 180.02562 * 8 7 5 40 40 H 1.00905 * 111.00402 * 303.95437 * 8 7 5 41 41 H 0.96996 * 119.99924 * 34.99215 * 9 5 4 42 42 H 1.08008 * 119.99828 * 0.02562 * 14 13 10 43 43 H 1.08009 * 120.00223 * 180.29947 * 15 14 13 44 44 H 1.09003 * 109.46863 * 29.98102 * 17 16 15 45 45 H 1.08993 * 109.47139 * 149.98101 * 17 16 15 46 46 H 0.96997 * 120.00316 * 179.97438 * 21 20 18 47 47 H 1.07998 * 119.99859 * 179.97438 * 26 16 15 48 48 H 1.07995 * 120.00583 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.8311 -1.1879 6 1 3.9954 0.1611 -1.0526 7 6 4.0852 -1.4395 -2.4917 8 7 5.5344 -1.6557 -2.3871 9 7 3.9480 -1.6873 -0.0625 10 16 5.3254 -1.3591 0.7962 11 8 5.3979 -2.3348 1.8267 12 8 6.3571 -1.1609 -0.1607 13 6 5.0840 0.1923 1.5961 14 6 5.4540 1.3627 0.9604 15 6 5.2599 2.5800 1.5858 16 6 4.7058 2.6264 2.8514 17 6 4.4989 3.9532 3.5353 18 6 5.7273 4.3029 4.3351 19 1 6.5735 3.6318 4.3467 20 6 5.7715 5.4803 5.0514 21 7 4.7419 6.2983 5.0361 22 14 7.2945 5.9142 6.0422 23 1 8.2352 6.6863 5.1914 24 1 6.9035 6.7335 7.2174 25 1 7.9553 4.6676 6.5056 26 6 4.3411 1.4556 3.4894 27 6 4.5300 0.2385 2.8617 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6054 -1.7198 -1.2951 36 1 1.7517 -0.1583 -2.1369 37 1 3.5877 -2.3924 -2.6720 38 1 3.8781 -0.7595 -3.3180 39 1 5.9024 -2.0568 -3.2366 40 1 6.0124 -0.7976 -2.1561 41 1 3.3947 -2.4463 0.1797 42 1 5.8907 1.3262 -0.0268 43 1 5.5446 3.4948 1.0871 44 1 4.3216 4.7245 2.7858 45 1 3.6383 3.8886 4.2009 46 1 4.7728 7.1264 5.5403 47 1 3.9085 1.4917 4.4783 48 1 4.2447 -0.6761 3.3601 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886883957.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:30 Heat of formation + Delta-G solvation = -71.188494 kcal Electronic energy + Delta-G solvation = -28895.782182 eV Core-core repulsion = 25076.652735 eV Total energy + Delta-G solvation = -3819.129447 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.88276 -38.40337 -36.87586 -35.53586 -35.03021 -33.66682 -32.73436 -31.53441 -30.56289 -29.15996 -27.41040 -27.21076 -25.02239 -23.70150 -22.36300 -21.53991 -20.86128 -20.07228 -19.40289 -17.84417 -17.09011 -16.45092 -16.42467 -15.72136 -15.28414 -15.16178 -15.04862 -14.62755 -14.35908 -14.25986 -13.93138 -13.68729 -13.37702 -13.26701 -13.08322 -12.83018 -12.69392 -12.33451 -12.19145 -11.91599 -11.79834 -11.73476 -11.64678 -11.48253 -11.45661 -11.38457 -10.95150 -10.90777 -10.83490 -10.74796 -10.65665 -10.47005 -10.44787 -9.75239 -9.66719 -9.44259 -8.55906 -8.55390 -8.52546 -8.34343 -6.17230 -4.22071 0.69990 1.38865 1.81797 3.24130 3.25294 3.30843 3.35502 3.94631 4.18054 4.20081 4.38182 4.64223 4.65982 4.69783 4.85563 5.01622 5.07790 5.15810 5.19550 5.25006 5.26251 5.31843 5.40742 5.56582 5.56945 5.63052 5.72998 5.74326 5.79747 5.84643 5.88658 5.93585 6.06881 6.11552 6.27138 6.28234 6.35463 6.35681 6.54179 6.86400 6.92144 6.99486 7.20484 7.30223 7.45140 7.56866 7.60245 7.78011 8.13723 8.82847 9.42988 10.92771 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.003399 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.408608 B = 8235.541982 C = 9186.189753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.155 4.155 4 C -0.118 4.118 5 C 0.155 3.845 6 H 0.085 0.915 7 C 0.044 3.956 8 N -0.838 5.838 9 N -1.100 6.100 10 S 2.701 3.299 11 O -0.975 6.975 12 O -0.942 6.942 13 C -0.705 4.705 14 C -0.026 4.026 15 C -0.144 4.144 16 C 0.026 3.974 17 C 0.040 3.960 18 C -0.517 4.517 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.898 3.102 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.272 1.272 26 C -0.144 4.144 27 C -0.021 4.021 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.030 0.970 39 H 0.334 0.666 40 H 0.356 0.644 41 H 0.412 0.588 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.033 0.967 45 H 0.033 0.967 46 H 0.264 0.736 47 H 0.126 0.874 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.344 -14.160 -15.433 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.212 4.212 4 C -0.157 4.157 5 C 0.047 3.953 6 H 0.103 0.897 7 C -0.089 4.089 8 N -0.372 5.372 9 N -0.858 5.858 10 S 2.792 3.208 11 O -0.966 6.966 12 O -0.931 6.931 13 C -0.793 4.793 14 C -0.046 4.046 15 C -0.163 4.163 16 C 0.026 3.974 17 C 0.003 3.997 18 C -0.555 4.555 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.530 5.530 22 Si 0.725 3.275 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.163 4.163 27 C -0.040 4.040 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.146 0.854 40 H 0.174 0.826 41 H 0.246 0.754 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.144 0.856 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.723 -14.835 -14.764 21.983 hybrid contribution 0.208 1.442 0.171 1.467 sum -6.514 -13.393 -14.594 20.852 Atomic orbital electron populations 1.21832 0.95302 1.01376 1.01867 1.21099 0.95500 0.96745 0.98214 1.21978 1.01823 0.95499 1.01916 1.21912 0.93583 1.01338 0.98904 1.20871 0.95614 0.93212 0.85594 0.89674 1.22255 0.90888 1.00223 0.95577 1.58738 1.02293 1.35912 1.40293 1.55444 1.46341 1.40250 1.43743 1.01569 0.73051 0.73471 0.72754 1.93548 1.85897 1.59045 1.58070 1.93496 1.53363 1.86105 1.60113 1.30547 1.19870 1.20126 1.08732 1.20701 0.93859 0.91563 0.98437 1.21201 1.01648 0.97414 0.96072 1.21053 0.86689 0.97739 0.91940 1.18516 0.98176 0.87397 0.95570 1.20978 1.00449 1.05108 1.28983 0.92308 1.24995 0.96498 0.96097 0.96502 1.69942 1.29869 1.11421 1.41778 0.86494 0.82787 0.78595 0.79630 1.20459 1.21042 1.19681 1.21223 1.02777 0.91839 1.00478 1.20737 0.92768 0.98423 0.92119 0.92869 0.92952 0.92546 0.90679 0.92979 0.92303 0.91995 0.91139 0.90718 0.90961 0.95180 0.85420 0.82616 0.75385 0.85615 0.85640 0.94838 0.94839 0.92656 0.85607 0.85541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.19 37.16 0.34 -0.83 16 2 C -0.10 -0.86 2.86 -90.62 -0.26 -1.12 16 3 C -0.16 -1.63 8.95 37.16 0.33 -1.30 16 4 C -0.12 -0.85 4.28 -26.73 -0.11 -0.96 16 5 C 0.16 1.32 2.38 -67.93 -0.16 1.16 16 6 H 0.09 0.78 5.45 -51.93 -0.28 0.50 16 7 C 0.04 0.35 6.48 -3.83 -0.02 0.32 16 8 N -0.84 -8.24 7.45 -10.37 -0.08 -8.32 16 9 N -1.10 -10.77 4.65 -4.89 -0.02 -10.80 16 10 S 2.70 36.78 5.64 -107.50 -0.61 36.17 16 11 O -0.98 -16.34 17.28 -57.17 -0.99 -17.33 16 12 O -0.94 -13.99 13.15 -57.17 -0.75 -14.74 16 13 C -0.70 -10.61 5.68 -39.59 -0.22 -10.83 16 14 C -0.03 -0.40 7.32 -39.59 -0.29 -0.69 16 15 C -0.14 -2.56 9.70 -39.59 -0.38 -2.94 16 16 C 0.03 0.52 5.07 -104.62 -0.53 -0.01 16 17 C 0.04 0.97 5.10 -29.04 -0.15 0.82 16 18 C -0.52 -13.95 9.09 -34.44 -0.31 -14.27 16 19 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 22 Si 0.90 21.10 29.54 -169.99 -5.02 16.07 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 C -0.14 -2.63 9.70 -39.58 -0.38 -3.02 16 27 C -0.02 -0.34 9.52 -39.58 -0.38 -0.71 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.73 7.62 -51.93 -0.40 0.33 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.70 4.62 -51.93 -0.24 0.46 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 39 H 0.33 2.70 9.08 -39.29 -0.36 2.35 16 40 H 0.36 3.80 7.18 -39.29 -0.28 3.51 16 41 H 0.41 3.35 8.84 -34.47 -0.30 3.04 16 42 H 0.13 1.60 7.61 -52.48 -0.40 1.20 16 43 H 0.13 2.14 8.06 -52.48 -0.42 1.71 16 44 H 0.03 0.84 8.09 -51.93 -0.42 0.42 16 45 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 46 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 48 H 0.13 1.81 7.62 -52.49 -0.40 1.41 16 LS Contribution 392.74 15.07 5.92 5.92 Total: -1.00 -32.16 392.74 -11.14 -43.30 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -7.69 Total: 7.20 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: -2.63 Total: -32.79 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.64 Total: -43.81 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -1.74 Total: -32.07 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 36.78 SS G_CDS: -0.61 Total: 36.17 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.16 -11.14 -43.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886883957.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.887 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds