Wall clock time and date at job start Sat Apr 11 2020 06:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 H 1.09002 * 109.46829 * 305.00193 * 5 4 2 7 7 C 1.53001 * 109.47035 * 185.00124 * 5 4 2 8 8 N 1.46894 * 109.47084 * 184.99786 * 7 5 4 9 9 N 1.46501 * 109.47107 * 65.00275 * 5 4 2 10 10 S 1.65601 * 119.99708 * 214.99982 * 9 5 4 11 11 O 1.42103 * 106.40194 * 178.53659 * 10 9 5 12 12 O 1.42102 * 106.40175 * 311.45985 * 10 9 5 13 13 C 1.76204 * 107.21656 * 64.99908 * 10 9 5 14 14 C 1.38229 * 120.00164 * 269.72143 * 13 10 9 15 15 C 1.38230 * 120.00119 * 179.74767 * 14 13 10 16 16 C 1.38234 * 120.00182 * 0.52801 * 15 14 13 17 17 C 1.50698 * 120.00421 * 179.76816 * 16 15 14 18 18 C 1.50697 * 109.47059 * 269.98205 * 17 16 15 19 19 H 1.08004 * 120.00309 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99869 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00149 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00047 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.46960 * 89.99842 * 22 20 18 24 24 H 1.48498 * 109.46792 * 210.00011 * 22 20 18 25 25 H 1.48500 * 109.46797 * 329.99751 * 22 20 18 26 26 C 1.38236 * 119.99569 * 359.74929 * 16 15 14 27 27 C 1.38233 * 119.99754 * 90.00257 * 13 10 9 28 28 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 31 31 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 32 32 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 33 33 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 34 34 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 36 36 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 37 37 H 1.09002 * 109.47233 * 305.00183 * 7 5 4 38 38 H 1.08999 * 109.46982 * 64.99870 * 7 5 4 39 39 H 1.00896 * 111.00187 * 180.02562 * 8 7 5 40 40 H 1.00905 * 111.00402 * 303.95437 * 8 7 5 41 41 H 0.96996 * 119.99924 * 34.99215 * 9 5 4 42 42 H 1.08008 * 119.99828 * 0.02562 * 14 13 10 43 43 H 1.08009 * 120.00223 * 180.29947 * 15 14 13 44 44 H 1.09003 * 109.46863 * 29.98102 * 17 16 15 45 45 H 1.08993 * 109.47139 * 149.98101 * 17 16 15 46 46 H 0.96997 * 120.00316 * 179.97438 * 21 20 18 47 47 H 1.07998 * 119.99859 * 179.97438 * 26 16 15 48 48 H 1.07995 * 120.00583 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.8311 -1.1879 6 1 3.9954 0.1611 -1.0526 7 6 4.0852 -1.4395 -2.4917 8 7 5.5344 -1.6557 -2.3871 9 7 3.9480 -1.6873 -0.0625 10 16 5.3254 -1.3591 0.7962 11 8 5.3979 -2.3348 1.8267 12 8 6.3571 -1.1609 -0.1607 13 6 5.0840 0.1923 1.5961 14 6 5.4540 1.3627 0.9604 15 6 5.2599 2.5800 1.5858 16 6 4.7058 2.6264 2.8514 17 6 4.4989 3.9532 3.5353 18 6 5.7273 4.3029 4.3351 19 1 6.5735 3.6318 4.3467 20 6 5.7715 5.4803 5.0514 21 7 4.7419 6.2983 5.0361 22 14 7.2945 5.9142 6.0422 23 1 8.2352 6.6863 5.1914 24 1 6.9035 6.7335 7.2174 25 1 7.9553 4.6676 6.5056 26 6 4.3411 1.4556 3.4894 27 6 4.5300 0.2385 2.8617 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6054 -1.7198 -1.2951 36 1 1.7517 -0.1583 -2.1369 37 1 3.5877 -2.3924 -2.6720 38 1 3.8781 -0.7595 -3.3180 39 1 5.9024 -2.0568 -3.2366 40 1 6.0124 -0.7976 -2.1561 41 1 3.3947 -2.4463 0.1797 42 1 5.8907 1.3262 -0.0268 43 1 5.5446 3.4948 1.0871 44 1 4.3216 4.7245 2.7858 45 1 3.6383 3.8886 4.2009 46 1 4.7728 7.1264 5.5403 47 1 3.9085 1.4917 4.4783 48 1 4.2447 -0.6761 3.3601 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886883957.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:29 Heat of formation + Delta-G solvation = -93.042930 kcal Electronic energy + Delta-G solvation = -28896.729861 eV Core-core repulsion = 25076.652735 eV Total energy + Delta-G solvation = -3820.077126 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.23324 -39.18238 -38.04159 -36.70344 -35.76914 -35.57356 -33.51106 -33.26991 -31.92451 -29.86781 -29.21091 -27.97094 -25.66050 -25.56227 -23.70401 -22.42034 -22.24965 -20.76286 -20.46850 -18.96435 -18.58430 -18.20628 -17.31026 -16.83348 -16.45302 -16.36018 -15.99692 -15.94779 -15.49090 -15.33807 -15.16785 -14.60380 -14.52640 -14.40840 -14.15773 -13.97942 -13.85131 -13.51901 -13.38372 -13.34440 -13.01518 -12.94171 -12.89447 -12.67261 -12.62371 -12.48638 -12.39661 -12.20968 -12.02571 -11.99542 -11.69201 -11.60086 -11.42599 -11.36831 -11.33003 -10.65483 -10.30189 -9.88827 -9.88245 -9.22032 -8.27145 -6.39787 -0.42250 0.02442 0.44708 1.37713 1.38153 1.49596 2.21742 2.35981 2.69158 2.99094 3.05497 3.47343 3.62052 3.93821 3.99154 4.00320 4.04621 4.17595 4.19585 4.32392 4.40051 4.48456 4.51737 4.59585 4.63301 4.82115 4.86668 4.87965 4.89947 4.94288 5.00497 5.08371 5.13362 5.15714 5.17379 5.26748 5.27660 5.34449 5.38003 5.43836 5.55541 5.59893 5.67351 5.90287 5.96544 6.11543 6.26632 6.57908 6.72233 6.87511 7.29378 8.82833 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.003399 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.408608 B = 8235.541982 C = 9186.189753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.156 4.156 4 C -0.110 4.110 5 C 0.149 3.851 6 H 0.080 0.920 7 C 0.045 3.955 8 N -0.855 5.855 9 N -1.086 6.086 10 S 2.723 3.277 11 O -1.003 7.003 12 O -0.949 6.949 13 C -0.698 4.698 14 C -0.015 4.015 15 C -0.151 4.151 16 C -0.002 4.002 17 C 0.050 3.950 18 C -0.534 4.534 19 H 0.053 0.947 20 C 0.011 3.989 21 N -0.925 5.925 22 Si 0.962 3.038 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.155 4.155 27 C -0.020 4.020 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.047 0.953 39 H 0.342 0.658 40 H 0.350 0.650 41 H 0.424 0.576 42 H 0.156 0.844 43 H 0.127 0.873 44 H 0.013 0.987 45 H 0.009 0.991 46 H 0.267 0.733 47 H 0.122 0.878 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.067 -16.064 -17.284 24.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.214 4.214 4 C -0.149 4.149 5 C 0.042 3.958 6 H 0.098 0.902 7 C -0.088 4.088 8 N -0.390 5.390 9 N -0.847 5.847 10 S 2.811 3.189 11 O -0.994 6.994 12 O -0.938 6.938 13 C -0.784 4.784 14 C -0.034 4.034 15 C -0.169 4.169 16 C -0.002 4.002 17 C 0.013 3.987 18 C -0.571 4.571 19 H 0.071 0.929 20 C -0.188 4.188 21 N -0.565 5.565 22 Si 0.787 3.213 23 H -0.196 1.196 24 H -0.204 1.204 25 H -0.193 1.193 26 C -0.173 4.173 27 C -0.039 4.039 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.155 0.845 40 H 0.167 0.833 41 H 0.260 0.740 42 H 0.174 0.826 43 H 0.145 0.855 44 H 0.031 0.969 45 H 0.028 0.972 46 H 0.076 0.924 47 H 0.140 0.860 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.455 -16.737 -16.611 24.448 hybrid contribution 0.061 1.954 0.638 2.056 sum -6.394 -14.783 -15.973 22.684 Atomic orbital electron populations 1.21814 0.94635 1.02163 1.01612 1.21091 0.96087 0.95495 0.98890 1.21991 1.01275 0.96860 1.01239 1.21876 0.92324 1.02337 0.98405 1.21083 0.96670 0.92736 0.85311 0.90216 1.22283 0.89909 1.01140 0.95421 1.58748 1.03343 1.35733 1.41150 1.55113 1.45576 1.40656 1.43369 1.00923 0.73549 0.72234 0.72164 1.93513 1.86706 1.59601 1.59542 1.93498 1.54484 1.85904 1.59898 1.30989 1.17861 1.21221 1.08299 1.20954 0.92699 0.90439 0.99326 1.21236 1.01657 0.98717 0.95333 1.20715 0.89862 0.96241 0.93367 1.18230 0.96441 0.89436 0.94590 1.21302 1.01177 1.05216 1.29443 0.92871 1.25844 0.99451 0.96004 0.97533 1.70051 1.31786 1.11912 1.42723 0.85484 0.79174 0.78392 0.78268 1.19579 1.20351 1.19310 1.21223 1.03264 0.92242 1.00609 1.20917 0.92314 0.98117 0.92519 0.92071 0.91609 0.93938 0.91672 0.91859 0.94826 0.92792 0.89308 0.89112 0.89930 0.93466 0.84493 0.83310 0.74000 0.82629 0.85546 0.96920 0.97234 0.92409 0.85993 0.83633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.19 71.98 0.66 -1.41 16 2 C -0.10 -1.53 2.86 -10.79 -0.03 -1.57 16 3 C -0.16 -3.20 8.95 71.98 0.64 -2.56 16 4 C -0.11 -1.20 4.28 30.59 0.13 -1.07 16 5 C 0.15 2.09 2.38 44.99 0.11 2.20 16 6 H 0.08 1.24 5.45 -2.39 -0.01 1.22 16 7 C 0.05 0.56 6.48 86.30 0.56 1.12 16 8 N -0.85 -14.43 7.45 -186.73 -1.39 -15.82 16 9 N -1.09 -18.30 4.65 -169.38 -0.79 -19.09 16 10 S 2.72 68.39 5.64 -56.49 -0.32 68.07 16 11 O -1.00 -31.73 17.28 -128.00 -2.21 -33.94 16 12 O -0.95 -25.92 13.15 -128.00 -1.68 -27.61 16 13 C -0.70 -20.10 5.68 22.27 0.13 -19.98 16 14 C -0.02 -0.44 7.32 22.27 0.16 -0.28 16 15 C -0.15 -5.40 9.70 22.27 0.22 -5.19 16 16 C 0.00 -0.06 5.07 -19.87 -0.10 -0.17 16 17 C 0.05 2.56 5.10 29.10 0.15 2.71 16 18 C -0.53 -29.80 9.09 25.60 0.23 -29.57 16 19 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 20 C 0.01 0.60 5.46 84.66 0.46 1.06 16 21 N -0.93 -54.33 13.29 21.45 0.28 -54.04 16 22 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 C -0.15 -5.81 9.70 22.27 0.22 -5.59 16 27 C -0.02 -0.62 9.52 22.27 0.21 -0.41 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 1.16 7.62 -2.39 -0.02 1.14 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 33 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 1.17 4.62 -2.39 -0.01 1.15 16 35 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.34 4.67 9.08 -89.70 -0.81 3.85 16 40 H 0.35 6.58 7.18 -89.69 -0.64 5.94 16 41 H 0.42 5.57 8.84 -96.75 -0.85 4.72 16 42 H 0.16 3.60 7.61 -2.91 -0.02 3.58 16 43 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 44 H 0.01 0.68 8.09 -2.39 -0.02 0.66 16 45 H 0.01 0.51 8.08 -2.39 -0.02 0.49 16 46 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 47 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 48 H 0.15 4.01 7.62 -2.91 -0.02 3.99 16 Total: -1.00 -70.28 392.74 -1.66 -71.95 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: -1.33 Total: 25.38 kcal Atomic # 6 Polarization: -64.44 SS G_CDS: 3.75 Total: -60.69 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -1.89 Total: -88.95 kcal Atomic # 8 Polarization: -57.65 SS G_CDS: -3.90 Total: -61.55 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 68.39 SS G_CDS: -0.32 Total: 68.07 kcal Total: -70.28 -1.66 -71.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886883957.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.094 kcal (2) G-P(sol) polarization free energy of solvation -70.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds