Wall clock time and date at job start Sat Apr 11 2020 06:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40364 * 126.64757 * 2 1 4 4 C 1.35129 * 107.11780 * 180.02562 * 3 2 1 5 5 O 1.33933 * 108.76690 * 359.73680 * 4 3 2 6 6 C 1.34913 * 109.38202 * 0.43726 * 5 4 3 7 7 C 1.46653 * 125.98721 * 179.82760 * 6 5 4 8 8 O 1.21696 * 120.00066 * 179.69408 * 7 6 5 9 9 N 1.34778 * 119.99990 * 359.96215 * 7 6 5 10 10 C 1.46499 * 119.99949 * 179.72413 * 9 7 6 11 11 C 1.53001 * 109.46912 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.43675 * 65.00451 * 11 10 9 13 13 C 1.50816 * 109.43815 * 184.91850 * 11 10 9 14 14 C 1.38925 * 117.73977 * 289.10300 * 13 11 10 15 15 C 1.37954 * 120.48636 * 179.56922 * 14 13 11 16 16 C 1.38266 * 119.72099 * 359.97438 * 15 14 13 17 17 C 1.37917 * 119.82200 * 0.21278 * 16 15 14 18 18 C 1.37583 * 122.41527 * 109.03481 * 13 11 10 19 19 C 1.50600 * 122.84809 * 0.70241 * 18 13 11 20 20 C 1.52786 * 110.85642 * 340.30031 * 19 18 13 21 21 N 1.46683 * 109.44039 * 305.08294 * 11 10 9 22 22 C 1.36944 * 121.34651 * 104.25775 * 21 11 10 23 23 H 1.07999 * 119.99947 * 333.24309 * 22 21 11 24 24 C 1.38813 * 119.99920 * 153.24022 * 22 21 11 25 25 N 1.31619 * 119.99805 * 341.50668 * 24 22 21 26 26 Si 1.86799 * 119.99771 * 161.50265 * 24 22 21 27 27 H 1.48500 * 109.47219 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46873 * 120.00115 * 26 24 22 29 29 H 1.48500 * 109.46948 * 240.00014 * 26 24 22 30 30 H 1.09002 * 109.47064 * 269.96958 * 1 2 3 31 31 H 1.09002 * 109.47252 * 29.97193 * 1 2 3 32 32 H 1.09000 * 109.47289 * 149.97158 * 1 2 3 33 33 H 1.08003 * 126.44046 * 0.04709 * 3 2 1 34 34 H 1.08001 * 125.61639 * 180.02562 * 4 3 2 35 35 H 0.97002 * 119.99929 * 359.73402 * 9 7 6 36 36 H 1.08998 * 109.47729 * 300.00320 * 10 9 7 37 37 H 1.09000 * 109.47479 * 60.00597 * 10 9 7 38 38 H 1.07999 * 119.76922 * 359.56751 * 14 13 11 39 39 H 1.08007 * 120.14265 * 180.02562 * 15 14 13 40 40 H 1.07996 * 120.09281 * 180.18960 * 16 15 14 41 41 H 1.07995 * 119.70597 * 179.97438 * 17 16 15 42 42 H 1.09000 * 109.20237 * 219.94319 * 19 18 13 43 43 H 1.09005 * 109.16544 * 100.62795 * 19 18 13 44 44 H 1.09003 * 109.77801 * 287.84285 * 20 19 18 45 45 H 1.08998 * 109.82799 * 167.06606 * 20 19 18 46 46 H 0.97001 * 119.99718 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 -0.0006 5 8 3.6005 -0.6648 0.0049 6 6 2.3220 -1.0955 -0.0006 7 6 1.8843 -2.4952 -0.0009 8 8 0.6968 -2.7614 -0.0006 9 7 2.7971 -3.4868 0.0040 10 6 2.3598 -4.8850 0.0098 11 6 3.5843 -5.8023 0.0152 12 1 4.1341 -5.6679 0.9468 13 6 3.1366 -7.2378 -0.1007 14 6 2.5001 -7.8071 0.9951 15 6 2.0592 -9.1134 0.9476 16 6 2.2522 -9.8608 -0.1996 17 6 2.8876 -9.2974 -1.2864 18 6 3.3364 -7.9829 -1.2398 19 6 4.0303 -7.4387 -2.4607 20 6 4.0255 -5.9109 -2.4534 21 7 4.4529 -5.4638 -1.1173 22 6 5.6144 -4.7606 -0.9390 23 1 5.7146 -4.0870 -0.1009 24 6 6.6630 -4.9139 -1.8356 25 7 6.7053 -5.9661 -2.6252 26 14 8.0140 -3.6267 -1.9215 27 1 7.7357 -2.5505 -0.9369 28 1 9.3205 -4.2587 -1.6073 29 1 8.0601 -3.0479 -3.2883 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3634 -0.8897 -0.5143 33 1 2.0306 2.1595 0.0007 34 1 4.5046 1.2916 -0.0003 35 1 3.7436 -3.2746 0.0038 36 1 1.7604 -5.0746 0.9002 37 1 1.7616 -5.0823 -0.8797 38 1 2.3491 -7.2229 1.8908 39 1 1.5646 -9.5504 1.8026 40 1 1.9068 -10.8830 -0.2444 41 1 3.0377 -9.8830 -2.1813 42 1 3.5164 -7.7946 -3.3536 43 1 5.0608 -7.7939 -2.4747 44 1 3.0202 -5.5442 -2.6610 45 1 4.7178 -5.5354 -3.2069 46 1 7.4382 -6.0733 -3.2515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948890019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:56 Heat of formation + Delta-G solvation = 24.598786 kcal Electronic energy + Delta-G solvation = -29916.233531 eV Core-core repulsion = 25965.813781 eV Total energy + Delta-G solvation = -3950.419750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.57961 -39.61265 -38.81245 -36.32956 -34.50025 -33.74039 -32.34110 -32.04013 -30.37527 -29.89509 -28.72437 -27.76050 -26.62283 -24.34517 -22.82681 -22.46537 -21.96027 -21.34839 -20.83446 -19.70702 -18.68432 -17.91854 -16.76447 -16.26327 -16.01018 -15.79293 -15.38930 -15.37536 -14.59747 -14.49947 -14.18942 -14.05556 -13.73503 -13.46976 -13.21883 -13.03940 -12.93089 -12.65760 -12.57860 -12.43912 -12.39360 -12.22033 -11.72601 -11.71015 -11.26791 -11.12865 -11.10726 -10.85686 -10.72117 -10.43550 -10.11654 -9.90609 -9.81261 -9.65067 -9.53830 -8.76848 -8.61808 -8.36481 -8.25445 -7.92624 -6.85684 -5.94199 -3.37966 1.22863 1.86404 1.94345 2.40060 2.89090 3.28900 3.37796 3.38594 3.45747 3.64784 4.28964 4.35242 4.78200 4.82967 5.08160 5.22039 5.22976 5.36188 5.41608 5.44446 5.48154 5.56786 5.58273 5.75495 5.76536 5.84502 5.87606 5.96358 6.04794 6.09576 6.17924 6.22464 6.36627 6.43282 6.46436 6.53997 6.58239 6.69772 6.75547 6.83598 6.95574 6.99381 7.02205 7.33562 7.36368 7.52677 7.60511 7.67866 7.96644 8.25926 8.49291 9.02935 9.64924 10.23503 11.13067 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009154 B = 0.004583 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.886813 B = 6108.430584 C = 8586.293661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.099 4.099 3 C -0.229 4.229 4 C -0.008 4.008 5 O -0.155 6.155 6 C -0.073 4.073 7 C 0.595 3.405 8 O -0.536 6.536 9 N -0.692 5.692 10 C 0.113 3.887 11 C 0.193 3.807 12 H 0.078 0.922 13 C -0.080 4.080 14 C -0.118 4.118 15 C -0.139 4.139 16 C -0.128 4.128 17 C -0.134 4.134 18 C -0.038 4.038 19 C -0.097 4.097 20 C 0.165 3.835 21 N -0.579 5.579 22 C -0.258 4.258 23 H 0.069 0.931 24 C 0.011 3.989 25 N -0.890 5.890 26 Si 0.901 3.099 27 H -0.276 1.276 28 H -0.291 1.291 29 H -0.289 1.289 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.152 0.848 34 H 0.207 0.793 35 H 0.416 0.584 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.048 0.952 43 H 0.102 0.898 44 H 0.007 0.993 45 H 0.095 0.905 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.816 5.338 4.630 10.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.102 4.102 3 C -0.248 4.248 4 C -0.078 4.078 5 O -0.050 6.050 6 C -0.125 4.125 7 C 0.380 3.620 8 O -0.416 6.416 9 N -0.343 5.343 10 C -0.013 4.013 11 C 0.084 3.916 12 H 0.096 0.904 13 C -0.082 4.082 14 C -0.137 4.137 15 C -0.157 4.157 16 C -0.146 4.146 17 C -0.152 4.152 18 C -0.039 4.039 19 C -0.135 4.135 20 C 0.039 3.961 21 N -0.300 5.300 22 C -0.387 4.387 23 H 0.086 0.914 24 C -0.189 4.189 25 N -0.533 5.533 26 Si 0.731 3.269 27 H -0.201 1.201 28 H -0.218 1.218 29 H -0.215 1.215 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.170 0.830 34 H 0.224 0.776 35 H 0.254 0.746 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.067 0.933 43 H 0.120 0.880 44 H 0.025 0.975 45 H 0.113 0.887 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.207 4.875 4.495 10.551 hybrid contribution 1.303 0.735 -0.095 1.500 sum -6.903 5.611 4.401 9.925 Atomic orbital electron populations 1.20374 0.88446 1.03364 1.02568 1.20577 0.97519 0.91002 1.01144 1.21679 0.92487 0.99922 1.10717 1.24333 0.99825 0.80915 1.02728 1.84153 1.28353 1.22434 1.70047 1.22056 0.81395 0.95117 1.13923 1.16563 0.85852 0.81904 0.77639 1.90796 1.15860 1.82477 1.52467 1.45885 1.10769 1.05929 1.71674 1.21987 0.98137 0.79964 1.01224 1.19613 0.90554 0.87668 0.93791 0.90427 1.20059 0.97955 0.96827 0.93319 1.21122 0.99064 0.95353 0.98170 1.20879 1.02124 0.94779 0.97957 1.20918 1.00483 0.99239 0.93949 1.21197 1.00169 0.95301 0.98554 1.19838 0.95156 0.92928 0.95946 1.20999 1.00998 0.99605 0.91894 1.20798 0.95859 0.90624 0.88788 1.44145 1.22042 1.63596 1.00214 1.19069 0.90805 1.16750 1.12100 0.91382 1.24991 0.96902 0.96694 1.00282 1.69978 1.32179 1.25711 1.25469 0.86251 0.81654 0.81358 0.77663 1.20080 1.21754 1.21517 0.91149 0.91858 0.89480 0.82987 0.77635 0.74614 0.92052 0.91767 0.86740 0.86951 0.87056 0.86892 0.93324 0.88036 0.97526 0.88716 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 9.81 36.00 0.35 -0.80 16 2 C -0.10 -1.43 6.20 -104.44 -0.65 -2.08 16 3 C -0.23 -2.70 10.83 -39.89 -0.43 -3.13 16 4 C -0.01 -0.09 12.08 29.63 0.36 0.27 16 5 O -0.16 -2.43 10.40 4.99 0.05 -2.38 16 6 C -0.07 -1.20 7.13 -36.80 -0.26 -1.47 16 7 C 0.59 10.90 7.79 -12.86 -0.10 10.80 16 8 O -0.54 -10.60 14.74 5.19 0.08 -10.52 16 9 N -0.69 -12.70 5.38 -61.63 -0.33 -13.03 16 10 C 0.11 2.06 5.01 -4.04 -0.02 2.04 16 11 C 0.19 3.77 2.50 -68.93 -0.17 3.59 16 12 H 0.08 1.53 7.98 -51.93 -0.41 1.11 16 13 C -0.08 -1.51 5.17 -104.55 -0.54 -2.05 16 14 C -0.12 -1.94 9.34 -39.43 -0.37 -2.31 16 15 C -0.14 -2.08 10.05 -39.68 -0.40 -2.48 16 16 C -0.13 -1.93 10.05 -39.69 -0.40 -2.33 16 17 C -0.13 -2.27 9.59 -39.42 -0.38 -2.65 16 18 C -0.04 -0.75 5.76 -104.64 -0.60 -1.35 16 19 C -0.10 -2.00 5.77 -28.04 -0.16 -2.16 16 20 C 0.16 3.68 5.46 -3.75 -0.02 3.66 16 21 N -0.58 -13.01 2.30 -166.32 -0.38 -13.39 16 22 C -0.26 -6.31 8.72 -15.06 -0.13 -6.44 16 23 H 0.07 1.62 7.29 -52.49 -0.38 1.24 16 24 C 0.01 0.29 4.93 -17.43 -0.09 0.20 16 25 N -0.89 -23.37 10.13 55.49 0.56 -22.81 16 26 Si 0.90 20.25 29.59 -169.99 -5.03 15.22 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.09 1.27 6.45 -51.93 -0.33 0.93 16 33 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 34 H 0.21 1.56 8.06 -52.49 -0.42 1.13 16 35 H 0.42 7.88 6.44 -40.82 -0.26 7.62 16 36 H 0.06 1.04 8.03 -51.93 -0.42 0.63 16 37 H 0.06 1.27 7.54 -51.93 -0.39 0.87 16 38 H 0.11 1.64 8.05 -52.49 -0.42 1.22 16 39 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 40 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.11 1.71 8.05 -52.49 -0.42 1.29 16 42 H 0.05 0.91 8.11 -51.93 -0.42 0.48 16 43 H 0.10 2.39 7.11 -51.93 -0.37 2.02 16 44 H 0.01 0.15 7.48 -51.93 -0.39 -0.24 16 45 H 0.09 2.36 5.95 -51.93 -0.31 2.05 16 46 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -28.45 375.35 -9.62 -38.07 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -6.21 Total: 11.86 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -4.01 Total: -8.68 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -0.15 Total: -49.23 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.13 Total: -12.90 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.45 -9.62 -38.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948890019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.664 kcal (2) G-P(sol) polarization free energy of solvation -28.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds