Wall clock time and date at job start Sat Apr 11 2020 06:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40364 * 126.64757 * 2 1 4 4 C 1.35129 * 107.11780 * 180.02562 * 3 2 1 5 5 O 1.33933 * 108.76690 * 359.73680 * 4 3 2 6 6 C 1.34913 * 109.38202 * 0.43726 * 5 4 3 7 7 C 1.46653 * 125.98721 * 179.82760 * 6 5 4 8 8 O 1.21696 * 120.00066 * 179.69408 * 7 6 5 9 9 N 1.34778 * 119.99990 * 359.96215 * 7 6 5 10 10 C 1.46499 * 119.99949 * 179.72413 * 9 7 6 11 11 C 1.53001 * 109.46912 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.43675 * 65.00451 * 11 10 9 13 13 C 1.50816 * 109.43815 * 184.91850 * 11 10 9 14 14 C 1.38925 * 117.73977 * 289.10300 * 13 11 10 15 15 C 1.37954 * 120.48636 * 179.56922 * 14 13 11 16 16 C 1.38266 * 119.72099 * 359.97438 * 15 14 13 17 17 C 1.37917 * 119.82200 * 0.21278 * 16 15 14 18 18 C 1.37583 * 122.41527 * 109.03481 * 13 11 10 19 19 C 1.50600 * 122.84809 * 0.70241 * 18 13 11 20 20 C 1.52786 * 110.85642 * 340.30031 * 19 18 13 21 21 N 1.46683 * 109.44039 * 305.08294 * 11 10 9 22 22 C 1.36944 * 121.34651 * 104.25775 * 21 11 10 23 23 H 1.07999 * 119.99947 * 333.24309 * 22 21 11 24 24 C 1.38813 * 119.99920 * 153.24022 * 22 21 11 25 25 N 1.31619 * 119.99805 * 341.50668 * 24 22 21 26 26 Si 1.86799 * 119.99771 * 161.50265 * 24 22 21 27 27 H 1.48500 * 109.47219 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46873 * 120.00115 * 26 24 22 29 29 H 1.48500 * 109.46948 * 240.00014 * 26 24 22 30 30 H 1.09002 * 109.47064 * 269.96958 * 1 2 3 31 31 H 1.09002 * 109.47252 * 29.97193 * 1 2 3 32 32 H 1.09000 * 109.47289 * 149.97158 * 1 2 3 33 33 H 1.08003 * 126.44046 * 0.04709 * 3 2 1 34 34 H 1.08001 * 125.61639 * 180.02562 * 4 3 2 35 35 H 0.97002 * 119.99929 * 359.73402 * 9 7 6 36 36 H 1.08998 * 109.47729 * 300.00320 * 10 9 7 37 37 H 1.09000 * 109.47479 * 60.00597 * 10 9 7 38 38 H 1.07999 * 119.76922 * 359.56751 * 14 13 11 39 39 H 1.08007 * 120.14265 * 180.02562 * 15 14 13 40 40 H 1.07996 * 120.09281 * 180.18960 * 16 15 14 41 41 H 1.07995 * 119.70597 * 179.97438 * 17 16 15 42 42 H 1.09000 * 109.20237 * 219.94319 * 19 18 13 43 43 H 1.09005 * 109.16544 * 100.62795 * 19 18 13 44 44 H 1.09003 * 109.77801 * 287.84285 * 20 19 18 45 45 H 1.08998 * 109.82799 * 167.06606 * 20 19 18 46 46 H 0.97001 * 119.99718 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 -0.0006 5 8 3.6005 -0.6648 0.0049 6 6 2.3220 -1.0955 -0.0006 7 6 1.8843 -2.4952 -0.0009 8 8 0.6968 -2.7614 -0.0006 9 7 2.7971 -3.4868 0.0040 10 6 2.3598 -4.8850 0.0098 11 6 3.5843 -5.8023 0.0152 12 1 4.1341 -5.6679 0.9468 13 6 3.1366 -7.2378 -0.1007 14 6 2.5001 -7.8071 0.9951 15 6 2.0592 -9.1134 0.9476 16 6 2.2522 -9.8608 -0.1996 17 6 2.8876 -9.2974 -1.2864 18 6 3.3364 -7.9829 -1.2398 19 6 4.0303 -7.4387 -2.4607 20 6 4.0255 -5.9109 -2.4534 21 7 4.4529 -5.4638 -1.1173 22 6 5.6144 -4.7606 -0.9390 23 1 5.7146 -4.0870 -0.1009 24 6 6.6630 -4.9139 -1.8356 25 7 6.7053 -5.9661 -2.6252 26 14 8.0140 -3.6267 -1.9215 27 1 7.7357 -2.5505 -0.9369 28 1 9.3205 -4.2587 -1.6073 29 1 8.0601 -3.0479 -3.2883 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3634 -0.8897 -0.5143 33 1 2.0306 2.1595 0.0007 34 1 4.5046 1.2916 -0.0003 35 1 3.7436 -3.2746 0.0038 36 1 1.7604 -5.0746 0.9002 37 1 1.7616 -5.0823 -0.8797 38 1 2.3491 -7.2229 1.8908 39 1 1.5646 -9.5504 1.8026 40 1 1.9068 -10.8830 -0.2444 41 1 3.0377 -9.8830 -2.1813 42 1 3.5164 -7.7946 -3.3536 43 1 5.0608 -7.7939 -2.4747 44 1 3.0202 -5.5442 -2.6610 45 1 4.7178 -5.5354 -3.2069 46 1 7.4382 -6.0733 -3.2515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948890019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:55 Heat of formation + Delta-G solvation = 9.816501 kcal Electronic energy + Delta-G solvation = -29916.874539 eV Core-core repulsion = 25965.813781 eV Total energy + Delta-G solvation = -3951.060758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.64990 -41.05438 -40.20657 -37.86112 -35.92560 -34.95113 -34.04418 -33.48988 -31.53095 -31.42920 -30.11996 -29.06677 -28.03119 -25.97417 -24.28408 -23.93410 -23.29560 -22.66326 -22.02529 -20.99338 -20.20729 -19.23061 -18.41864 -17.47301 -17.38978 -17.08280 -16.90202 -16.73152 -16.12954 -15.90750 -15.72147 -15.39468 -15.23823 -15.02818 -14.45635 -14.20737 -13.99882 -13.98701 -13.88734 -13.82351 -13.74355 -13.49733 -13.31964 -12.92801 -12.77068 -12.75121 -12.73947 -12.56919 -12.24056 -12.06085 -11.80629 -11.57230 -11.27902 -11.14651 -10.64855 -10.50775 -10.17166 -9.56521 -9.52732 -9.31578 -8.69728 -7.85745 -5.30630 0.06500 0.56767 0.62377 1.43173 1.47346 1.51299 1.59409 1.79420 2.12451 2.34292 2.50704 2.97515 3.30667 3.54113 3.77109 3.84795 3.95713 3.96415 4.07100 4.15620 4.30697 4.34710 4.39017 4.55262 4.57329 4.60554 4.64133 4.76782 4.77653 4.78560 4.81026 4.96269 4.97317 5.08378 5.12460 5.19845 5.23833 5.25710 5.36849 5.51648 5.53650 5.60999 5.68812 5.70611 5.83887 5.92773 5.99948 6.25880 6.38051 6.53588 7.05044 7.14107 7.79460 8.37066 9.19740 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009154 B = 0.004583 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.886813 B = 6108.430584 C = 8586.293661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.095 4.095 3 C -0.230 4.230 4 C 0.004 3.996 5 O -0.178 6.178 6 C -0.119 4.119 7 C 0.592 3.408 8 O -0.560 6.560 9 N -0.697 5.697 10 C 0.127 3.873 11 C 0.197 3.803 12 H 0.074 0.926 13 C -0.102 4.102 14 C -0.123 4.123 15 C -0.131 4.131 16 C -0.122 4.122 17 C -0.141 4.141 18 C -0.070 4.070 19 C -0.084 4.084 20 C 0.170 3.830 21 N -0.589 5.589 22 C -0.257 4.257 23 H 0.072 0.928 24 C -0.038 4.038 25 N -0.915 5.915 26 Si 0.957 3.043 27 H -0.263 1.263 28 H -0.298 1.298 29 H -0.296 1.296 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.188 0.812 34 H 0.250 0.750 35 H 0.412 0.588 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.134 0.866 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.126 0.874 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.005 0.995 45 H 0.065 0.935 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.840 6.245 6.315 12.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.248 4.248 4 C -0.065 4.065 5 O -0.074 6.074 6 C -0.171 4.171 7 C 0.380 3.620 8 O -0.442 6.442 9 N -0.346 5.346 10 C 0.001 3.999 11 C 0.089 3.911 12 H 0.092 0.908 13 C -0.104 4.104 14 C -0.141 4.141 15 C -0.149 4.149 16 C -0.140 4.140 17 C -0.159 4.159 18 C -0.070 4.070 19 C -0.123 4.123 20 C 0.045 3.955 21 N -0.310 5.310 22 C -0.387 4.387 23 H 0.090 0.910 24 C -0.235 4.235 25 N -0.560 5.560 26 Si 0.786 3.214 27 H -0.187 1.187 28 H -0.225 1.225 29 H -0.223 1.223 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.206 0.794 34 H 0.266 0.734 35 H 0.249 0.751 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.151 0.849 39 H 0.167 0.833 40 H 0.164 0.836 41 H 0.144 0.856 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.023 0.977 45 H 0.083 0.917 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.254 5.786 6.203 12.554 hybrid contribution 1.549 0.512 -0.568 1.727 sum -7.706 6.298 5.635 11.437 Atomic orbital electron populations 1.20413 0.87554 1.03536 1.03186 1.21028 0.98409 0.91377 0.98948 1.22081 0.91809 1.00777 1.10141 1.25334 1.01705 0.79684 0.99819 1.84126 1.28006 1.24472 1.70795 1.21797 0.82476 0.94605 1.18203 1.16842 0.85506 0.82817 0.76837 1.90763 1.16553 1.83212 1.53665 1.45899 1.10570 1.06047 1.72089 1.21786 0.97310 0.79944 1.00875 1.19634 0.90260 0.88896 0.92323 0.90832 1.20070 0.99640 0.96269 0.94436 1.21356 0.98513 0.96435 0.97840 1.21330 1.00674 0.93903 0.98975 1.21338 0.98880 1.00755 0.93014 1.21387 1.00127 0.94365 1.00029 1.19829 0.97053 0.94541 0.95606 1.20733 0.99558 0.98158 0.93808 1.20609 0.94641 0.91946 0.88318 1.44189 1.21923 1.63814 1.01042 1.19328 0.91091 1.16540 1.11711 0.91008 1.25632 0.98942 0.98234 1.00709 1.70130 1.32590 1.27057 1.26223 0.85363 0.79056 0.79692 0.77260 1.18719 1.22525 1.22281 0.90209 0.89007 0.91912 0.79439 0.73440 0.75100 0.90618 0.93685 0.84852 0.83314 0.83554 0.85646 0.92080 0.91371 0.97691 0.91684 0.94263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.18 9.81 71.23 0.70 -1.48 16 2 C -0.09 -2.60 6.20 -19.74 -0.12 -2.72 16 3 C -0.23 -4.70 10.83 22.07 0.24 -4.46 16 4 C 0.00 0.08 12.08 67.10 0.81 0.89 16 5 O -0.18 -5.47 10.40 -5.06 -0.05 -5.52 16 6 C -0.12 -3.98 7.13 24.07 0.17 -3.81 16 7 C 0.59 22.41 7.79 86.44 0.67 23.09 16 8 O -0.56 -22.86 14.74 -4.34 -0.06 -22.92 16 9 N -0.70 -26.47 5.38 -467.11 -2.51 -28.99 16 10 C 0.13 4.76 5.01 86.38 0.43 5.19 16 11 C 0.20 7.89 2.50 44.25 0.11 8.00 16 12 H 0.07 2.96 7.98 -2.39 -0.02 2.94 16 13 C -0.10 -3.88 5.17 -19.82 -0.10 -3.98 16 14 C -0.12 -3.80 9.34 22.37 0.21 -3.59 16 15 C -0.13 -3.46 10.05 22.21 0.22 -3.24 16 16 C -0.12 -3.30 10.05 22.20 0.22 -3.08 16 17 C -0.14 -4.61 9.59 22.37 0.21 -4.39 16 18 C -0.07 -2.75 5.76 -19.87 -0.11 -2.86 16 19 C -0.08 -3.65 5.77 29.75 0.17 -3.48 16 20 C 0.17 8.06 5.46 86.17 0.47 8.53 16 21 N -0.59 -27.52 2.30 -680.10 -1.56 -29.08 16 22 C -0.26 -12.96 8.72 84.03 0.73 -12.22 16 23 H 0.07 3.49 7.29 -2.91 -0.02 3.47 16 24 C -0.04 -1.99 4.93 84.86 0.42 -1.57 16 25 N -0.92 -50.30 10.13 21.65 0.22 -50.08 16 26 Si 0.96 42.65 29.59 68.60 2.03 44.68 16 27 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 28 H -0.30 -13.52 7.11 99.48 0.71 -12.82 16 29 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.84 6.45 -2.39 -0.02 1.82 16 33 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.25 2.69 8.06 -2.91 -0.02 2.67 16 35 H 0.41 16.21 6.44 -92.71 -0.60 15.61 16 36 H 0.08 2.59 8.03 -2.39 -0.02 2.57 16 37 H 0.04 1.85 7.54 -2.39 -0.02 1.83 16 38 H 0.13 3.53 8.05 -2.91 -0.02 3.50 16 39 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 40 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 41 H 0.13 3.67 8.05 -2.91 -0.02 3.64 16 42 H 0.06 2.38 8.11 -2.39 -0.02 2.36 16 43 H 0.07 3.40 7.11 -2.38 -0.02 3.39 16 44 H 0.01 0.24 7.48 -2.39 -0.02 0.22 16 45 H 0.06 3.45 5.95 -2.39 -0.01 3.44 16 46 H 0.25 13.40 8.31 -92.71 -0.77 12.63 16 Total: -1.00 -65.26 375.35 3.93 -61.33 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: 0.41 Total: 35.78 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 5.46 Total: -5.19 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -3.86 Total: -108.15 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.12 Total: -28.45 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -65.26 3.93 -61.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948890019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.150 kcal (2) G-P(sol) polarization free energy of solvation -65.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds