Wall clock time and date at job start Sat Apr 11 2020 06:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34174 * 127.02564 * 2 1 4 4 O 1.34209 * 109.12748 * 180.26705 * 3 2 1 5 5 C 1.33656 * 110.90760 * 359.74480 * 4 3 2 6 6 C 1.50691 * 125.80176 * 179.97438 * 5 4 3 7 7 C 1.36415 * 108.39237 * 0.02562 * 5 4 3 8 8 C 1.47388 * 127.18656 * 179.97438 * 7 5 4 9 9 O 1.21610 * 119.99988 * 90.02706 * 8 7 5 10 10 N 1.34778 * 120.00007 * 270.02236 * 8 7 5 11 11 C 1.46498 * 119.99750 * 180.02562 * 10 8 7 12 12 H 1.09003 * 110.72769 * 31.59862 * 11 10 8 13 13 C 1.54342 * 110.82567 * 267.97367 * 11 10 8 14 14 C 1.51377 * 105.16903 * 268.12316 * 13 11 10 15 15 C 1.38504 * 130.38901 * 163.09338 * 14 13 11 16 16 C 1.38106 * 120.20820 * 180.15064 * 15 14 13 17 17 C 1.38245 * 119.93707 * 359.54342 * 16 15 14 18 18 C 1.38105 * 119.93686 * 0.22876 * 17 16 15 19 19 C 1.38215 * 109.75709 * 342.81172 * 14 13 11 20 20 C 1.51369 * 109.76229 * 359.97438 * 19 14 13 21 21 H 1.08999 * 110.30349 * 136.11272 * 20 19 14 22 22 N 1.46494 * 110.30358 * 258.16786 * 20 19 14 23 23 C 1.36937 * 120.00225 * 273.54767 * 22 20 19 24 24 H 1.07997 * 119.99996 * 359.97438 * 23 22 20 25 25 C 1.38814 * 120.00020 * 179.97438 * 23 22 20 26 26 N 1.31616 * 119.99843 * 179.97438 * 25 23 22 27 27 Si 1.86803 * 119.99973 * 0.02562 * 25 23 22 28 28 H 1.48494 * 109.47282 * 89.99798 * 27 25 23 29 29 H 1.48506 * 109.46681 * 210.00012 * 27 25 23 30 30 H 1.48503 * 109.47031 * 329.99619 * 27 25 23 31 31 H 1.08998 * 109.47466 * 270.13526 * 1 2 3 32 32 H 1.09001 * 109.47456 * 30.13360 * 1 2 3 33 33 H 1.09001 * 109.47371 * 150.13525 * 1 2 3 34 34 H 1.08010 * 125.43591 * 0.02562 * 3 2 1 35 35 H 1.09003 * 109.47556 * 270.00615 * 6 5 4 36 36 H 1.09001 * 109.47285 * 30.00072 * 6 5 4 37 37 H 1.09002 * 109.46884 * 150.00428 * 6 5 4 38 38 H 0.96998 * 119.99790 * 0.02562 * 10 8 7 39 39 H 1.08992 * 110.30704 * 149.19930 * 13 11 10 40 40 H 1.09003 * 110.30230 * 27.04537 * 13 11 10 41 41 H 1.07993 * 119.89103 * 359.69693 * 15 14 13 42 42 H 1.08002 * 120.02529 * 179.75354 * 16 15 14 43 43 H 1.08005 * 120.02867 * 180.20141 * 17 16 15 44 44 H 1.08001 * 119.88993 * 180.02562 * 18 17 16 45 45 H 0.97010 * 119.99885 * 93.54758 * 22 20 19 46 46 H 0.97004 * 120.00181 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5921 0.6588 -0.0059 5 6 3.6623 -0.6760 -0.0044 6 6 4.9290 -1.4921 -0.0102 7 6 2.3922 -1.1738 0.0022 8 6 1.9913 -2.5921 0.0056 9 8 1.8305 -3.1760 1.0601 10 7 1.8028 -3.2418 -1.1601 11 6 1.4038 -4.6514 -1.1567 12 1 0.7884 -4.8761 -0.2855 13 6 2.6412 -5.5721 -1.2119 14 6 2.8744 -5.8345 -2.6844 15 6 3.9915 -6.3204 -3.3435 16 6 3.9755 -6.4766 -4.7156 17 6 2.8381 -6.1563 -5.4332 18 6 1.7217 -5.6761 -4.7772 19 6 1.7373 -5.5142 -3.4018 20 6 0.6619 -5.0153 -2.4606 21 1 0.1746 -4.1336 -2.8767 22 7 -0.3239 -6.0696 -2.2106 23 6 -1.3832 -6.2327 -3.0631 24 1 -1.4920 -5.5838 -3.9194 25 6 -2.3170 -7.2321 -2.8264 26 7 -3.3354 -7.3885 -3.6455 27 14 -2.1292 -8.3541 -1.3448 28 1 -2.8370 -7.7611 -0.1819 29 1 -2.7129 -9.6842 -1.6540 30 1 -0.6882 -8.5092 -1.0208 31 1 -0.3634 0.0024 1.0276 32 1 -0.3634 0.8888 -0.5159 33 1 -0.3634 -0.8912 -0.5117 34 1 1.9895 2.1011 0.0004 35 1 5.2289 -1.6903 -1.0392 36 1 5.7193 -0.9400 0.4985 37 1 4.7552 -2.4363 0.5059 38 1 1.9314 -2.7761 -2.0012 39 1 2.4409 -6.5068 -0.6883 40 1 3.5053 -5.0710 -0.7755 41 1 4.8803 -6.5709 -2.7835 42 1 4.8496 -6.8520 -5.2270 43 1 2.8229 -6.2810 -6.5059 44 1 0.8335 -5.4265 -5.3385 45 1 -0.2264 -6.6523 -1.4412 46 1 -3.9878 -8.0871 -3.4804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960263895.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:23 Heat of formation + Delta-G solvation = 18.617173 kcal Electronic energy + Delta-G solvation = -29468.514230 eV Core-core repulsion = 25517.835098 eV Total energy + Delta-G solvation = -3950.679132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.71648 -40.30183 -38.89649 -36.26210 -34.17208 -34.02795 -32.85297 -32.36453 -31.32445 -30.15087 -28.61433 -27.78001 -26.62460 -26.37312 -23.83277 -22.63387 -21.90283 -20.65043 -20.27928 -20.08733 -19.67105 -18.07233 -17.61473 -16.63578 -16.21078 -15.92429 -15.73371 -15.16061 -14.73669 -14.56107 -14.42081 -14.31722 -13.91666 -13.63642 -13.44157 -13.42869 -13.11992 -13.04124 -12.95157 -12.84671 -12.82660 -12.64058 -12.50753 -11.81434 -11.64888 -11.48908 -11.30644 -11.18041 -10.90316 -10.72327 -10.46738 -10.21054 -10.07969 -9.67767 -9.55229 -9.12255 -8.97861 -8.65636 -8.41128 -8.20407 -7.41762 -5.85907 -3.23269 1.44045 1.73574 1.79958 2.06799 2.53899 2.65330 3.26643 3.34994 3.37935 3.42902 4.14118 4.27028 4.52503 4.57915 4.69201 4.78308 4.91207 4.94794 5.09903 5.16148 5.23766 5.33768 5.35323 5.38982 5.41892 5.44140 5.46662 5.53092 5.59047 5.69306 5.72847 5.77171 5.85694 5.94843 5.96883 6.05112 6.13888 6.23954 6.25344 6.39691 6.51494 6.64782 6.80542 6.87909 6.90441 7.13148 7.39737 7.54830 7.86084 8.23672 8.31526 9.07271 9.79946 9.97144 11.31434 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010182 B = 0.003845 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.370907 B = 7281.252622 C = 8807.139132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.144 4.144 3 C -0.044 4.044 4 O -0.174 6.174 5 C 0.042 3.958 6 C -0.080 4.080 7 C -0.226 4.226 8 C 0.594 3.406 9 O -0.532 6.532 10 N -0.702 5.702 11 C 0.132 3.868 12 H 0.109 0.891 13 C -0.087 4.087 14 C -0.099 4.099 15 C -0.115 4.115 16 C -0.129 4.129 17 C -0.126 4.126 18 C -0.084 4.084 19 C -0.095 4.095 20 C 0.213 3.787 21 H 0.071 0.929 22 N -0.728 5.728 23 C -0.248 4.248 24 H 0.093 0.907 25 C 0.013 3.987 26 N -0.928 5.928 27 Si 0.880 3.120 28 H -0.281 1.281 29 H -0.289 1.289 30 H -0.276 1.276 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.207 0.793 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.403 0.597 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.365 0.635 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.028 14.313 3.518 22.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C -0.110 4.110 4 O -0.071 6.071 5 C -0.010 4.010 6 C -0.137 4.137 7 C -0.230 4.230 8 C 0.379 3.621 9 O -0.408 6.408 10 N -0.352 5.352 11 C 0.027 3.973 12 H 0.127 0.873 13 C -0.125 4.125 14 C -0.100 4.100 15 C -0.133 4.133 16 C -0.148 4.148 17 C -0.144 4.144 18 C -0.103 4.103 19 C -0.098 4.098 20 C 0.102 3.898 21 H 0.089 0.911 22 N -0.369 5.369 23 C -0.377 4.377 24 H 0.110 0.890 25 C -0.184 4.184 26 N -0.574 5.574 27 Si 0.709 3.291 28 H -0.208 1.208 29 H -0.216 1.216 30 H -0.202 1.202 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.223 0.777 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.237 0.763 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.128 0.872 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.198 0.802 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.897 14.070 4.110 22.368 hybrid contribution -0.106 -0.906 0.435 1.011 sum 16.791 13.163 4.545 21.814 Atomic orbital electron populations 1.20229 0.88420 1.03200 1.02710 1.21383 0.96942 0.90474 1.05737 1.23605 0.79570 0.99516 1.08293 1.83706 1.29633 1.21858 1.71886 1.22495 0.95988 0.80816 1.01699 1.20443 0.91138 0.97928 1.04157 1.21046 0.93189 0.94042 1.14768 1.17265 0.76513 0.84468 0.83845 1.90811 1.50619 1.68193 1.31190 1.45863 1.69159 1.11837 1.08389 1.21921 0.95409 0.79404 1.00579 0.87340 1.21419 0.98233 0.99945 0.92947 1.20503 0.94351 0.99721 0.95430 1.20461 0.97419 1.01230 0.94211 1.20873 0.98214 1.01816 0.93887 1.21005 0.93555 1.00388 0.99491 1.20681 0.97721 0.98307 0.93613 1.21604 0.95494 0.98674 0.94037 1.19775 0.87698 0.92734 0.89591 0.91096 1.42620 1.26184 1.37124 1.31019 1.18988 0.98743 1.14198 1.05781 0.88967 1.24628 0.96946 0.98628 0.98164 1.69688 1.14471 1.35263 1.37988 0.86626 0.77651 0.81110 0.83677 1.20769 1.21560 1.20176 0.90949 0.91077 0.90962 0.77689 0.89291 0.89885 0.89036 0.76287 0.89590 0.90847 0.87150 0.86726 0.86541 0.86166 0.80162 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 10.38 36.00 0.37 -0.53 16 2 C -0.14 -1.63 6.38 -102.50 -0.65 -2.29 16 3 C -0.04 -0.41 11.96 29.30 0.35 -0.06 16 4 O -0.17 -1.85 10.52 7.66 0.08 -1.77 16 5 C 0.04 0.46 7.37 -34.97 -0.26 0.20 16 6 C -0.08 -0.65 10.24 36.00 0.37 -0.28 16 7 C -0.23 -2.91 6.07 -103.28 -0.63 -3.54 16 8 C 0.59 8.87 7.25 -12.54 -0.09 8.78 16 9 O -0.53 -9.86 16.75 5.27 0.09 -9.77 16 10 N -0.70 -9.67 5.11 -53.51 -0.27 -9.95 16 11 C 0.13 2.12 3.03 -66.51 -0.20 1.92 16 12 H 0.11 1.95 7.46 -51.93 -0.39 1.56 16 13 C -0.09 -1.30 6.49 -26.85 -0.17 -1.47 16 14 C -0.10 -1.56 6.14 -104.20 -0.64 -2.20 16 15 C -0.12 -1.63 10.04 -39.53 -0.40 -2.03 16 16 C -0.13 -1.77 10.05 -39.63 -0.40 -2.17 16 17 C -0.13 -1.87 10.05 -39.63 -0.40 -2.27 16 18 C -0.08 -1.45 10.04 -39.54 -0.40 -1.85 16 19 C -0.09 -1.66 5.76 -104.21 -0.60 -2.26 16 20 C 0.21 3.93 3.11 -68.04 -0.21 3.71 16 21 H 0.07 1.32 8.05 -51.93 -0.42 0.90 16 22 N -0.73 -16.62 4.96 -53.53 -0.27 -16.88 16 23 C -0.25 -6.69 10.44 -15.06 -0.16 -6.85 16 24 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 25 C 0.01 0.37 5.50 -17.43 -0.10 0.28 16 26 N -0.93 -28.39 13.97 55.49 0.78 -27.62 16 27 Si 0.88 21.86 27.74 -169.99 -4.71 17.14 16 28 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 29 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 30 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.21 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.81 7.93 -51.93 -0.41 0.39 16 38 H 0.40 4.85 8.64 -40.82 -0.35 4.50 16 39 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 41 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 43 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 44 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 45 H 0.36 8.34 5.65 -40.82 -0.23 8.11 16 46 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 391.41 15.07 5.90 5.90 Total: -1.00 -33.66 391.41 -9.08 -42.74 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -6.46 Total: 13.11 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -4.21 Total: -12.90 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.24 Total: -54.45 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.17 Total: -11.54 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.66 -9.08 -42.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960263895.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.359 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds